Iyengar Laboratory

Seth Berger, B.A.

M.D./Ph.D. Student, Department of Pharmacology and Systems Therapeutics
E-mail: seth.berger@mssm.edu

Mailing Address

One Gustave L. Levy Place, Box 1215 New York NY 10029

Training and Education

B.A. (2004) University of Pennsylvania, Philadelphia, PA, USA

Research Interests

Computational Biology

Publications

Berger SI, Posner JM, Ma'ayan A. Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases. BMC Bioinformatics. 2007 Oct 4;8(1):372.

Berger SI, Iyengar R, Ma'ayan A. AVIS: AJAX Viewer of Interactive Signaling Networks. Bioinformatics. Oct 15;23(20):2803-5.

Tools

AVIS AJAX Viewer for Signaling Networks: AVIS is a visualization tool for viewing and sharing intracellular signaling, gene regulation and protein interaction networks. AVIS is implemented as an AJAX enabled syndicated Google gadget. It allows any webpage to render an image from a text file representation of signaling, gene regulatory, or protein interaction networks.

Web interface for Genes2Networks: This program draws from a large background network consisting of several protein interaction datasets. It will take a list of genes you provide as seed genes and identify all interacting genes that fall on paths through the background network between them.