ÿþProbe Set ID Chip Organism Annotation Date Sequence Type Sequence Source Sequence Derived From Sequence Description Sequence ID Transcript ID Group ID Title Gene Symbol Location Unigene LocusLink SwissProt EC Number OMIM Ensembl ID References Full Length Ref. Sequences Biological Process (GO) Cellular Component (GO) Molecular Function (GO) Biochemical Function (Proteome) Cellular Role (Proteome) Molecular Localization (Proteome) Organismal Role (Proteome) Subcellular Localization (Proteome) Pathways GenMAPP Pathways KEGG InterPro Pfam BLOCKS SCOP TMM Protein Families Protein Similarities BLASTP (GenBank NR) Protein Similarities BLASTx (SwissProt/TrEMBL) Orthologs/Homologs Genome Alignment Overlapping Transcripts 200000_s_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_006445.1 "gb:NM_006445.1 /DEF=Homo sapiens U5 snRNP-specific protein (220 kD), ortholog of S. cerevisiae Prp8p (PRP8), mRNA. /FEA=mRNA /GEN=PRP8 /PROD=U5 snRNP-specific protein (220 kD), ortholog ofS. cerevisiae Prp8p /DB_XREF=gi:5453983 /UG=Hs.181368 U5 snRNP-specific protein (220 kD), ortholog of S. cerevisiae Prp8p /FL=gb:AB007510.1 gb:AF092565.1 gb:NM_006445.1" g5453983 Hs.181368.0 "1500070371 (2 transcripts, 2 gene clusters)" PRP8 pre-mRNA processing factor 8 homolog (yeast) PRPF8 Chr:17p13.3 Hs.181368 10594 O14547 /// O75965 /// Q9BW78 --- --- --- --- NM_006445 // U5 snRNP-specific protein 6371 // mRNA splicing // predicted/computed /// 6397 // mRNA processing // predicted/computed 5634 // nucleus // not recorded /// 5682 // snRNP U5 // experimental evidence 8248 // pre-mRNA splicing factor // predicted/computed RNA-binding protein // predicted/computed /// Spliceosomal subunit // experimental evidence RNA processing/modification // experimental evidence /// RNA splicing // experimental evidence RNA-associated // experimental evidence --- Nuclear // predicted/computed --- --- IPR000555 // Mov34 family Mov34 // Mov34/MPN/PAD-1 family;1.3e-26 --- --- --- --- "2463577 // PRP8 protein [Homo sapiens];0.0 /// 17999537 // U5 snRNP-specific protein; U5 snRNP-specific protein (220 kD), ortholog of S. cerevisiae Prp8p; precursor mRNA processing protein; splicing factor Prp8 [Homo sapiens];0.0" Q99PV0 // Gene-TRE:PRP8 PRE-MRNA PROCESSING 8 PROTEIN. length=2335;0 /// O14547 // Gene-TRE:HPRP8 PRP8 PROTEIN. length=2335;0 /// O75965 // SPLICING FACTOR PRP8. length=2335;0 rc_AA859532_at RG-U34A // 86.58% EST Putative Ortholog /// 1386452_at RAE230A // 86.58% EST Putative Ortholog /// 168106_at MG-U74Cv2 // pre-mRNA processing factor 8 Curated Ortholog /// 1422453_at MOE430A // pre-mRNA processing factor 8 Curated Ortholog /// aa155321_g_at Mu11KsubA // pre-mRNA processing factor 8 Curated Ortholog /// aa155321_at Mu11KsubA // pre-mRNA processing factor 8 Curated Ortholog /// 98574_at MG-U74Av2 // pre-mRNA processing factor 8 Curated Ortholog chr17p13.3 // 1889639-1890386 // - // 99 Hs.181368 // 5 // NM_006445 // PRP8 pre-mRNA processing factor 8 homolog (yeast) // chr17 // 1889546-1923792 // - 200001_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001749.1 "gb:NM_001749.1 /DEF=Homo sapiens calpain 4, small subunit (30K) (CAPN4), mRNA. /FEA=mRNA /GEN=CAPN4 /PROD=calpain 4 small subunit /DB_XREF=gi:4502564 /UG=Hs.74451 calpain 4, small subunit (30K) /FL=gb:BC000592.1 gb:NM_001749.1" g4502564 Hs.74451.0 --- "calpain, small subunit 1" CAPNS1 Chr:19q13.12 Hs.74451 826 AAH17308 /// AAH18931 /// P04632 /// Q96EW0 --- --- ENSG00000126247 --- "NM_001749 // calpain, small subunit 1" 8284 // positive regulation of cell proliferation // experimental evidence --- 5509 // calcium ion binding // extended:inferred from electronic annotation; fhand; 0.14 /// 4198 // calpain // predicted/computed Regulatory subunit // not recorded Protein degradation // not recorded --- --- --- --- --- IPR002048 // Calcium-binding EF-hand efhand // EF hand;5.4e-09 IPB003474 // GntP family permease;0.0088 "d1df0a1 // a.39.1.7 // Calpain large subunit, C-terminal domain (domain IV) ;1.52e-56" --- --- "4502565 // calpain, small subunit 1; calpain, small polypeptide; calcium-dependent protease, small subunit; calcium-activated neutral proteinase; calpain 4, small subunit (30K) [Homo sapiens];e-156 /// 18314496 // calpain, small subunit 1 [Homo sapiens];e-156" "Q9BQC8 // CALPAIN 3, (P94) (UNKNOWN) (PROTEIN FOR MGC:10767). length=156;3e-50 /// P97572 // Gene-TRE:CSS1 CALPAIN SMALL SUBUNIT (EC 3.4.22.17) (FRAGMENT). length=266;1e-144 /// CANS_MOUSE // Gene:CAPNS1 Gene:CAPN4 Calcium-dependent protease, small subunit (Calpain regulatory subunit) (Calcium-activated neutral proteinase) (CANP). length=269;1e-146 /// Q9R1C5 // CALPAIN SMALL SUBUNIT (FRAGMENT). length=170;9e-93 /// CANS_RAT // SW:P97572 Gene:CAPNS1 Gene:CAPN4 Gene:CSS1 Calcium-dependent protease, small subunit (Calpain regulatory subunit) (Calcium-activated neutral proteinase) (CANP) (Fragment). length=266;1e-144 /// Q96L46 // Gene-TRE:CAPNS2 CALPAIN SMALL SUBUNIT 2. length=248;2e-92 /// Q9D7J7 // Gene-TRE:2310005G05RIK 2310005G05RIK PROTEIN. length=247;2e-92 /// Q9BPV4 // SIMILAR TO RIKEN CDNA 2310005G05 GENE. length=248;7e-93 /// CANS_HUMAN // SW:Q8WTX3 Gene:CAPNS1 Gene:CAPN4 Gene:CAPNS Calcium-dependent protease, small subunit (Calpain regulatory subunit) (Calcium-activated neutral proteinase) (CANP). length=268;1e-157 /// Q8WTX3 // CALPAIN, SMALL SUBUNIT 1. length=268;1e-157 /// Q8VEK4 // SIMILAR TO CALPAIN 4. length=268;1e-146" "rc_AI230702_at RG-U34C // ESTs, Highly similar to hematological and neurological expressed sequence 1 [Mus musculus] [M.musculus] Curated Ortholog /// rc_AA891935_at RG-U34A // calpain, small subunit 1 Curated Ortholog /// 1388581_at RAE230A // ESTs, Highly similar to hematological and neurological expressed sequence 1 [Mus musculus] [M.musculus] Curated Ortholog /// 1367462_at RAE230A // calpain, small subunit 1 Curated Ortholog /// rc_AI235780_at RG-U34C // calpain, small subunit 1 Curated Ortholog /// rc_AA892814_s_at RN-U34 // calpain, small subunit 1 Curated Ortholog /// rc_AI236570_s_at RG-U34C // calpain, small subunit 1 Curated Ortholog /// 1398936_at RAE230A // calpain, small subunit 1 Curated Ortholog /// 1371336_at RAE230A // ESTs, Highly similar to hematological and neurological expressed sequence 1 [Mus musculus] [M.musculus] Curated Ortholog /// rc_AA942716_at RG-U34B // ESTs, Highly similar to hematological and neurological expressed sequence 1 [Mus musculus] [M.musculus] Curated Ortholog /// rc_AA964422_f_at RG-U34B // calpain, small subunit 1 Curated Ortholog /// U53859_g_at RG-U34A // calpain, small subunit 1 Curated Ortholog /// U53859_at RN-U34 // calpain, small subunit 1 Curated Ortholog /// U53859_at RG-U34A // calpain, small subunit 1 Curated Ortholog /// rc_AI236570_s_at RN-U34 // calpain, small subunit 1 Curated Ortholog /// U53859_g_at RN-U34 // calpain, small subunit 1 Curated Ortholog /// rc_AA892814_s_at RG-U34A // calpain, small subunit 1 Curated Ortholog /// Msa.42827.0_s_at Mu11KsubB // calpain, small subunit 1 Curated Ortholog /// 1426400_a_at MOE430A // calpain, small subunit 1 Curated Ortholog /// 165397_f_at MG-U74Bv2 // calpain, small subunit 1 Curated Ortholog /// Msa.33146.0_f_at Mu11KsubB // calpain, small subunit 1 Curated Ortholog /// 100610_at MG-U74Av2 // calpain, small subunit 1 Curated Ortholog /// aa646384_at Mu11KsubA // calpain, small subunit 1 Curated Ortholog /// Msa.3944.0_f_at Mu11KsubB // calpain, small subunit 1 Curated Ortholog /// Msa.27359.0_f_at Mu11KsubB // calpain, small subunit 1 Curated Ortholog" chr19q13.12 // 37089435-37090159 // + // 99 "Hs.74451 // 10 // NM_001749 // calpain, small subunit 1 // chr19 // 37079872-37090211 // +" 200002_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_007209.1 "gb:NM_007209.1 /DEF=Homo sapiens ribosomal protein L35 (RPL35), mRNA. /FEA=mRNA /GEN=RPL35 /PROD=ribosomal protein L35 /DB_XREF=gi:6005859 /UG=Hs.182825 ribosomal protein L35 /FL=gb:BC000348.1 gb:U12465.1 gb:NM_007209.1" g6005859 Hs.182825.0 --- ribosomal protein L35 RPL35 Chr:9q34.1 Hs.182825 11224 P42766 /// Q96QJ7 --- --- ENSG00000136942 --- NM_007209 // ribosomal protein L35 6412 // protein biosynthesis // experimental evidence 5730 // nucleolus // experimental evidence /// 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // experimental evidence 3729 // mRNA binding // experimental evidence /// 3735 // structural protein of ribosome // experimental evidence RNA-binding protein // not recorded /// Ribosomal subunit // not recorded Protein synthesis // not recorded Ribosome-associated // not recorded General cellular role // not recorded Cytoplasmic // not recorded --- --- IPR001854 // Ribosomal protein L29 Ribosomal_L29 // Ribosomal L29 protein;1.7e-15 IPB001854 // Ribosomal protein L29;1.9e-27 --- --- --- 6005860 // ribosomal protein L35; 60S ribosomal protein L35 [Homo sapiens];2e-62 /// 15012043 // Similar to ribosomal protein L35 [Homo sapiens];5e-62 Q9W499 // Gene-TRE:CG4111 CG4111 PROTEIN. length=121;4e-37 /// RL35_HUMAN // Gene:RPL35 60S ribosomal protein L35. length=122;1e-62 /// RL35_CAEEL // Gene:RPL-35 Gene:ZK652.4 60S ribosomal protein L35. length=123;1e-40 /// Q96QJ7 // SIMILAR TO RIBOSOMAL PROTEIN L35. length=123;7e-63 /// Q9M3D2 // Gene-TRE:T26I12.50 RIBOSOMAL PROTEIN L35-LIKE. length=123;2e-38 /// RL35_YEAST // SW:P39930 Gene:RPL35A Gene:SOS1 Gene:YDL191W Gene:D1249 Gene:RPL35B Gene:SOS2 Gene:YDL136W OR Gene:D2170 60S RIBOSOMAL PROTEIN L35. length=120;4e-31 /// Q9SF53 // Gene-TRE:F11F8_7 PUTATIVE 60S RIBOSOMAL PROTEIN L35. length=123;2e-38 /// RL35_RAT // Gene:RPL35 60S RIBOSOMAL PROTEIN L35. length=122;6e-62 /// Q9LZ41 // Gene-TRE:T22P11_200 RIBOSOMAL PROTEIN L35-LIKE. length=123;1e-38 /// O80626 // Gene-TRE:AT2G39390 Gene-TRE:F12L6.5/AT2G39390 60S RIBOSOMAL PROTEIN L35 (PUTATIVE 60S RIBOSOMAL PROTEIN L35). length=123;2e-38 --- chr9q33.3 // 119269031-119270756 // - // 100 Hs.182825 // 4 // NM_007209 // ribosomal protein L35 // chr9 // 119266712-119270790 // - 200003_s_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000991.1 "gb:NM_000991.1 /DEF=Homo sapiens ribosomal protein L28 (RPL28), mRNA. /FEA=mRNA /GEN=RPL28 /PROD=ribosomal protein L28 /DB_XREF=gi:4506626 /UG=Hs.4437 ribosomal protein L28 /FL=gb:BC000072.1 gb:NM_000991.1 gb:U14969.1" g4506626 Hs.4437.0 "1500070372 (2 transcripts, 2 gene clusters)" ribosomal protein L28 RPL28 Chr:19q13.4 Hs.356371 6158 P46779 --- --- --- --- NM_000991 // ribosomal protein L28 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR002672 // Ribosomal L28e protein Ribosomal_L28e // Ribosomal L28e protein family;4.1e-79 IPB002672 // Ribosomal L28e protein family;4.1e-82 --- --- --- 14603467 // Unknown (protein for MGC:20328) [Homo sapiens];3e-72 /// 13904866 // ribosomal protein L28; 60S ribosomal protein L28 [Homo sapiens];1e-72 Q9BWQ0 // RIBOSOMAL PROTEIN L28 (UNKNOWN) (PROTEIN FOR MGC:20378) (PROTEIN FOR MGC:20081). length=137;6e-73 /// RL28_RAT // Gene:RPL28 60S RIBOSOMAL PROTEIN L28. length=136;6e-70 /// Q96FX1 // UNKNOWN (PROTEIN FOR MGC:20328). length=137;1e-72 /// RL28_MOUSE // Gene:RPL28 60S RIBOSOMAL PROTEIN L28. length=136;8e-72 /// RL28_HUMAN // SW:Q9BWQ0 SW:Q96FX1 Gene:RPL28 60S ribosomal protein L28. length=136;2e-72 /// O60251 // RIBOSOMAL PROTEIN L28 (FRAGMENT). length=53;1e-22 --- chr19q13.42 // 56322344-56324228 // + // 100 Hs.356371 // 7 // NM_000991 // ribosomal protein L28 // chr19 // 56321902-56324344 // + 200004_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001418.1 "gb:NM_001418.1 /DEF=Homo sapiens eukaryotic translation initiation factor 4 gamma, 2 (EIF4G2), mRNA. /FEA=mRNA /GEN=EIF4G2 /PROD=eukaryotic translation initiation factor 4gamma, 2 /DB_XREF=gi:4503538 /UG=Hs.183684 eukaryotic translation initiation factor 4 gamma, 2 /FL=gb:U73824.1 gb:U76111.1 gb:NM_001418.1" g4503538 Hs.183684.0 --- "eukaryotic translation initiation factor 4 gamma, 2" EIF4G2 Chr:11p15 Hs.183684 1982 P78344 /// Q8NI71 /// Q96C16 --- --- ENSG00000110321 --- "NM_001418 // eukaryotic translation initiation factor 4 gamma, 2" 7050 // cell cycle arrest // predicted/computed /// 6445 // regulation of translation // experimental evidence /// 8219 // cell death // predicted/computed 8304 // eukaryotic translation initiation factor 4 complex // experimental evidence "3723 // RNA binding // extended:inferred from electronic annotation; MIF4G; 4.6e-63 /// 8135 // translation factor, nucleic acid binding // experimental evidence" RNA-binding protein // predicted/computed Protein synthesis // experimental evidence Protein synthesis factor // experimental evidence General cellular role // experimental evidence Cytoplasmic // predicted/computed --- --- "IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) /// IPR003890 // Initiation factor eIF-4 gamma, middle /// IPR003891 // Initiation factor eIF-4 gamma, MA3 /// IPR003307 // eIF4-gamma/eIF5/eIF2-epsilon" MA3 // MA3 domain;4.2e-37 /// MIF4G // MIF4G domain;4.6e-63 /// W2 // eIF4-gamma/eIF5/eIF2-epsilon;2.9e-33 IPB003890 // Middle domain of eIF4G;1.2e-05 d1hu3a_ // a.118.1.2 // Eukaryotic initiation factor eIF4G ;8.91e-70 --- --- "3218320 // death associated protein 5 [Homo sapiens];0.0 /// 4503539 // eukaryotic translation initiation factor 4 gamma, 2; Eukaryotic translation initiation factor 4G-like 1; p97 [Homo sapiens];0.0" Q62448 // TRE:P97867 Gene-TRE:EIF4G2 EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 2 (TRANSLATION REPRESSOR NAT1). length=907;0 /// P78344 // TRE:O60877 TRE:P78404 Gene-TRE:EIF4G2 Gene-TRE:DAP5 Gene-TRE:DAP-5 EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 2 (P97) (DEATH ASSOCIATED PROTEIN 5) (DAP-5) (TRANSLATION REPRESSOR NAT1). length=907;0 /// Q921U3 // UNKNOWN (PROTEIN FOR IMAGE:3598196) (FRAGMENT). length=113;1e-60 --- chr11p15.4 // 11388870-11389241 // - // 100 "Hs.183684 // 8 // NM_001418 // eukaryotic translation initiation factor 4 gamma, 2 // chr11 // 11388723-11400594 // -" 200005_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_003753.1 "gb:NM_003753.1 /DEF=Homo sapiens eukaryotic translation initiation factor 3, subunit 7 (zeta, 6667kD) (EIF3S7), mRNA. /FEA=mRNA /GEN=EIF3S7 /PROD=eukaryotic translation initiation factor 3,subunit 7 (zeta, 6667kD) /DB_XREF=gi:4503522 /UG=Hs.55682 eukaryotic translation initiation factor 3, subunit 7 (zeta, 6667kD) /FL=gb:BC000328.1 gb:BC000469.1 gb:U54558.1 gb:NM_003753.1" g4503522 Hs.55682.0 --- "eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa" EIF3S7 Chr:22q13.1 Hs.55682 8664 O15371 --- --- ENSG00000100353 --- NM_003753 // eukaryotic translation initiation factor 3 subunit 7 6446 // regulation of translational initiation // predicted/computed 5852 // eukaryotic translation initiation factor 3 complex // predicted/computed 3743 // translation initiation factor // predicted/computed --- Protein synthesis // predicted/computed Protein synthesis factor // predicted/computed --- Cytoplasmic // predicted/computed Translation_Factors --- --- --- IPB001580 // Calreticulin family;0.0019 --- --- --- "4503523 // eukaryotic translation initiation factor 3 subunit 7; translation initiation factor eIF3 p66 subunit [Homo sapiens];0.0 /// 20343895 // eukaryotic translation initiation factor 3, subunit 7 (zeta, 66/ [Mus musculus];0.0" IF37_HUMAN // Gene:EIF3S7 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66). length=548;0 /// IF37_MOUSE // Gene:EIF3S7 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66) (eIF3d). length=547;0 "1393232_at RAE230B // 89.89% ESTs, Weakly similar to MT1_RAT METALLOTHIONEIN-I (MT-I) [R.norvegicus] Putative Ortholog /// rc_AA819204_at RG-U34C // 89.89% ESTs, Weakly similar to MT1_RAT METALLOTHIONEIN-I (MT-I) [R.norvegicus] Putative Ortholog /// 1446997_at MOE430B // eukaryotic translation initiation factor 3, subunit 7 (zeta) Curated Ortholog /// 165354_r_at MG-U74Bv2 // eukaryotic translation initiation factor 3, subunit 7 (zeta) Curated Ortholog /// 99101_at MG-U74Av2 // eukaryotic translation initiation factor 3, subunit 7 (zeta) Curated Ortholog /// 1416100_at MOE430A // eukaryotic translation initiation factor 3, subunit 7 (zeta) Curated Ortholog /// Z31134_s_at Mu11KsubB // eukaryotic translation initiation factor 3, subunit 7 (zeta) Curated Ortholog" chr22q12.3 // 33521476-33523181 // - // 92 --- 200006_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_007262.1 "gb:NM_007262.1 /DEF=Homo sapiens RNA-binding protein regulatory subunit (DJ-1), mRNA. /FEA=mRNA /GEN=DJ-1 /PROD=RNA-binding protein regulatory subunit /DB_XREF=gi:6005748 /UG=Hs.10958 RNA-binding protein regulatory subunit /FL=gb:AF021819.1 gb:NM_007262.1 gb:D61380.1" g6005748 Hs.10958.0 --- RNA-binding protein regulatory subunit DJ-1 Chr:1p36.33-p36.12 Hs.10958 11315 O14805 /// Q99497 --- --- ENSG00000116288 --- NM_007262 // RNA-binding protein regulatory subunit 7265 // RAS protein signal transduction // predicted/computed 5737 // cytoplasm // experimental evidence /// 5634 // nucleus // experimental evidence --- --- --- --- --- Cytoplasmic // experimental evidence /// Nuclear // experimental evidence --- --- IPR002818 // Family of unknown function ThiJ/PfpI DJ-1_PfpI // DJ-1/PfpI family;6.1e-57 IPB002818 // ThiJ/PfpI family;3.8e-12 d1g2ia_ // c.23.16.2 // Intracellular protease ;7.62e-37 --- --- 2460318 // RNA-binding protein regulatory subunit [Homo sapiens];e-100 /// 6005749 // RNA-binding protein regulatory subunit [Homo sapiens];e-102 O14805 // Gene-TRE:BK215D11.1 RNA-BINDING PROTEIN REGULATORY SUBUNIT (UNKNOWN) (PROTEIN FOR MGC:5243). length=189;1e-101 /// O88767 // Gene-TRE:CAP1 CAP1 PROTEIN. length=189;1e-94 /// Q99LX0 // SIMILAR TO DJ-1 PROTEIN. length=189;3e-93 /// Q99497 // Gene-TRE:DJ-1 DJ-1 PROTEIN. length=189;1e-102 /// O88306 // Gene-TRE:DJ1 Gene-TRE:DJ-1 DJ-1. length=173;7e-85 AJ007291_at RG-U34A // 84.67% fertility protein SP22 Putative Ortholog /// 1368653_a_at RAE230A // 84.67% fertility protein SP22 Putative Ortholog /// AJ007291_g_at RG-U34A // 84.67% fertility protein SP22 Putative Ortholog /// 95491_at MG-U74Av2 // RNA binding protein regulatory subunit Curated Ortholog /// 1416526_a_at MOE430A // RNA binding protein regulatory subunit Curated Ortholog /// w45916_s_at Mu11KsubB // RNA binding protein regulatory subunit Curated Ortholog /// 1456194_a_at MOE430A // RNA binding protein regulatory subunit Curated Ortholog chr1p36.23 // 7846665-7854225 // + // 100 Hs.10958 // 4 // NM_007262 // RNA-binding protein regulatory subunit // chr1 // 7831754-7854257 // + 200007_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_003134.1 "gb:NM_003134.1 /DEF=Homo sapiens signal recognition particle 14kD (homologous Alu RNA-binding protein) (SRP14), mRNA. /FEA=mRNA /GEN=SRP14 /PROD=signal recognition particle 14kD (homologous AluRNA-binding protein) /DB_XREF=gi:4507210 /UG=Hs.180394 signal recognition particle 14kD (homologous Alu RNA-binding protein) /FL=gb:NM_003134.1 gb:U07857.1" g4507210 Hs.180394.0 --- signal recognition particle 14kDa (homologous Alu RNA binding protein) SRP14 Chr:15q22 Hs.180394 6727 AAH35495 /// P37108 /// Q96Q14 --- --- ENSG00000140319 --- NM_003134 // signal recognition particle 14kDa (homologous Alu RNA binding protein) 6613 // co-translational membrane targeting // predicted/computed 5737 // cytoplasm // experimental evidence /// 5786 // signal recognition particle // predicted/computed 8312 // 7S RNA binding // experimental evidence /// 3723 // RNA binding // predicted/computed RNA-binding protein // experimental evidence Protein translocation // predicted/computed RNA-associated // experimental evidence --- Cytoplasmic // predicted/computed --- --- "IPR000104 // Antifreeze protein, type I /// IPR003210 // Signal recognition particle, 14 kDa protein" SRP14 // Signal recognition particle 14kD protein;4.1e-61 PR00833 // Pollen allergen Poa pI signature;0.0025 "d1914__ // d.49.1.1 // Signal recognition particle alu RNA binding heterodimer, SRP9/14 ;4.56e-49" --- --- 4507211 // signal recognition particle 14kDa (homologous Alu RNA binding protein); signal recognition particle 14kD (homologous Alu RNA-binding protein); signal recognition particle 14kD (homologous Alu RNA binding protein) [Homo sapiens];5e-70 /// 1082198 // Alu RNA-binding protein - human;2e-69 SR14_MOUSE // Gene:SRP14 Signal recognition particle 14 kDa protein (SRP14). length=110;1e-51 /// SR14_HUMAN // Gene:SRP14 SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN (SRP14) (18 KDA ALU RNA BINDING PROTEIN). length=136;2e-70 /// Q96Q14 // Gene-TRE:SRP14 SIGNAL RECOGNITION PARTICLE 14KD. length=136;7e-70 1455939_x_at MOE430A // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog /// 162477_r_at MG-U74Av2 // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog /// 1454615_x_at MOE430A // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog /// 101519_at MG-U74Av2 // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog /// M29264_f_at Mu11KsubA // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog /// 1418567_a_at MOE430A // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog /// 1418568_x_at MOE430A // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog --- --- 200008_s_at HG-U133B Homo sapiens 1-Mar-03 Exemplar GenBank D13988.1 "gb:D13988.1 /DEF=Human rab GDI mRNA, complete cds. /FEA=mRNA /PROD=human rab GDI /DB_XREF=gi:285974 /UG=Hs.56845 GDP dissociation inhibitor 2 /FL=gb:BC005145.1 gb:D13988.1 gb:NM_001494.2" g285974 Hs.56845.0 "1500070373 (1 transcript, 1 gene cluster)" GDP dissociation inhibitor 2 GDI2 Chr:10p15 Hs.56845 2665 P50395 /// Q8TB95 --- --- ENSG00000057608 --- NM_001494 // GDP dissociation inhibitor 2 6899 // non-selective vesicle transport // predicted/computed --- 5097 // RAB GTPase activator // extended:Unknown; GDI; 0 /// 5093 // RAB GDP-dissociation inhibitor // predicted/computed Inhibitor or repressor // experimental evidence --- --- --- --- --- --- IPR002005 // Rab GTPase activator /// IPR000806 // Rab GDI protein GDI // GDP dissociation inhibitor;0 IPB000172 // Glucose-methanol-choline (GMC) oxidoreductase;0.0013 "d1d5ta2 // d.16.1.6 // Guanine nucleotide dissosiation inhibitor, GDI ;3.23e-45 /// d1d5ta1 // c.3.1.3 // Guanine nucleotide dissosiation inhibitor, GDI ;1.11e-138" --- EC:5.4.99.9 // GLF_MYCPN UDP-GALACTOPYRANOSE MUTASE (EC 5.4.99.9).;6.81e-37 "6598323 // GDP dissociation inhibitor 2; rab GDP-dissociation inhibitor, beta [Homo sapiens];0.0 /// 285975 // human rab GDI [Homo sapiens];0.0" Q96CX5 // HYPOTHETICAL 50.5 KDA PROTEIN. length=447;0 /// Q91Z41 // HYPOTHETICAL 10.5 KDA PROTEIN (FRAGMENT). length=93;1e-34 /// GDIC_MOUSE // SW:Q9D8M9 Gene:GDI3 RAB GDP DISSOCIATION INHIBITOR BETA-2 (RAB GDI BETA-2) (GDI-3). length=445;0 /// Q9UQM6 // RAB GDP DISSOCIATION INHIBITOR BETA (FRAGMENT). length=359;0 /// Q9VLB7 // Gene-TRE:GDI Gene-TRE:CG4422 GDI PROTEIN. length=443;1e-174 /// O43928 // GDP DISSOCIATION INHIBITOR BETA. length=445;0 /// GDIA_MOUSE // SW:Q91Y71 Gene:GDI1 Gene:RABGDIA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (GDI-1). length=447;0 /// GDIB_HUMAN // SW:O43928 SW:Q9UQM6 Gene:GDI2 Gene:RABGDIB Rab GDP dissociation inhibitor beta (Rab GDI beta) (GDI-2). length=445;0 /// Q8VHM3 // GUANOSINE DIPHOSPHATE DISSOCIATION INHIBITOR 1. length=447;0 /// Q9R274 // RAB GDP DISSOCIATION INHIBITOR ALPHA (FRAGMENT). length=359;0 /// Q91Y71 // RAB GDP DISSOCIATION INHIBITOR ALPHA. length=447;0 /// GDIA_RAT // SW:Q9R274 Gene:GDI1 Gene:RABGDIA RAB GDP DISSOCIATION INHIBITOR ALPHA (RAB GDI ALPHA) (GDI-1). length=447;0 /// GDIB_RAT // Gene:GDI2 Gene:RABGDIB RAB GDP DISSOCIATION INHIBITOR BETA (RAB GDI BETA) (GDI-2). length=445;0 /// GDIA_HUMAN // SW:P50394 Gene:GDI1 Gene:RABGDIA Gene:XAP4 Gene:OPHN2 Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (GDI-1) (XAP-4) (Oligophrenin 2). length=447;0 /// GDIB_MOUSE // Gene:GDI2 Gene:RABGDIB RAB GDP DISSOCIATION INHIBITOR BETA (RAB GDI BETA) (GDI-2). length=445;0 1398822_at RAE230A // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// 1367460_at RAE230A // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// rc_AI105149_at RG-U34C // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// X74401_at RG-U34A // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// Msa.3107.0_i_at Mu11KsubB // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog /// Msa.3107.0_f_at Mu11KsubB // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog /// 94642_at MG-U74Av2 // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog /// 1421742_at MOE430A // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog chr10p15.1 // 5772361-5774634 // - // 100 Hs.56845 // 7 // NM_001494 // GDP dissociation inhibitor 2 // chr10 // 5771475-5819663 // - 200009_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001494.2 "gb:NM_001494.2 /DEF=Homo sapiens GDP dissociation inhibitor 2 (GDI2), mRNA. /FEA=mRNA /GEN=GDI2 /PROD=GDP dissociation inhibitor 2 /DB_XREF=gi:6598322 /UG=Hs.56845 GDP dissociation inhibitor 2 /FL=gb:BC005145.1 gb:D13988.1 gb:NM_001494.2" g6598322 Hs.56845.0 --- GDP dissociation inhibitor 2 GDI2 Chr:10p15 Hs.56845 2665 P50395 /// Q8TB95 --- --- ENSG00000057608 --- NM_001494 // GDP dissociation inhibitor 2 6899 // non-selective vesicle transport // predicted/computed --- 5097 // RAB GTPase activator // extended:Unknown; GDI; 0 /// 5093 // RAB GDP-dissociation inhibitor // predicted/computed Inhibitor or repressor // experimental evidence --- --- --- --- --- --- IPR002005 // Rab GTPase activator /// IPR000806 // Rab GDI protein GDI // GDP dissociation inhibitor;0 IPB000172 // Glucose-methanol-choline (GMC) oxidoreductase;0.0013 "d1d5ta2 // d.16.1.6 // Guanine nucleotide dissosiation inhibitor, GDI ;3.23e-45 /// d1d5ta1 // c.3.1.3 // Guanine nucleotide dissosiation inhibitor, GDI ;1.11e-138" --- EC:5.4.99.9 // GLF_MYCPN UDP-GALACTOPYRANOSE MUTASE (EC 5.4.99.9).;6.81e-37 "6598323 // GDP dissociation inhibitor 2; rab GDP-dissociation inhibitor, beta [Homo sapiens];0.0 /// 285975 // human rab GDI [Homo sapiens];0.0" Q91Z41 // HYPOTHETICAL 10.5 KDA PROTEIN (FRAGMENT). length=93;2e-34 /// Q96CX5 // HYPOTHETICAL 50.5 KDA PROTEIN. length=447;0 /// GDIC_MOUSE // SW:Q9D8M9 Gene:GDI3 RAB GDP DISSOCIATION INHIBITOR BETA-2 (RAB GDI BETA-2) (GDI-3). length=445;0 /// Q9UQM6 // RAB GDP DISSOCIATION INHIBITOR BETA (FRAGMENT). length=359;0 /// Q9VLB7 // Gene-TRE:GDI Gene-TRE:CG4422 GDI PROTEIN. length=443;1e-175 /// O43928 // GDP DISSOCIATION INHIBITOR BETA. length=445;0 /// GDIA_MOUSE // SW:Q91Y71 Gene:GDI1 Gene:RABGDIA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (GDI-1). length=447;0 /// GDIB_HUMAN // SW:O43928 SW:Q9UQM6 Gene:GDI2 Gene:RABGDIB Rab GDP dissociation inhibitor beta (Rab GDI beta) (GDI-2). length=445;0 /// Q8VHM3 // GUANOSINE DIPHOSPHATE DISSOCIATION INHIBITOR 1. length=447;0 /// Q9R274 // RAB GDP DISSOCIATION INHIBITOR ALPHA (FRAGMENT). length=359;0 /// Q91Y71 // RAB GDP DISSOCIATION INHIBITOR ALPHA. length=447;0 /// GDIA_RAT // SW:Q9R274 Gene:GDI1 Gene:RABGDIA RAB GDP DISSOCIATION INHIBITOR ALPHA (RAB GDI ALPHA) (GDI-1). length=447;0 /// GDIB_RAT // Gene:GDI2 Gene:RABGDIB RAB GDP DISSOCIATION INHIBITOR BETA (RAB GDI BETA) (GDI-2). length=445;0 /// GDIA_HUMAN // SW:P50394 Gene:GDI1 Gene:RABGDIA Gene:XAP4 Gene:OPHN2 Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (GDI-1) (XAP-4) (Oligophrenin 2). length=447;0 /// GDIB_MOUSE // Gene:GDI2 Gene:RABGDIB RAB GDP DISSOCIATION INHIBITOR BETA (RAB GDI BETA) (GDI-2). length=445;0 1398822_at RAE230A // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// 1367460_at RAE230A // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// rc_AI105149_at RG-U34C // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// X74401_at RG-U34A // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// Msa.3107.0_i_at Mu11KsubB // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog /// Msa.3107.0_f_at Mu11KsubB // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog /// 94642_at MG-U74Av2 // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog /// 1421742_at MOE430A // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog chr10p15.1 // 5771517-5772075 // - // 99 Hs.56845 // 5 // NM_001494 // GDP dissociation inhibitor 2 // chr10 // 5771475-5819663 // - 200010_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000975.1 "gb:NM_000975.1 /DEF=Homo sapiens ribosomal protein L11 (RPL11), mRNA. /FEA=mRNA /GEN=RPL11 /PROD=ribosomal protein L11 /DB_XREF=gi:4506594 /UG=Hs.179943 ribosomal protein L11 /FL=gb:L05092.1 gb:NM_000975.1" g4506594 Hs.179943.0 --- ribosomal protein L11 RPL11 Chr:1p36.1-p35 Hs.388664 6135 P39026 /// Q8TDH2 /// Q9Y674 --- --- ENSG00000142676 --- NM_000975 // ribosomal protein L11 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // not recorded /// Ribosomal subunit // not recorded Protein synthesis // not recorded Ribosome-associated // not recorded General cellular role // not recorded --- --- --- IPR002132 // Ribosomal protein L5 Ribosomal_L5_C // ribosomal L5P family C-terminus;8.9e-60 /// Ribosomal_L5 // Ribosomal protein L5;6e-23 IPB002132 // Ribosomal protein L5;4.7e-44 d1jj2d_ // d.77.1.1 // Ribosomal protein L5 ;6.66e-61 --- --- 22001905 // 60S ribosomal protein L11;8e-99 /// 13385408 // RIKEN cDNA 2010203J19 [Mus musculus];e-99 Q8VC94 // HYPOTHETICAL 19.0 KDA PROTEIN. length=167;2e-91 /// RL11_MOUSE // Gene:RPL11 60S ribosomal protein L11. length=177;1e-96 /// Q9Y674 // RIBOSOMAL PROTEIN L11. length=177;2e-96 /// RL11_HUMAN // SW:P25121 Gene:RPL11 60S RIBOSOMAL PROTEIN L11. length=177;4e-98 /// RL11_HUMAN // SW:P25121 Gene:RPL11 60S RIBOSOMAL PROTEIN L11. length=177;2e-97 1417615_a_at MOE430A // RIKEN cDNA 2010203J19 gene Curated Ortholog chr1p36.11 // 23090094-23092257 // + // 98 Hs.388664 // 5 // NM_000975 // ribosomal protein L11 // chr1 // 23090083-23093901 // + 200011_s_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001659.1 "gb:NM_001659.1 /DEF=Homo sapiens ADP-ribosylation factor 3 (ARF3), mRNA. /FEA=mRNA /GEN=ARF3 /PROD=ADP-ribosylation factor 3 /DB_XREF=gi:4502202 /UG=Hs.119177 ADP-ribosylation factor 3 /FL=gb:M74491.1 gb:NM_001659.1" g4502202 Hs.119177.0 "1500070374 (1 transcript, 1 gene cluster)" ADP-ribosylation factor 3 ARF3 Chr:12q13 Hs.119177 377 AAH28402 /// AAM12596 /// P16587 --- --- ENSG00000134287 --- NM_001659 // ADP-ribosylation factor 3 6902 // non-selective vesicle assembly // predicted/computed --- 3924 // GTPase // experimental evidence /// 5525 // GTP binding // predicted/computed GTP-binding protein/GTPase // not recorded /// Hydrolase // not recorded /// Activator // not recorded --- --- --- --- --- --- IPR000251 // ADP-ribosylation factor family /// IPR005225 // Small GTP-binding protein domain /// IPR001806 // Ras GTPase superfamily /// IPR002046 // GTP-binding protein SAR1 arf // ADP-ribosylation factor family;6.9e-127 PR00449 // Transforming protein P21 RAS signature;0.0022 d1rrga_ // c.37.1.8 // ADP-ribosylation factor ;1.72e-57 --- --- 4502203 // ADP-ribosylation factor 3 [Homo sapiens];e-101 /// 4502201 // ADP-ribosylation factor 1 [Homo sapiens];2e-97 ARF3_DROME // SW:Q9V7B0 Gene:ARF51F Gene:ARF3 Gene:CG8156 ADP-ribosylation factor 3. length=174;4e-68 /// ARF1_HUMAN // SW:P10947 Gene:ARF1 ADP-ribosylation factor 1. length=180;3e-97 /// ARF1_ARATH // Gene:ARF1 Gene:AT2G47170 Gene:T08I13.1 ADP-RIBOSYLATION FACTOR 1. length=180;2e-86 /// Q9DD04 // Gene-TRE:ARF4 ADP-RIBOSYLATION FACTOR 4. length=181;1e-79 /// ARF2_ARATH // SW:Q9SGY6 Gene:AT1G10630 Gene:F20B24.7 Gene:AT1G70490 Gene:F24J13.6 ADP-RIBOSYLATION FACTOR 1-LIKE. length=180;1e-85 /// Q9V499 // Gene-TRE:ARF102F ARF102F PROTEIN. length=180;2e-80 /// Q9M1P5 // Gene-TRE:T17J13.250 ADP-RIBOSYLATION FACTOR-LIKE PROTEIN (AT3G62290/T17J13_250). length=181;9e-88 /// Q9FZ18 // Gene-TRE:T6A9.12 T6A9.12 PROTEIN. length=186;2e-41 /// ARF4_MOUSE // Gene:ARF4 ADP-RIBOSYLATION FACTOR 4. length=179;1e-79 /// ARF3_CAEEL // Gene:ARL-6 Gene:F45E4.1 ADP-RIBOSYLATION FACTOR 3. length=178;2e-55 /// ARF6_HUMAN // Gene:ARF6 ADP-ribosylation factor 6. length=174;1e-69 /// ARF1_HUMAN // SW:P10947 Gene:ARF1 ADP-ribosylation factor 1. length=180;6e-97 /// ARL1_YEAST // Gene:ARL1 Gene:ARF3 Gene:YBR164C Gene:YBR1216 ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1. length=183;3e-55 /// Q9D7H9 // Gene-TRE:2310008D22RIK 2310008D22RIK PROTEIN. length=181;3e-57 /// ARF4_MOUSE // Gene:ARF4 ADP-RIBOSYLATION FACTOR 4. length=179;4e-79 /// Q9VSG8 // Gene-TRE:CG7197 CG7197 PROTEIN. length=179;9e-49 /// O45099 // Gene-TRE:F57H12.1 F57H12.1 PROTEIN. length=180;2e-83 /// ARF3_HUMAN // Gene:ARF3 ADP-ribosylation factor 3. length=180;1e-101 /// ARF3_ARATH // Gene:ARF3 Gene:AT2G24765 Gene:F27A10.8 Gene:F27C12.31 ADP-ribosylation factor 3. length=181;1e-59 /// ARF3_HUMAN // Gene:ARF3 ADP-ribosylation factor 3. length=180;1e-100 /// Q9VNQ2 // Gene-TRE:ARF79F Gene-TRE:LARF1 ARF79F PROTEIN (ADP-RIBOSYLATION FACTOR 1). length=182;1e-95 /// ARF6_HUMAN // Gene:ARF6 ADP-ribosylation factor 6. length=174;3e-70 /// ARF2_MOUSE // SW:P10947 Gene:ARF2 ADP-RIBOSYLATION FACTOR 2. length=181;6e-96 /// ARL1_MOUSE // Gene:ARL1 Gene:ARF7 ADP-ribosylation factor-like protein 1. length=181;7e-57 /// Q9CXX3 // Gene-TRE:ARF4 ADP-RIBOSYLATION FACTOR 4. length=180;2e-79 /// ARF1_YEAST // Gene:ARF1 Gene:YDL192W Gene:D1244 ADP-RIBOSYLATION FACTOR 1. length=180;4e-78 /// Q9V7B0 // Gene-TRE:ARF51F Gene-TRE:CG8156 ARF51F PROTEIN. length=175;4e-68 /// ARL1_MOUSE // Gene:ARL1 Gene:ARF7 ADP-ribosylation factor-like protein 1. length=181;3e-57 /// ARF1_HUMAN // SW:P10947 Gene:ARF1 ADP-ribosylation factor 1. length=180;1e-97 /// ARF1_DROME // SW:Q9VNQ2 Gene:ARF79F Gene:ARF1 Gene:LARF1 Gene:CG8385 ADP-ribosylation factor 1. length=181;5e-95 /// ARF2_MOUSE // SW:P10947 Gene:ARF2 ADP-RIBOSYLATION FACTOR 2. length=181;2e-95 /// Q9LIK1 // Gene-TRE:AT3G22950 SIMILARITY TO ADP-RIBOSYLATION FACTOR (PUTATIVE ADP-RIBOSYLATION FACTOR). length=183;4e-52 /// Q9U2S4 // Gene-TRE:Y116A8C.12 Y116A8C.12 PROTEIN. length=175;3e-66 /// ARF1_CAEEL // Gene:ARF-1 Gene:B0336.2 ADP-RIBOSYLATION FACTOR 1. length=180;7e-94 /// ARF2_DROME // SW:Q9V499 Gene:ARF102F Gene:ARF2 Gene:CG11027 ADP-RIBOSYLATION FACTOR 2. length=179;6e-80 /// ARL1_HUMAN // SW:P80417 Gene:ARL1 ADP-ribosylation factor-like protein 1. length=181;6e-57 /// ARF4_HUMAN // SW:P21371 Gene:ARF4 ADP-ribosylation factor 4. length=179;5e-79 /// ARF6_HUMAN // Gene:ARF6 ADP-ribosylation factor 6. length=174;2e-69 /// Q91VR9 // SIMILAR TO ADP-RIBOSYLATION FACTOR 2. length=181;7e-94 L12382_at RG-U34A // 88.92% ADP-ribosylation factor 3 Putative Ortholog /// 1387447_at RAE230A // 88.92% ADP-ribosylation factor 3 Putative Ortholog /// 1437331_a_at MOE430A // ADP-ribosylation factor 3 Curated Ortholog /// 1421789_s_at MOE430A // ADP-ribosylation factor 3 Curated Ortholog /// 93700_at MG-U74Av2 // ADP-ribosylation factor 3 Curated Ortholog /// Msa.3060.0_s_at Mu11KsubB // ADP-ribosylation factor 3 Curated Ortholog /// 96587_at MG-U74Av2 // ADP-ribosylation factor 3 Curated Ortholog /// 1423973_a_at MOE430A // ADP-ribosylation factor 3 Curated Ortholog chr12q13.12 // 49556600-49557134 // - // 100 Hs.119177 // 5 // NM_001659 // ADP-ribosylation factor 3 // chr12 // 49556548-49561530 // - 200012_x_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000982.1 "gb:NM_000982.1 /DEF=Homo sapiens ribosomal protein L21 (gene or pseudogene) (RPL21), mRNA. /FEA=mRNA /GEN=RPL21 /PROD=ribosomal protein L21 (gene or pseudogene) /DB_XREF=gi:4506610 /UG=Hs.184108 ribosomal protein L21 /FL=gb:BC001603.1 gb:NM_000982.1 gb:U14967.1 gb:U25789.1" g4506610 Hs.184108.0 "1500070375 (24 transcripts, 21 gene clusters)" ribosomal protein L21 RPL21 Chr:13q12.13 Hs.350077 6144 P46778 --- --- ENSG00000122516 /// ENSG00000122026 /// ENSG00000162767 /// ENSG00000138174 --- NM_000982 // ribosomal protein L21 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR001147 // Ribosomal protein L21e Ribosomal_L21e // Ribosomal protein L21e;2.7e-69 IPB001147 // Ribosomal protein L21E;2.5e-45 d1jj2p_ // b.34.5.1 // Ribosomal proteins L21e ;9.96e-31 --- --- "20891506 // similar to data source:MGD, source key:MGI:1278340, evidence:ISS~putative~ribosomal protein L21 [Mus musculus];2e-90 /// 18104948 // ribosomal protein L21; 60S ribosomal protein L21 [Homo sapiens];2e-90" Q9UDT4 // Gene-TRE:WUGSC:H_RG095A14.1 RIBOSOMAL PROTEIN L21. length=160;4e-86 /// RL21_HUMAN // SW:Q16699 Gene:RPL21 60S ribosomal protein L21. length=159;6e-86 /// Q9CQM8 // Gene-TRE:RPL21 Gene-TRE:8430440E03RIK RIBOSOMAL PROTEIN L21. length=160;1e-86 /// RL21_MOUSE // Gene:RPL21 60S RIBOSOMAL PROTEIN L21. length=159;4e-85 /// RL21_CAEEL // Gene:RPL-21 Gene:C14B9.7 60S ribosomal protein L21. length=160;2e-49 /// R21B_YEAST // Gene:RPL21B Gene:YPL079W Gene:LPF6W 60S ribosomal protein L21-B. length=160;3e-49 /// R21A_YEAST // Gene:RPL21A Gene:URP1 Gene:YBR191W Gene:YBR1401 60S RIBOSOMAL PROTEIN L21-A. length=160;2e-49 /// Q9V9M7 // Gene-TRE:CG12775 RIBOSOMAL PROTEIN L21. length=159;6e-62 /// RL21_RAT // Gene:RPL21 60S RIBOSOMAL PROTEIN L21. length=159;4e-85 "M27905_at RG-U34A // ribosomal protein L21 Curated Ortholog /// rc_AA849648_at RG-U34A // ribosomal protein L21 Curated Ortholog /// rc_AA849648_g_at RG-U34A // ribosomal protein L21 Curated Ortholog /// rc_AI231127_at RG-U34C // ESTs, Moderately similar to transforming growth factor, beta induced, 68 kDa [Mus musculus] [M.musculus] Curated Ortholog /// rc_AI070653_at RG-U34C // ribosomal protein L21 Curated Ortholog /// 1398764_at RAE230A // ribosomal protein L21 Curated Ortholog /// 1371913_at RAE230A // ESTs, Moderately similar to transforming growth factor, beta induced, 68 kDa [Mus musculus] [M.musculus] Curated Ortholog /// 1429077_x_at MOE430A // ribosomal protein L21 Curated Ortholog /// 96290_f_at MG-U74Av2 // ribosomal protein L21 Curated Ortholog /// 1423070_at MOE430A // ribosomal protein L21 Curated Ortholog /// U93863_s_at Mu11KsubA // ribosomal protein L21 Curated Ortholog /// 1455767_x_at MOE430A // ribosomal protein L21 Curated Ortholog /// 1459002_at MOE430B // ribosomal protein L21 Curated Ortholog /// 133729_at MG-U74Cv2 // ribosomal protein L21 Curated Ortholog" chr1q32.3 // 208068081-208068578 // - // 98 /// chr10q26.12 // 121357856-121358353 // - // 98 /// chr12q21.2 // 77396528-77397025 // + // 97 /// chr13q12.2 // 21807898-21810653 // + // 97 /// chr16p13.2 // 9349872-9350369 // - // 98 /// chr4q28.1 // 129013396-129013893 // - // 97 /// chr7p21.1 // 19686707-19687204 // + // 98 Hs.350077 // 4 // NM_000982 // ribosomal protein L21 // chr7 // 19686701-19687258 // + 200013_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000986.1 "gb:NM_000986.1 /DEF=Homo sapiens ribosomal protein L24 (RPL24), mRNA. /FEA=mRNA /GEN=RPL24 /PROD=ribosomal protein L24 /DB_XREF=gi:4506618 /UG=Hs.184582 ribosomal protein L24 /FL=gb:BC000690.1 gb:M94314.1 gb:NM_000986.1" g4506618 Hs.184582.0 --- ribosomal protein L24 RPL24 Chr:3q12 Hs.184582 6152 P38663 --- --- ENSG00000114391 --- NM_000986 // ribosomal protein L24 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR000988 // Ribosomal protein L24E Ribosomal_L24e // Ribosomal protein L24e;5.4e-50 IPB001380 // Ribosomal protein L13e;0.0022 --- --- --- 20977585 // 60S ribosomal protein L24 [Danio rerio];7e-76 /// 4506619 // ribosomal protein L24; 60S ribosomal protein L24; ribosomal protein L30 [Homo sapiens];4e-84 Q9VJY6 // Gene-TRE:CG9282 CG9282 PROTEIN. length=155;8e-55 /// RL24_HUMAN // Gene:RPL24 60S ribosomal protein L24 (L30). length=157;1e-85 /// RL24_HUMAN // Gene:RPL24 60S ribosomal protein L24 (L30). length=157;3e-85 /// RL24_HUMAN // Gene:RPL24 60S ribosomal protein L24 (L30). length=157;5e-85 /// Q9CS31 // Gene-TRE:0610008L05RIK 0610008L05RIK PROTEIN (FRAGMENT). length=67;3e-35 rc_AA859318_at RG-U34C // 89.73% ribosomal protein L24 Putative Ortholog /// 1396812_at RAE230B // 89.73% ribosomal protein L24 Putative Ortholog /// rc_AA817997_at RG-U34A // 89.73% ribosomal protein L24 Putative Ortholog /// rc_AA817997_g_at RG-U34A // 89.73% ribosomal protein L24 Putative Ortholog /// 1398854_at RAE230A // 89.73% ribosomal protein L24 Putative Ortholog /// 168684_i_at MG-U74Cv2 // ribosomal protein L24 Curated Ortholog /// w97389_at Mu11KsubB // ribosomal protein L24 Curated Ortholog /// 1447653_x_at MOE430A // ribosomal protein L24 Curated Ortholog /// 161127_i_at MG-U74Av2 // ribosomal protein L24 Curated Ortholog /// 1460201_a_at MOE430A // ribosomal protein L24 Curated Ortholog chr3q12.3 // 100831303-100835239 // - // 98 /// chr6p21.1 // 42920544-42920909 // - // 98 --- 200014_s_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004500.1 "gb:NM_004500.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein C (C1C2) (HNRPC), mRNA. /FEA=mRNA /GEN=HNRPC /PROD=heterogeneous nuclear ribonucleoprotein C(C1C2) /DB_XREF=gi:4758543 /UG=Hs.182447 heterogeneous nuclear ribonucleoprotein C (C1C2) /FL=gb:BC003394.1 gb:M16342.1 gb:NM_004500.1" g4758543 Hs.182447.0 "1500070376 (2 transcripts, 1 gene cluster)" heterogeneous nuclear ribonucleoprotein C (C1/C2) HNRPC Chr:14q11.1 Hs.406125 3183 P07910 --- --- ENSG00000092199 --- NM_004500 // heterogeneous nuclear ribonucleoprotein C isoform b /// NM_031314 // heterogeneous nuclear ribonucleoprotein C isoform a 6371 // mRNA splicing // predicted/computed 5634 // nucleus // predicted/computed 3723 // RNA binding // not recorded /// 8436 // heterogeneous nuclear ribonucleoprotein // not recorded /// 3676 // nucleic acid binding // extended:Unknown; rrm; 3.1e-16 RNA-binding protein // not recorded RNA processing/modification // predicted/computed /// RNA splicing // predicted/computed RNA-associated // not recorded --- Nuclear // predicted/computed --- --- IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;3.1e-16" --- --- --- --- "4758544 // heterogeneous nuclear ribonucleoprotein C, isoform b; nuclear ribonucleoprotein particle C1 protein; nuclear ribonucleoprotein particle C2 protein [Homo sapiens];e-162 /// 20455507 // Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 / hnRNP C2);e-169 /// 14110428 // heterogeneous nuclear ribonucleoprotein C, isoform a; nuclear ribonucleoprotein particle C1 protein; nuclear ribonucleoprotein particle C2 protein [Homo sapiens];e-170 /// 13097279 // heterogeneous nuclear ribonucleoprotein C (C1/C2) [Homo sapiens];e-161" Q96HK7 // HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C (C1/C2). length=306;1e-159 /// Q99KE2 // Gene-TRE:HNRPC HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C. length=292;1e-153 /// ROCL_HUMAN // Gene:dJ845O24.4 Heterogeneous nuclear ribonucleoprotein C-like (hnRNP core protein C- like). length=293;1e-146 /// Q96HM4 // HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C (C1/C2). length=293;1e-161 /// Q9CY83 // Gene-TRE:HNRPC Gene-TRE:HNRNPC HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C. length=293;1e-156 /// Q9CQT3 // Gene-TRE:HNRPC Gene-TRE:HNRNPC HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C. length=300;1e-154 /// ROC_MOUSE // SW:Q9CY83 SW:Q9CQT3 Gene:HNRPC Gene:HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 / hnRNP C2). length=313;1e-151 /// Q9BTS3 // HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C (C1/C2). length=293;1e-161 /// ROC_HUMAN // SW:P22628 SW:Q96IY5 SW:Q96HK7 SW:Q96HM4 SW:Q9BTS3 Gene:HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 / hnRNP C2). length=306;1e-159 /// Q96IY5 // SIMILAR TO HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C. length=306;1e-158 rc_AI233740_at RG-U34C // 83.89% aldose reductase-like protein Putative Ortholog /// 1370902_at RAE230A // 83.89% aldose reductase-like protein Putative Ortholog /// C80267_rc_f_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// aa543665_i_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// 1460240_a_at MOE430A // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// aa674148_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// 165278_r_at MG-U74Bv2 // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// 160199_at MG-U74Av2 // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// aa543665_f_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// 1418693_at MOE430A // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// C80478_rc_f_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein C Curated Ortholog chr14q11.2 // 15466029-15466354 // - // 100 /// chr2q32.2 // 189491913-189492238 // + // 99 Hs.406125 // 5 // NM_004500 // heterogeneous nuclear ribonucleoprotein C (C1/C2) // chr14 // 15465987-15524855 // - /// Hs.406125 // 5 // NM_031314 // heterogeneous nuclear ribonucleoprotein C (C1/C2) // chr14 // 15465987-15524855 // - 200015_s_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004404.1 "gb:NM_004404.1 /DEF=Homo sapiens neural precursor cell expressed, developmentally down-regulated 5 (NEDD5), mRNA. /FEA=mRNA /GEN=NEDD5 /PROD=neural precursor cell expressed, developmentallydown-regulated 5 /DB_XREF=gi:4758157 /UG=Hs.155595 neural precursor cell expressed, developmentally down-regulated 5 /FL=gb:D28540.1 gb:NM_004404.1 gb:D63878.1" g4758157 Hs.155595.0 "1500070377 (2 transcripts, 1 gene cluster)" "neural precursor cell expressed, developmentally down-regulated 5" NEDD5 Chr:2q37 Hs.155595 4735 AAH33559 /// Q15019 /// Q96CB0 --- --- ENSG00000168385 --- "NM_004404 // neural precursor cell expressed, developmentally down-regulated 5" --- --- --- --- --- --- --- --- --- --- IPR000038 // Cell division/GTP binding protein GTP_CDC // Cell division protein;7.3e-203 IPB000765 // GTP1/OBG family;0.00012 d1h65a_ // c.37.1.8 // Chloroplast protein translocon GTPase Toc34 ;3.99e-27 --- --- "4758158 // neural precursor cell expressed, developmentally down-regulated 5 [Homo sapiens];0.0 /// 15680208 // Similar to neural precursor cell expressed, developmentally down-regulated 5 [Homo sapiens];0.0" "SEP2_MOUSE // Gene:SEPT2 Gene:NEDD5 Gene:NEDD-5 SEPTIN 2 (NEDD5 PROTEIN). length=361;0 /// O95648 // HYPOTHETICAL 17.0 KDA PROTEIN. length=150;1e-56 /// Q9H5B2 // Gene-TRE:BA291L22.2 BA291L22.2 (SIMILAR TO CDC10 (CELL DIVISION CYCLE 10, S. CEREVISIAE, HOMOLOG)) (FRAGMENT). length=114;9e-31 /// Q96CB0 // SIMILAR TO NEURAL CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED 5. length=361;0 /// Q91Y81 // Gene-TRE:VESP11 VASCULAR ENDOTHELIAL CELL SPECIFIC PROTEIN 11. length=361;0 /// SEP5_MOUSE // Gene:SEPT5 Gene:PNUTL1 SEPTIN 5 (PEANUT-LIKE PROTEIN 1) (CELL DIVISION CONTROL RELATED PROTEIN 1) (CDCREL-1) (FRAGMENT). length=347;1e-119 /// SEP2_HUMAN // SW:Q14132 Gene:SEPT2 Gene:NEDD5 Gene:DIFF6 Gene:KIAA0158 Septin 2 (NEDD5 protein homolog). length=361;0" 1368984_at RAE230A // 89.77% septin 2 Putative Ortholog /// 1388389_at RAE230A // 89.77% septin 2 Putative Ortholog /// rc_AI179570_at RG-U34C // 89.77% septin 2 Putative Ortholog /// 1423472_at MOE430A // septin 2 Curated Ortholog /// 97543_at MG-U74Av2 // septin 2 Curated Ortholog /// 1423473_at MOE430A // septin 2 Curated Ortholog /// D49382_s_at Mu11KsubA // septin 2 Curated Ortholog chr2q37.3 // 239999937-240000365 // - // 100 "Hs.155595 // 3 // NM_004404 // neural precursor cell expressed, developmentally down-regulated 5 // chr2 // 239999886-240038648 // -" 200016_x_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_002136.1 "gb:NM_002136.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein A1 (HNRPA1), mRNA. /FEA=mRNA /GEN=HNRPA1 /PROD=heterogeneous nuclear ribonucleoprotein A1 /DB_XREF=gi:4504444 /UG=Hs.249495 heterogeneous nuclear ribonucleoprotein A1 /FL=gb:NM_002136.1" g4504444 Hs.249495.0 "1500070378 (16 transcripts, 11 gene clusters)" heterogeneous nuclear ribonucleoprotein A1 HNRPA1 Chr:12q13.1 Hs.376844 3178 AAH02355 /// AAH09600 /// AAH12158 /// AAH33714 /// P09651 /// Q9BSM5 --- --- ENSG00000135486 --- NM_002136 // heterogeneous nuclear ribonucleoprotein A1 isoform a /// NM_031157 // heterogeneous nuclear ribonucleoprotein A1 isoform b 6405 // RNA-nucleus export // predicted/computed /// 6397 // mRNA processing // predicted/computed 5737 // cytoplasm // experimental evidence /// 5654 // nucleoplasm // experimental evidence 3676 // nucleic acid binding // extended:Unknown; rrm; 7.2e-22 /// 3723 // RNA binding // experimental evidence /// 8436 // heterogeneous nuclear ribonucleoprotein // experimental evidence RNA-binding protein // experimental evidence Nuclear-cytoplasmic transport // predicted/computed /// RNA processing/modification // predicted/computed RNA-associated // experimental evidence --- Cytoplasmic // experimental evidence /// Nuclear // experimental evidence --- --- IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;6.8e-50" IPB002989 // Mycobacterial pentapeptide repeats;0.00079 /// IPB001285 // Synaptophysin/synaptoporin;0.0019 "d1ha1_1 // d.58.7.1 // Nuclear ribonucleoprotein A1, RNP A1, UP1 ;4.92e-26 /// d1ha1_1 // d.58.7.1 // Nuclear ribonucleoprotein A1, RNP A1, UP1 ;1.5e-25" --- --- "8393547 // heterogeneous nuclear ribonucleoprotein A1 [Rattus norvegicus];0.0 /// 133254 // Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1);0.0 /// 4504445 // heterogeneous nuclear ribonucleoprotein A1, isoform a; nuclear ribonucleoprotein particle A1 protein; helix-destabilizing protein; single-strand DNA-binding protein UP1; heterogeneous nuclear ribonucleoprotein core protein A1; heterogeneous nuclear ribonucleoprotein A1B protein; heterogeneous nuclear ribonucleoprotein B2 protein [Homo sapiens];0.0 /// 14043070 // heterogeneous nuclear ribonucleoprotein A1, isoform b; nuclear ribonucleoprotein particle A1 protein; helix-destabilizing protein; single-strand DNA-binding protein UP1; heterogeneous nuclear ribonucleoprotein core protein A1; heterogeneous nuclear ribonucleoprotein A1B protein; heterogeneous nuclear ribonucleoprotein B2 protein [Homo sapiens];0.0" "ROA2_MOUSE // Gene:HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP B1). length=341;1e-119 /// ROA1_RAT // Gene:HNRPA1 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 (HELIX-DESTABILIZING PROTEIN) (SINGLE-STRAND BINDING PROTEIN) (HNRNP CORE PROTEIN A1) (HDP). length=319;0 /// Q9BSM5 // HYPOTHETICAL 31.8 KDA PROTEIN (FRAGMENT). length=298;1e-179 /// Q9H4S1 // Gene-TRE:BA438F9.2 BA438F9.2 (NOVEL PROTEIN SIMILAR TO HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 (HNRPA1)) (FRAGMENT). length=70;4e-35 /// Q91ZR9 // Gene-TRE:HNRPA2B1 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A2/B1 (FRAGMENT). length=342;1e-119 /// ROA1_MACMU // Gene:HNRPA1 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 (HELIX-DESTABILIZING PROTEIN) (SINGLE-STRAND BINDING PROTEIN) (HNRNP CORE PROTEIN A1). length=319;0 /// Q9CRI0 // Gene-TRE:2410013L13RIK ES CELLS CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:2410013L13, FULL INSERT SEQUENCE (FRAGMENT). length=139;8e-66 /// ROA1_HUMAN // Gene:HNRPA1 Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1). length=371;0 /// ROA1_MOUSE // SW:P97312 Gene:HNRPA1 Gene:FLI-2 Gene:TIS Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed). length=319;0 /// O95024 // Gene-TRE:WUGSC:H_DJ1093O17.1 WUGSC:H_DJ1093O17.1 PROTEIN. length=317;1e-175" rc_AA965147_at RG-U34A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1387872_at RAE230A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// M12156_at RG-U34A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1375612_at RAE230A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1455305_x_at MOE430A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1430020_x_at MOE430A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 92724_at MG-U74Av2 // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// d86729_s_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1455740_at MOE430A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1430019_a_at MOE430A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1436549_a_at MOE430A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 97272_at MG-U74Av2 // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1423531_a_at MOE430A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 100371_at MG-U74Av2 // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog chr12q13.13 // 54792000-54792514 // + // 100 /// chr16q12.2 // 55808766-55809283 // - // 98 /// chr18q12.1 // 29810731-29811251 // - // 98 /// chr2q33.1 // 200653575-200654096 // + // 99 /// chr8q23.3 // 115102972-115103488 // - // 98 Hs.376844 // 7 // NM_002136 // heterogeneous nuclear ribonucleoprotein A1 // chr12 // 54788001-54792544 // + /// Hs.376844 // 7 // NM_031157 // heterogeneous nuclear ribonucleoprotein A1 // chr12 // 54788001-54792544 // + 200017_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_002954.1 "gb:NM_002954.1 /DEF=Homo sapiens ribosomal protein S27a (RPS27A), mRNA. /FEA=mRNA /GEN=RPS27A /PROD=ribosomal protein S27a /DB_XREF=gi:4506712 /UG=Hs.3297 ribosomal protein S27a /FL=gb:BC001392.1 gb:BC005328.1 gb:NM_002954.1" g4506712 Hs.3297.0 --- ribosomal protein S27a RPS27A Chr:2p16 Hs.311640 6233 AAB21188 /// CAA44911 /// P02248 /// P14798 --- --- --- --- NM_002954 // ubiquitin and ribosomal protein S27a precursor --- --- --- --- --- --- --- --- Proteasome_Degradation --- IPR000626 // Ubiquitin domain /// IPR002906 // Ribosomal protein S27a Ribosomal_S27 // Ribosomal protein S27a;2.2e-32 /// ubiquitin // Ubiquitin family;1.3e-42 PR01475 // Parkin signature;8.4e-06 d1ubi__ // d.15.1.1 // Ubiquitin ;7.74e-33 --- --- 600539 // ubiquitin;6e-88 /// 4506713 // ubiquitin and ribosomal protein S27a precursor; ubiquitin carboxyl extension protein 80; 40S ribosomal protein S27a; ubiquitin; ubiquitin-CEP80 [Homo sapiens];6e-88 Q93725 // Gene-TRE:F45H11.2 F45H11.2 PROTEIN. length=77;5e-22 /// UBIQ_YEAST // Gene:UBI1 Gene:RPL40A Gene:YIL148W Gene:UBI2 Gene:RPL40B Gene:YKR094C) AND Gene:UBI3 Gene:RPS31 Gene:YLR167W Gene:L9470.14 Gene:UBI4 Gene:SCD2 Gene:YLL039C Ubiquitin. length=76;3e-36 /// RS37_YEAST // SW:P14800 Gene:UBI3 Gene:RPS31 Gene:YLR167W Gene:L9470.14 40S ribosomal protein S37 (CEP76) (YS24). length=76;6e-26 /// Q9BQ77 // RIBOSOMAL PROTEIN S27A. length=156;7e-89 /// R27A_HUMAN // SW:Q9BQ77 Gene:RPS27A Gene:UBA80 Gene:UBCEP1 40S ribosomal protein S27a. length=80;1e-44 /// UBIQ_CAEEL // Gene:UBQ-1 Gene:UBIA Gene:F25B5.4 Gene:UBQ-2 Gene:UBIB UBIQUITIN. length=76;2e-36 /// UBIQ_SOYBN // Ubiquitin. length=76;1e-35 /// Q24575 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 UBIQUITIN (FRAGMENT). length=76;4e-36 /// Q41965 // UBIQUITIN (FRAGMENT). length=68;6e-25 /// O65381 // Gene-TRE:F12F1.15 F12F1.15 PROTEIN. length=78;4e-19 /// UBIQ_HUMAN // SW:P02249 SW:P02250 SW:Q29120 SW:Q91887 SW:Q91888 Gene:UBA52 Gene:UBCEP2 Gene:UBB Gene:UBC Gene:UBA80 Gene:UBCEP1 Gene:RPS27A Ubiquitin. length=76;2e-37 /// Q03919 // Gene-TRE:RUB1 Gene-TRE:YDR139C HYPOTHETICAL 8.7 KDA PROTEIN. length=77;1e-17 /// UBIQ_DROME // SW:Q9VQX7 SW:Q9VKW6 Gene:RPL40 Gene:CG2960 Gene:RPS27A Gene:UBI-F80 Gene:UBI-F Gene:CG5271) AND Gene:UBI-P63E Gene:UBI-M Gene:CG11624 Ubiquitin. length=76;2e-37 /// Q9LDJ2 // F26F24.28 (F28C11.5). length=156;1e-71 /// Q9BX44 // Gene-TRE:BA92K2.2 BA92K2.2 (SIMILAR TO UBIQUITIN). length=156;2e-84 /// R27A_MOUSE // SW:Q9D2W3 Gene:RPS27A 40S ribosomal protein S27a. length=80;2e-44 /// Q8WYN8 // Gene-TRE:RPS27A RIBOSOMAL PROTEIN S27A (FRAGMENT). length=34;3e-12 /// Q41930 // POLYUBIQUITIN (FRAGMENT). length=38;1e-13 /// Q8WYN9 // Gene-TRE:RPS27A RIBOSOMAL PROTEIN S27A (FRAGMENT). length=121;6e-69 /// Q24577 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 UBIQUITIN (FRAGMENT). length=76;1e-36 /// UBIQ_HUMAN // SW:P02249 SW:P02250 SW:Q29120 SW:Q91887 SW:Q91888 Gene:UBA52 Gene:UBCEP2 Gene:UBB Gene:UBC Gene:UBA80 Gene:UBCEP1 Gene:RPS27A Ubiquitin. length=76;4e-37 /// P97621 // POLYUBIQUITIN (FRAGMENT). length=41;4e-17 /// Q07188 // Gene-TRE:UBI4 Gene-TRE:YLL039C UBIQUITIN. length=47;1e-18 /// Q43354 // UBIQUITINE (FRAGMENT). length=86;5e-31 /// R27A_DROME // SW:Q9VKW6 Gene:RPS27A Gene:UBI-M Gene:UB3-D Gene:UBI-F80 Gene:CG5271 40S RIBOSOMAL PROTEIN S27A. length=80;1e-35 /// Q42009 // UBIQUITIN (FRAGMENT). length=52;1e-15 /// Q24576 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 UBIQUITIN (FRAGMENT). length=75;7e-35 /// Q27927 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 UBIQUITIN (FRAGMENT). length=76;7e-37 /// R27A_MOUSE // SW:Q9D2W3 Gene:RPS27A 40S ribosomal protein S27a. length=80;6e-45 /// Q9VKW6 // Gene-TRE:RPS27A RPS27A PROTEIN. length=156;9e-80 /// UBIQ_HUMAN // SW:P02249 SW:P02250 SW:Q29120 SW:Q91887 SW:Q91888 Gene:UBA52 Gene:UBCEP2 Gene:UBB Gene:UBC Gene:UBA80 Gene:UBCEP1 Gene:RPS27A Ubiquitin. length=76;8e-38 /// NED8_HUMAN // Gene:NEDD8 Ubiquitin-like protein NEDD8. length=81;8e-21 1367624_at RAE230A // 89.58% activating transcription factor ATF-4 Putative Ortholog /// rc_AA891729_at RG-U34A // 89.58% ribosomal protein S27a Putative Ortholog /// rc_AI012335_at RG-U34B // 89.58% activating transcription factor ATF-4 Putative Ortholog /// 1367685_at RAE230A // 89.58% ribosomal protein S27a Putative Ortholog /// rc_AI179381_at RG-U34C // 89.58% activating transcription factor ATF-4 Putative Ortholog /// aa473182_f_at Mu11KsubA // ribosomal protein S27a Curated Ortholog /// 93030_at MG-U74Av2 // ribosomal protein S27a Curated Ortholog /// 1449196_a_at MOE430A // ribosomal protein S27a Curated Ortholog chr16q21 // 61175140-61175620 // - // 98 /// chr2p16.1 // 55646127-55648888 // + // 99 Hs.311640 // 2 // AK093614 // ribosomal protein S27a // chr2 // 55646008-55648929 // + 200018_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001017.1 "gb:NM_001017.1 /DEF=Homo sapiens ribosomal protein S13 (RPS13), mRNA. /FEA=mRNA /GEN=RPS13 /PROD=ribosomal protein S13 /DB_XREF=gi:4506684 /UG=Hs.165590 ribosomal protein S13 /FL=gb:BC000475.1 gb:L01124.1 gb:NM_001017.1" g4506684 Hs.165590.0 --- ribosomal protein S13 RPS13 Chr:11p15 Hs.165590 6207 Q02546 --- --- ENSG00000110700 --- NM_001017 // ribosomal protein S13 6412 // protein biosynthesis // predicted/computed 5843 // cytosolic small ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // not recorded /// Ribosomal subunit // not recorded Protein synthesis // not recorded Ribosome-associated // not recorded General cellular role // not recorded Cytoplasmic // not recorded --- --- IPR000589 // Ribosomal protein S15 Ribosomal_S15 // Ribosomal protein S15;3.3e-30 IPB000589 // Ribosomal protein S15;1.5e-26 d1a32__ // a.16.1.2 // Ribosomal protein S15 ;2.21e-08 --- --- 4506685 // ribosomal protein S13; 40S ribosomal protein S13 [Homo sapiens];3e-81 /// 1350933 // 40S RIBOSOMAL PROTEIN S13;6e-81 O81311 // Gene-TRE:F6N15.7 Gene-TRE:AT4G00100 F6N15.7 PROTEIN (PUTATIVE RIBOSOMAL PROTEIN S13). length=150;2e-62 /// Q93V69 // AT3G60770/T4C21_180. length=151;1e-64 /// RS13_DROME // SW:Q9VLN5 Gene:RPS13 Gene:RP17 Gene:M(2)32A Gene:CG13389 40S ribosomal protein S13. length=150;1e-73 /// RS13_HUMAN // SW:P19116 SW:Q29200 Gene:RPS13 40S ribosomal protein S13. length=150;3e-82 /// RS13_ARATH // Gene:RPS13 40S RIBOSOMAL PROTEIN S13 (FRAGMENT). length=150;1e-64 /// Q93WJ4 // AT3G60770/T4C21_180. length=151;5e-64 /// Q9LZY6 // Gene-TRE:T4C21_180 RIBOSOMAL PROTEIN S13-LIKE. length=150;7e-62 /// RS13_CAEEL // Gene:RPS-13 Gene:C16A3.9 40S ribosomal protein S13. length=150;2e-65 /// Q921R2 // SIMILAR TO RIBOSOMAL PROTEIN S13. length=140;1e-76 /// RS13_HUMAN // SW:P19116 SW:Q29200 Gene:RPS13 40S ribosomal protein S13. length=150;1e-81 /// Q9SLR4 // Gene-TRE:ATRPS13A Gene-TRE:F6N15.7 CYTOPLASMIC RIBOSOMAL PROTEIN S13 (AT4G00100/F6N15_7) (SIMILAR TO RIBOSOMAL PROTEIN S13). length=151;3e-65 /// Q9VLN5 // Gene-TRE:RPS13 RPS13 PROTEIN. length=151;3e-74 /// RS13_YEAST // Gene:RPS13 Gene:RPS13C Gene:YDR064W Gene:YD9609.18 Gene:D4252 40S RIBOSOMAL PROTEIN S13 (S27A) (YS15). length=150;2e-65 "rc_AI233114_at RG-U34C // 85.71% ESTs, Highly similar to S29510 ubiquinol--cytochrome-c reductase (EC 1.10.2.2) core protein II precursor - rat [R.norvegicus] Putative Ortholog /// rc_AI235358_at RG-U34A // 85.71% ESTs, Highly similar to S29510 ubiquinol--cytochrome-c reductase (EC 1.10.2.2) core protein II precursor - rat [R.norvegicus] Putative Ortholog /// 1382280_at RAE230B // 85.71% ESTs, Highly similar to S29510 ubiquinol--cytochrome-c reductase (EC 1.10.2.2) core protein II precursor - rat [R.norvegicus] Putative Ortholog /// rc_AI639224_at RG-U34A // 85.71% ribosomal protein S13 Putative Ortholog /// 1398872_at RAE230A // 85.71% ribosomal protein S13 Putative Ortholog /// rc_AI235358_at RT-U34 // 85.71% ESTs, Highly similar to S29510 ubiquinol--cytochrome-c reductase (EC 1.10.2.2) core protein II precursor - rat [R.norvegicus] Putative Ortholog /// 1373362_at RAE230A // 85.71% ESTs, Highly similar to S29510 ubiquinol--cytochrome-c reductase (EC 1.10.2.2) core protein II precursor - rat [R.norvegicus] Putative Ortholog /// Msa.22366.0_s_at Mu11KsubB // ribosomal protein S13 Curated Ortholog /// aa543724_f_at Mu11KsubA // ribosomal protein S13 Curated Ortholog /// 1415912_a_at MOE430A // ribosomal protein S13 Curated Ortholog /// 134043_at MG-U74Cv2 // ribosomal protein S13 Curated Ortholog /// 93027_r_at MG-U74Av2 // ribosomal protein S13 Curated Ortholog /// 1448142_x_at MOE430A // ribosomal protein S13 Curated Ortholog /// 1438794_x_at MOE430A // ribosomal protein S13 Curated Ortholog /// 1415913_at MOE430A // ribosomal protein S13 Curated Ortholog" chr11p15.1 // 18039735-18042955 // - // 100 Hs.165590 // 5 // NM_001017 // ribosomal protein S13 // chr11 // 18039699-18042981 // - 200019_s_at HG-U133B Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001997.1 "gb:NM_001997.1 /DEF=Homo sapiens Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 (FAU), mRNA. /FEA=mRNA /GEN=FAU /PROD=Finkel-Biskis-Reilly murine sarcoma virus(FBR-MuSV) ubiquitously expressed (fox derived); ribosomalprotein S30 /DB_XREF=gi:4503658 /UG=Hs.177415 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 /FL=gb:NM_001997.1" g4503658 Hs.177415.0 "1500070379 (2 transcripts, 1 gene cluster)" Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 FAU Chr:11q13 Hs.177415 2197 P35544 /// Q05472 /// Q9H5V4 --- --- ENSG00000149806 --- NM_001997 // ubiquitin-like protein fubi and ribosomal protein S30 precursor 6412 // protein biosynthesis // predicted/computed 5737 // cytoplasm // predicted/computed /// 5840 // ribosome // predicted/computed 5551 // ubiquitin // predicted/computed /// 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed Protein conjugation factor // predicted/co