- Introduction
- Tutorial
- Data Requirements
- The Main Window
- Opening a Dataset
- Viewing in 2D
- Zooming in 2D
- Slice Viewer
- Viewing in 3D
- Settings
- Advanced Settings
- Tracing Dendrites
- Semi-Manual and Manual Tracing
- Selection and Deselection
- Editing the Model
- Saving the Model
- Spine Detection and Classification
- Editing the Spines
- Saving the Spines
- Miscellaneous
- Advanced Selection
- Labeling the Model
- Branch Order and Section Labels
- Saving Edge Labeling
- Taking Measurements
- Editing the Measurements
- Saving the Measurements
- Region of Interest (ROI)
- Saving the Dataset and Projections
- Progress and Cancellation
- Rendering Options
- Other Viewing Options
- Information Dialogs
- Importing Models
- Importing Spines
- The .ns File
- Image Processing
- License
- Funding and Credits
- Other Resources
Send questions or comments to: alfredo.rodriguez@mssm.edu