Probe Set ID Chip Organism Annotation Date Sequence Type Sequence Source Sequence Derived From Sequence Description Sequence ID Transcript ID Group ID Title Gene Symbol Location Unigene LocusLink SwissProt EC Number OMIM Ensembl ID References Full Length Ref. Sequences Biological Process (GO) Cellular Component (GO) Molecular Function (GO) Biochemical Function (Proteome) Cellular Role (Proteome) Molecular Localization (Proteome) Organismal Role (Proteome) Subcellular Localization (Proteome) Pathways GenMAPP Pathways KEGG InterPro Pfam BLOCKS SCOP TMM Protein Families Protein Similarities BLASTP (GenBank NR) Protein Similarities BLASTx (SwissProt/TrEMBL) Orthologs/Homologs Genome Alignment Overlapping Transcripts 1007_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank U48705 "U48705 /FEATURE=mRNA /DEFINITION=HSU48705 Human receptor tyrosine kinase DDR gene, complete cds" U48705mRNA U48705mRNA 2010634 "discoidin domain receptor family, member 1" DDR1 Chr:6p21.3 Hs.75562 780 Q08345 EC:2.7.1.112 --- ENSG00000137332 --- NM_001954 // discoidin receptor tyrosine kinase isoform b /// NM_013993 // discoidin receptor tyrosine kinase isoform a /// NM_013994 // discoidin receptor tyrosine kinase isoform c 7155 // cell adhesion // predicted/computed 5887 // integral to plasma membrane // predicted/computed 4714 // transmembrane receptor protein tyrosine kinase // predicted/computed Receptor (signalling) // predicted/computed /// Transferase // not recorded --- Integral membrane // predicted/computed --- --- --- --- "IPR001245 // Tyrosine protein kinase /// IPR002011 // Receptor tyrosine kinase, class II /// IPR000421 // Coagulation factor 5/8 type C domain (FA58C) /// IPR000719 // Eukaryotic protein kinase" pkinase // Protein kinase domain;1.8e-68 /// pkinase // Protein kinase domain;2.2e-67 /// pkinase // Protein kinase domain;9.3e-70 /// F5_F8_type_C // F5/8 type C domain;2.9e-59 IPB000959 // POLO box duplicated region;0.0083 /// IPB000959 // POLO box duplicated region;0.0079 d1iepa_ // d.144.1.2 // Abelsone tyrosine kinase (abl) ;2.82e-66 /// d1iepa_ // d.144.1.2 // Abelsone tyrosine kinase (abl) ;1.54e-67 /// d1czsa_ // b.18.1.2 // C2 domain of factor V ;9.53e-45 /// d1iepa_ // d.144.1.2 // Abelsone tyrosine kinase (abl) ;3e-67 numtm:1;Nin-prob:0.11013;type:tm; /// numtm:1;Nin-prob:0.11542;type:tm; /// numtm:1;Nin-prob:0.09917;type:tm; EC:2.7.1.37 // TGR2_HUMAN TGF-BETA RECEPTOR TYPE II PRECURSOR (EC 2.7.1.37) (TGFR-2) (TGF-BETA TYPE II RECEPTOR).;2.59e-94 /// EC:2.7.1.37 // TGR2_HUMAN TGF-BETA RECEPTOR TYPE II PRECURSOR (EC 2.7.1.37) (TGFR-2) (TGF-BETA TYPE II RECEPTOR).;9.84e-91 /// EC:2.7.1.37 // TGR2_HUMAN TGF-BETA RECEPTOR TYPE II PRECURSOR (EC 2.7.1.37) (TGFR-2) (TGF-BETA TYPE II RECEPTOR).;1.16e-92 /// Hanks:DDR // HUMRTK_1 (DDR) KINASES:5.11.1 | PTK Group B membrane spanning protein tyrosine kinases.PTK XX DDR/TKT family .DDR;1e-158 /// Hanks:DDR // HUMRTK_1 (DDR) KINASES:5.11.1 | PTK Group B membrane spanning protein tyrosine kinases.PTK XX DDR/TKT family .DDR;1e-172 /// Hanks:DDR // HUMRTK_1 (DDR) KINASES:5.11.1 | PTK Group B membrane spanning protein tyrosine kinases.PTK XX DDR/TKT family .DDR;1e-156 "7669483 // discoidin receptor tyrosine kinase isoform a; PTK3A protein tyrosine kinase 3A; cell adhesion kinase; epithelial discoidin domain receptor 1; neurotrophic tyrosine kinase, receptor, type 4; neuroepithelial tyrosine kinase; mammarian carcinoma kinase 10 [Homo sapiens];0.0 /// 1362916 // protein-tyrosine kinase (EC 2.7.1.112) trkE precursor - human;0.0 /// 7669487 // discoidin receptor tyrosine kinase isoform b; PTK3A protein tyrosine kinase 3A; cell adhesion kinase; epithelial discoidin domain receptor 1; neurotrophic tyrosine kinase, receptor, type 4; neuroepithelial tyrosine kinase; mammarian carcinoma kinase 10 [Homo sapiens];0.0 /// 7669485 // discoidin receptor tyrosine kinase isoform c; PTK3A protein tyrosine kinase 3A; cell adhesion kinase; epithelial discoidin domain receptor 1; neurotrophic tyrosine kinase, receptor, type 4; neuroepithelial tyrosine kinase; mammarian carcinoma kinase 10 [Homo sapiens];0.0" DDR1_MOUSE // Gene:DDR1 Gene:EDDR1 Gene:CAK Gene:MPK6 Epithelial discoidin domain receptor 1 precursor (EC 2.7.1.112) (Tyrosine-protein kinase CAK) (Cell adhesion kinase) (Tyrosine kinase DDR) (Discoidin receptor tyrosine kinase) (Protein-tyrosine kinase MPK-6). length=911;0 /// O55059 // AXL RECEPTOR TYROSINE KINASE (FRAGMENT). length=78;1e-16 /// Q26296 // Gene-TRE:TK4 Gene-TRE:DTK4 PROTEIN-TYROSINE KINASE (FRAGMENT). length=56;6e-12 /// Q61986 // Gene-TRE:NSK1 NSK1 PROTEIN (FRAGMENT). length=67;2e-19 /// DDR1_RAT // Gene:DDR1 Gene:EDDR1 Gene:PTK3 Epithelial discoidin domain receptor 1 precursor (EC 2.7.1.112) (Tyrosine-protein kinase CAK) (Cell adhesion kinase) (Tyrosine kinase DDR) (Discoidin receptor tyrosine kinase) (Protein-tyrosine kinase PTK-3). length=910;0 /// O35407 // Gene-TRE:NEP RECEPTOR-LIKE TYROSINE KINASE. length=911;0 /// Q9UD86 // PROTEIN TYROSINE KINASE (FRAGMENT). length=52;1e-24 /// Q9UD37 // HGK2=TRKA NERVE GROWTH FACTOR TYROSINE KINASE HOMOLOG. length=54;8e-26 /// DDR1_HUMAN // SW:Q14196 SW:Q16562 Gene:DDR1 Gene:EDDR1 Gene:CAK Gene:TRKE Gene:RTK6 Epithelial discoidin domain receptor 1 precursor (EC 2.7.1.112) (Tyrosine-protein kinase CAK) (Cell adhesion kinase) (Tyrosine kinase DDR) (Discoidin receptor tyrosine kinase) (TRK E) (Protein-tyrosine kinase RTK 6) (CD167a antigen). length=913;0 /// Q9R1G9 // INSULIN RECEPTOR (FRAGMENT). length=69;1e-14 /// Q96T62 // Gene-TRE:DDR1 DISCOIDIN DOMAIN RECEPTOR DDR1D (FRAGMENT). length=82;1e-40 /// Q9UD36 // MAMMARY CARCINOMA KINASE 10B (FRAGMENT). length=50;7e-24 "1370216_at RAE230A // 86.31% Discoidin domain receptor family, member 1 Putative Ortholog /// L26525_at RG-U34A // 86.31% Discoidin domain receptor family, member 1 Putative Ortholog /// 100155_at MG-U74Av2 // discoidin domain receptor family, member 1 Curated Ortholog /// 1415797_at MOE430A // discoidin domain receptor family, member 1 Curated Ortholog /// 1435820_x_at MOE430A // discoidin domain receptor family, member 1 Curated Ortholog /// 1415798_at MOE430A // discoidin domain receptor family, member 1 Curated Ortholog /// 1439382_x_at MOE430A // discoidin domain receptor family, member 1 Curated Ortholog /// 1438367_x_at MOE430A // discoidin domain receptor family, member 1 Curated Ortholog /// 1459990_at MOE430A // discoidin domain receptor family, member 1 Curated Ortholog /// l57509_s_at Mu11KsubA // discoidin domain receptor family, member 1 Curated Ortholog /// 1456226_x_at MOE430A // discoidin domain receptor family, member 1 Curated Ortholog /// 1437619_x_at MOE430A // discoidin domain receptor family, member 1 Curated Ortholog" chr6p21.33 // 30923123-30923696 // + // 99 "Hs.75562 // 8 // NM_001954 // discoidin domain receptor family, member 1 // chr6 // 30911980-30923746 // + /// Hs.75562 // 8 // NM_013993 // discoidin domain receptor family, member 1 // chr6 // 30911980-30923746 // + /// Hs.75562 // 8 // NM_013994 // discoidin domain receptor family, member 1 // chr6 // 30911980-30923746 // +" 1053_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank M87338 "M87338 /FEATURE= /DEFINITION=HUMA1SBU Human replication factor C, 40-kDa subunit (A1) mRNA, complete cds" M87338 M87338 --- "replication factor C (activator 1) 2, 40kDa" RFC2 Chr:7q11.23 Hs.139226 5982 P35250 --- 600404 ENSG00000049541 --- "NM_002914 // replication factor C (activator 1) 2, 40kDa" --- 5663 // DNA replication factor C complex // experimental evidence 3687 // DNA replication factor // not recorded /// 5524 // ATP binding // experimental evidence DNA polymerase or subunit // experimental evidence /// Activator // not recorded /// Transferase // experimental evidence DNA synthesis // experimental evidence DNA-associated (direct or indirect) // experimental evidence --- Nuclear // predicted/computed --- --- "IPR003959 // AAA ATPase, central region /// IPR000862 // Replication factor C conserved domain /// IPR003593 // AAA ATPase" AAA // ATPase family associated with various cellul;3.4e-05 IPB002894 // HypB/UreG nucleotide-binding domain;0.0083 d1iqpa1 // a.80.1.1 // Replication factor C ;2.9e-26 /// d1iqpa2 // c.37.1.13 // Replication factor C ;1.1e-51 --- EC:3.4.21.53 // LON_VIBPA ATP-DEPENDENT PROTEASE LA (EC 3.4.21.53).;5.41e-27 "539678 // replication factor C - human;0.0 /// 4506487 // replication factor C (activator 1) 2, 40kDa; replication factor C (activator 1) 2 (40kD) [Homo sapiens];0.0" "Q9NWI4 // CDNA FLJ20837 FIS, CLONE ADKA02602. length=208;7e-18 /// Q9UHS7 // PRO1992. length=52;2e-13 /// Q99K91 // SIMILAR TO REPLICATION FACTOR C (ACTIVATOR 1) 2 (40KD) (FRAGMENT). length=272;1e-150 /// AC14_MOUSE // Gene:RFC2 Activator 1 40 kDa subunit (Replication factor C 40 kDa subunit) (A1 40 kDa subunit) (RF-C 40 kDa subunit) (RFC40). length=349;0 /// Q96MM0 // CDNA FLJ32172 FIS, CLONE PLACE6000555. length=163;8e-17 /// Q9BU93 // SIMILAR TO REPLICATION FACTOR C (ACTIVATOR 1) 2 (40KD). length=320;1e-178 /// AC14_HUMAN // SW:P32846 Gene:RFC2 Activator 1 40 kDa subunit (Replication factor C 40 kDa subunit) (A1 40 kDa subunit) (RF-C 40 kDa subunit) (RFC40). length=354;0 /// Q9D0K3 // Gene-TRE:RFC2 Gene-TRE:2610008M13RIK 2610008M13RIK PROTEIN. length=349;0 /// Q9H6G8 // CDNA: FLJ22294 FIS, CLONE HRC04426. length=120;7e-18 /// Q9QXI2 // Gene-TRE:RFC2 REPLICATION FACTOR C SUBUNIT 2 (FRAGMENT). length=216;1e-117 /// Q9H7S6 // CDNA FLJ14310 FIS, CLONE PLACE3000271. length=120;2e-11" rc_AA899195_at RG-U34B // 87.05% replication factor C (activator 1) 2 (40kD) Putative Ortholog /// 1370910_at RAE230A // 87.05% replication factor C (activator 1) 2 (40kD) Putative Ortholog /// 1457669_x_at MOE430B // replication factor C (activator 1) 2 (40kD) Curated Ortholog /// Msa.9000.0_s_at Mu11KsubB // replication factor C (activator 1) 2 (40kD) Curated Ortholog /// 1417503_at MOE430A // replication factor C (activator 1) 2 (40kD) Curated Ortholog /// 160759_at MG-U74Av2 // replication factor C (activator 1) 2 (40kD) Curated Ortholog /// 1457638_x_at MOE430B // replication factor C (activator 1) 2 (40kD) Curated Ortholog chr7q11.23 // 72286554-72290190 // - // 95 "Hs.139226 // 3 // NM_002914 // replication factor C (activator 1) 2, 40kDa // chr7 // 72286247-72308977 // -" 117_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank X51757 X51757 /FEATURE=cds /DEFINITION=HSP70B Human heat-shock protein HSP70B' gene X51757cds X51757cds --- heat shock 70kDa protein 6 (HSP70B') HSPA6 Chr:1cen-qter Hs.3268 3310 AAH35665 /// P17066 /// Q9BT95 --- --- ENSG00000173110 --- NM_002155 // heat shock 70kDa protein 6 (HSP70B') 6951 // heat shock response // experimental evidence --- 3773 // heat shock protein // experimental evidence --- --- --- --- --- --- --- IPR001023 // Heat shock protein Hsp70 HSP70 // Hsp70 protein;0 IPB003494 // Cell division protein FtsA;0.0059 "d1ckra_ // e.20.1.1 // DnaK ;2.54e-69 /// d1hjoa1 // c.55.1.1 // Heat shock protein 70kDa, ATPase fragment ;1.55e-79" --- --- 4504515 // heat shock 70kDa protein 6 (HSP70B'); heat shock 70kD protein 6 (HSP70B'); Heat-shock 70kD protein-6 (HSP70B') [Homo sapiens];0.0 /// 23274232 // heat shock 70kDa protein 6 (HSP70B') [Homo sapiens];0.0 "Q9BIS5 // HEAT SHOCK PROTEIN HSP70AA. length=642;0 /// HS76_HUMAN // Gene:HSPA6 Gene:HSP70B' HEAT SHOCK 70 KDA PROTEIN 6 (HEAT SHOCK 70 KDA PROTEIN B'). length=643;0 /// Q9BIS1 // HEAT SHOCK PROTEIN HSP70BB. length=641;0 /// Q9R2A1 // Gene-TRE:HSP70-3 Gene-TRE:HSC70T SPERMATID-SPECIFIC HEAT SHOCK PROTEIN 70 (FRAGMENT). length=111;1e-46 /// HS74_YEAST // Gene:SSA4 Gene:YER103W HEAT SHOCK PROTEIN SSA4. length=641;0 /// HS73_YEAST // SW:P18862 Gene:SSA3 Gene:YBL075C Gene:YBL0610 Gene:YBL06.07 HEAT SHOCK PROTEIN SSA3. length=649;0 /// O88686 // Gene-TRE:HSPA1L Gene-TRE:HSC70T SPERMATID-SPECIFIC HEAT SHOCK PROTEIN 70. length=641;0 /// Q9BIR9 // HEAT SHOCK PROTEIN HSP70BC. length=641;0 /// HS71_YEAST // Gene:SSA1 Gene:YAL005C HEAT SHOCK PROTEIN SSA1 (HEAT SHOCK PROTEIN YG100). length=641;0 /// HS7A_DROME // SW:Q9VUA7 Gene:HSC70-1 Gene:HSC1 Gene:CG8937 HEAT SHOCK 70 KDA PROTEIN COGNATE 1 (HEAT SHOCK 70 KDA PROTEIN 70C). length=641;0 /// HS72_DROME // Gene:HSP70BA Gene:HSP70BB Gene:HSP70BC MAJOR HEAT SHOCK 70 KDA PROTEIN B (HEAT SHOCK PROTEIN 70B) (HSP70- 87C1). length=641;0 /// Q96IS6 // SIMILAR TO HEAT SHOCK COGNATE 71-KD PROTEIN. length=586;0 /// Q05830 // Gene-TRE:SSA1 Gene-TRE:YG100 Gene-TRE:YAL005C HEAT SHOCK PROTEIN YG100 (FRAGMENT). length=148;6e-59 /// Q9BT95 // SIMILAR TO HEAT SHOCK 70KD PROTEIN 6 (HSP70B') (FRAGMENT). length=145;4e-80 /// Q8UUJ8 // Gene-TRE:HSP70 STRESS PROTEIN HSP70. length=643;0 /// Q9BIS0 // HEAT SHOCK PROTEIN HSP70BC. length=641;0 /// Q9BIS3 // HEAT SHOCK PROTEIN HSP70BA. length=641;0 /// Q63256 // Gene-TRE:HSP 70 HEAT SHOCK PROTEIN 70. length=641;0 /// Q9QWU1 // HSC70T (FRAGMENT). length=552;0 /// HS71_MOUSE // SW:Q61689 Gene:HSPA1 Gene:HSP70A1 Gene:HSP70-1 Gene:HCP70.1 HEAT SHOCK 70 KDA PROTEIN 1 (HSP70.1) (HSP70-1/HSP70-2). length=641;0 /// Q9BIR7 // HEAT SHOCK PROTEIN HSP70BC. length=641;0 /// Q925V6 // HSP70. length=642;0 /// O42359 // Gene-TRE:HSP70 HEAT SHOCK COGNATE 70 KDA PROTEIN (FRAGMENT). length=214;2e-98 /// HS68_DROME // Gene:HSP68 Gene:CG5436 HEAT SHOCK PROTEIN 68. length=635;0 /// HS70_DROME // Gene:HSP70AA Gene:HSP70A Gene:CG18743 Major heat shock 70 kDa protein Aa (Heat shock protein 70Aa) (HSP70- 87A7). length=642;0 /// Q9BIS2 // HEAT SHOCK PROTEIN HSP70BB. length=641;0 /// HS73_RAT // Gene:HSP70-3 HEAT SHOCK 70 KDA PROTEIN 3 (HSP70.3). length=641;0 /// HS7H_HUMAN // SW:Q9UQM1 SW:O75634 SW:Q96QC9 Gene:HSPA1L Heat shock 70 kDa protein 1-HOM (HSP70-HOM). length=641;0 /// Q61698 // Gene-TRE:HSP70-1 HEAT SHOCK PROTEIN (HSP68) (FRAGMENT). length=228;3e-91 /// HS72_YEAST // Gene:SSA2 Gene:YLL024C Gene:L0931 HEAT SHOCK PROTEIN SSA2. length=638;0 /// HS71_DROME // Gene:HSP70AB Gene:HSP70A MAJOR HEAT SHOCK 70 KDA PROTEIN AB (HEAT SHOCK PROTEIN 70AB) (HSP70- 87A7). length=643;0 /// O88687 // Gene-TRE:HSP70-3 Gene-TRE:HSP70.3 HEAT SHOCK PROTEIN 70 (FRAGMENT). length=43;2e-13 /// Q96H53 // SIMILAR TO HEAT SHOCK 70KD PROTEIN 8 (FRAGMENT). length=222;2e-83 /// Q9NZ87 // UNCHARACTERIZED BONE MARROW PROTEIN BM034. length=129;3e-34 /// Q9BIS4 // HEAT SHOCK PROTEIN HSP70BA. length=641;0 /// HS77_HUMAN // SW:P19790 Gene:HSPA7 Gene:HSP70B Heat shock 70 kDa protein 7 (Heat shock 70 kDa protein B) (Fragment). length=247;1e-130 /// HS71_RAT // SW:P42853 Gene:HSP70-1 Gene:HSP70-2 HEAT SHOCK 70 KDA PROTEIN 1/2 (HSP70.1/2). length=641;0 /// Q9QWJ5 // Gene-TRE:H2-BF HSP70. length=641;0 /// Q96QC9 // Gene-TRE:HSPA1L HEAT SHOCK PROTEIN. length=641;0 /// Q9NWW3 // CDNA FLJ20564 FIS, CLONE KAT12033. length=129;2e-33 /// Q9BIR8 // HEAT SHOCK PROTEIN HSP70BC. length=641;0 /// Q91ZU4 // Gene-TRE:HSC70T HEAT SHOCK PROTEIN HSC70T (FRAGMENT). length=461;0 /// Q05834 // Gene-TRE:SSB1 Gene-TRE:YDL229W SSB1 PROTEIN (FRAGMENT). length=224;4e-74 /// O75634 // Gene-TRE:HSPA1L HEAT SHOCK PROTEIN 70 TESTIS VARIANT. length=641;0 /// O42360 // Gene-TRE:HSP70 HEAT SHOCK COGNATE 70 KDA PROTEIN (FRAGMENT). length=214;1e-102 /// Q42010 // HEAT SHOCK PROTEIN COGNATE 70 (FRAGMENT). length=68;5e-23 /// Q9QZ38 // HEAT SHOCK COGNATE HSC73 (FRAGMENT). length=58;3e-22 /// O88688 // Gene-TRE:HSP70-3 Gene-TRE:HSP70.3 HEAT SHOCK PROTEIN 70 (FRAGMENT). length=143;1e-47 /// Q05829 // Gene-TRE:SSA1 Gene-TRE:YG100 Gene-TRE:YAL005C HEAT SHOCK PROTEIN YG100 (FRAGMENT). length=339;1e-145 /// Q9S9N1 // Gene-TRE:T24D18.14 T24D18.14 PROTEIN. length=646;0 /// Q9UQC1 // Gene-TRE:HSP70-1 HEAT SHOCK PROTEIN 72 (FRAGMENT). length=151;1e-70 /// Q96BE0 // HYPOTHETICAL 29.4 KDA PROTEIN (FRAGMENT). length=269;1e-107 /// Q91ZU5 // Gene-TRE:HSC70T HEAT SHOCK PROTEIN HSC70T (FRAGMENT). length=282;1e-119 /// HS7T_MOUSE // SW:Q61693 Gene:HSPA1L Gene:HSC70T Heat shock 70 kDa-like protein 1. length=641;0 /// Q9UQM1 // HSP70-HOM. length=641;0" --- chr1q23.3 // 157228159-157228604 // + // 100 Hs.3268 // 4 // NM_002155 // heat shock 70kDa protein 6 (HSP70B') // chr1 // 157226709-157228641 // + 121_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank X69699 X69699 /FEATURE= /DEFINITION=HSPAX8A H.sapiens Pax8 mRNA X69699 X69699 --- paired box gene 8 PAX8 Chr:2q12-q14 Hs.73149 7849 Q06710 /// Q96J49 --- 167415 ENSG00000125618 --- NM_003466 // paired box gene 8 isoform PAX8A /// NM_013951 // paired box gene 8 isoform PAX8B /// NM_013952 // paired box gene 8 isoform PAX8C /// NM_013953 // paired box gene 8 isoform PAX8D /// NM_013992 // paired box gene 8 isoform PAX8E 7397 // histogenesis and organogenesis // predicted/computed /// 7275 // development // extended:inferred from sequence similarity; PAX; 1.6e-87 /// 7345 // embryogenesis and morphogenesis // predicted/computed --- 4996 // thyroid-stimulating hormone receptor // experimental evidence /// 3700 // transcription factor // predicted/computed DNA-binding protein // not recorded Differentiation // not recorded DNA-associated (direct or indirect) // not recorded Cell fate specification // not recorded /// Embryonic development // not recorded --- --- --- "IPR001523 // Paired box protein, N-terminal" PAX // 'Paired box' domain;1.6e-87 IPB001523 // 'Paired box' domain;1.3e-121 /// IPB001523 // 'Paired box' domain;1.9e-119 /// IPB001523 // 'Paired box' domain;7.7e-122 /// IPB001523 // 'Paired box' domain;8.6e-120 /// IPB001523 // 'Paired box' domain;7.9e-118 d1k78a1 // a.4.1.5 // Pax-5 ;1.77e-25 --- --- "7524365 // paired box gene 8, isoform PAX8D; paired domain gene 8 [Homo sapiens];0.0 /// 7524361 // paired box gene 8, isoform PAX8B; paired domain gene 8 [Homo sapiens];0.0 /// 7669542 // paired box gene 8, isoform PAX8E; paired domain gene 8 [Homo sapiens];e-162 /// 1082940 // paired box transcription factor Pax-8, splice form g - dog;0.0 /// 7524365 // paired box gene 8, isoform PAX8D; paired domain gene 8 [Homo sapiens];e-163 /// 7524363 // paired box gene 8, isoform PAX8C; paired domain gene 8 [Homo sapiens];0.0 /// 7669542 // paired box gene 8, isoform PAX8E; paired domain gene 8 [Homo sapiens];e-168 /// 5803117 // paired box gene 8, isoform PAX8A; paired domain gene 8 [Homo sapiens];0.0" "PAX8_RAT // Gene:PAX8 Gene:PAX-8 Paired box protein Pax-8. length=458;0 /// Q8VDB4 // Gene-TRE:PAX-6 PAIRED BOX PROTEIN. length=118;7e-38 /// PAX8_HUMAN // SW:Q09155 SW:Q16337 SW:Q16338 SW:Q16339 Gene:PAX8 Paired box protein Pax-8. length=450;0 /// Q96J49 // PAIRED BOX GENE 8. length=450;0 /// Q8VBY9 // Gene-TRE:PAX-6 PAIRED BOX PROTEIN. length=102;3e-30 /// O93372 // Gene-TRE:PAX8 TRANSCRIPTION FACTOR (FRAGMENT). length=429;1e-153 /// Q99573 // Gene-TRE:PAX-8 PAX-8 PROTEIN (FRAGMENT). length=60;2e-24 /// PAX8_MOUSE // SW:P97342 Gene:PAX8 Gene:PAX-8 Paired box protein Pax-8. length=457;0 /// PX8D_HUMAN // SW:Q16337 Gene:PAX8 PAIRED BOX PROTEIN PAX-8, ISOFORMS 8C/8D. length=399;1e-176" 1387730_at RAE230A // 90.21% Pax-8 protein Putative Ortholog /// X94246_at RG-U34A // 90.21% Pax-8 protein Putative Ortholog /// 1418208_at MOE430A // paired box gene 8 Curated Ortholog /// 96504_at MG-U74Av2 // paired box gene 8 Curated Ortholog chr2q13 // 111895698-111896221 // - // 99 Hs.73149 // 2 // X69699 // paired box gene 8 // chr2 // 111895698-111957247 // - 1255_g_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank L36861 "L36861 /FEATURE=expanded_cds /DEFINITION=HUMGCAPB Homo sapiens guanylate cyclase activating protein (GCAP) gene exons 1-4, complete cds" L36861expanded_cds L36861expanded_cds 2010548 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Q9NU14 // Gene-TRE:GUCA1A DJ139D8.2 (GUANYLATE CYCLASE ACTIVATOR 1A (RETINA)). length=201;1e-112 /// GCA1_MOUSE // Gene:GUCA1A Gene:GUCA1 Gene:GCAP1 Gene:GCAP GUANYLYL CYCLASE ACTIVATING PROTEIN 1 (GCAP 1) (GUANYLATE CYCLASE ACTIVATOR 1A). length=201;1e-101 /// GCA1_HUMAN // SW:Q9NU14 Gene:GUCA1A Gene:GUCA1 Gene:GCAP1 Gene:GCAP Guanylyl cyclase activating protein 1 (GCAP 1) (Guanylate cyclase activator 1A). length=200;1e-113 --- --- --- 1294_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank L13852 "L13852 /FEATURE= /DEFINITION=HUME1URP Homo sapiens ubiquitin-activating enzyme E1 related protein mRNA, complete cds" L13852 L13852 --- ubiquitin-activating enzyme E1-like UBE1L Chr:3p21 Hs.16695 7318 P41226 /// Q9BRB2 --- 191325 --- --- NM_003335 // ubiquitin-activating enzyme E1-like 6464 // protein modification // not recorded --- 3824 // enzyme // extended:inferred from electronic annotation; ThiF; 3.4e-48 /// 4840 // ubiquitin conjugating enzyme // not recorded /// 8047 // enzyme activator // not recorded Protein conjugation factor // not recorded /// Activator // not recorded Protein degradation // not recorded --- --- --- Proteasome_Degradation --- IPR000011 // Ubiquitin-activating enzyme /// IPR000594 // UBA/THIF-type NAD/FAD binding fold /// IPR000127 // Ubiquitin-activating enzyme replicated domain UBACT // Repeat in ubiquitin-activating (UBA) protein;4.2e-39 /// ThiF // ThiF family;9e-110 IPB000011 // Ubiquitin-activating enzyme;2.2e-72 --- --- --- "4507767 // ubiquitin-activating enzyme E1-like; Ubiquitin-activating enzyme-2; ubiquitin-activating enzyme E1, like [Homo sapiens];0.0 /// 477152 // ubiquitin--protein ligase E1 homolog - human;0.0" UBAL_HUMAN // Gene:UBE1L Gene:UBE2 Ubiquitin-activating enzyme E1 homolog (D8). length=1011;0 /// Q9ET03 // Gene-TRE:UBE1L UBE1L (FRAGMENT). length=775;0 /// Q9ET02 // UBE1L (FRAGMENT). length=770;0 /// Q9DBK7 // Gene-TRE:1300004C08RIK 1300004C08RIK PROTEIN. length=977;0 /// Q9BRB2 // UBIQUITIN-ACTIVATING ENZYME E1. length=1012;0 --- --- --- 1316_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank X55005 "X55005 /FEATURE=mRNA /DEFINITION=HSCERBAR Homo sapiens mRNA for thyroid hormone receptor alpha 1 THRA1, (c-erbA-1 gene)" X55005mRNA X55005mRNA --- "thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)" THRA Chr:17q11.2 Hs.724 7067 P10827 --- 190120 ENSG00000126351 --- "NM_003250 // thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)" "6366 // transcription from Pol II promoter // experimental evidence /// 6351 // transcription, DNA-dependent // experimental evidence" 5634 // nucleus // not recorded 3700 // transcription factor // experimental evidence /// 4887 // thyroid hormone receptor // experimental evidence DNA-binding protein // predicted/computed /// Receptor (signalling) // predicted/computed /// Activator // predicted/computed Pol II transcription // predicted/computed DNA-associated (direct or indirect) // predicted/computed --- Nuclear // experimental evidence --- --- "IPR001628 // Zn-finger, C4-type steroid receptor /// IPR001728 // Thyroid hormone receptor /// IPR001723 // Steroid hormone receptor /// IPR000536 // Ligand-binding domain of nuclear hormone receptor" "zf-C4 // Zinc finger, C4 type (two domains);2.5e-50 /// hormone_rec // Ligand-binding domain of nuclear hormone;6.9e-25" IPB002360 // Involucrin;0.0062 "d1ilga_ // a.123.1.1 // Pregnane x receptor, PXR ;4.15e-79" --- --- "6018474 // thyroid hormone receptor alpha 2 [Homo sapiens];0.0 /// 20127452 // thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian); Thyroid hormone receptor, alpha (oncogene ERBA1); thyroid hormone receptor, alpha (avian erythroblastic leukemia viral (v-erb-a) oncogene homolog) [Homo sapiens];0.0" THA1_HUMAN // Gene:THRA Gene:NR1A1 Gene:THRA1 Gene:ERBA1 THYROID HORMONE RECEPTOR ALPHA-1 (C-ERBA-ALPHA-1) (EAR-7-1) (EAR7). length=410;0 /// O42535 // Gene-TRE:COUPTF5 COUP-TF (FRAGMENT). length=46;3e-12 /// O42560 // Gene-TRE:TRB TRB (FRAGMENT). length=42;2e-15 /// Q90Y31 // Gene-TRE:TR-BETA THYROID HORMONE RECEPTOR BETA (FRAGMENT). length=278;1e-123 /// O42559 // TRA (FRAGMENT). length=41;5e-19 /// THA1_MOUSE // SW:P10685 SW:Q63107 Gene:THRA Gene:NR1A1 Gene:C-ERBA-ALPHA THYROID HORMONE RECEPTOR ALPHA-1. length=410;0 /// Q96H73 // THYROID HORMONE RECEPTOR. length=410;0 X12744_at RG-U34A // 87.71% thyroid hormone receptor alpha Putative Ortholog /// 1375535_at RAE230A // 87.71% ESTs Putative Ortholog /// 1367726_at RAE230A // 87.71% thyroid hormone receptor alpha Putative Ortholog /// X12744_at RN-U34 // 87.71% thyroid hormone receptor alpha Putative Ortholog /// M31174_at RN-U34 // 87.71% thyroid hormone receptor alpha Putative Ortholog /// M31174_at RT-U34 // 87.71% thyroid hormone receptor alpha Putative Ortholog /// 1370691_a_at RAE230A // 87.71% thyroid hormone receptor alpha Putative Ortholog /// M31174_g_at RN-U34 // 87.71% thyroid hormone receptor alpha Putative Ortholog /// M31174_g_at RT-U34 // 87.71% thyroid hormone receptor alpha Putative Ortholog /// rc_AA899287_at RG-U34B // 87.71% ESTs Putative Ortholog /// M31174_at RG-U34A // 87.71% thyroid hormone receptor alpha Putative Ortholog /// M31174_g_at RG-U34A // 87.71% thyroid hormone receptor alpha Putative Ortholog /// rc_AI103917_at RG-U34C // 87.71% ESTs Putative Ortholog /// Msa.42117.0_s_at Mu11KsubB // thyroid hormone receptor alpha Curated Ortholog /// 99077_at MG-U74Av2 // thyroid hormone receptor alpha Curated Ortholog /// 99076_at MG-U74Av2 // thyroid hormone receptor alpha Curated Ortholog /// x51983_s_at Mu11KsubB // thyroid hormone receptor alpha Curated Ortholog /// 1454675_at MOE430A // thyroid hormone receptor alpha Curated Ortholog /// 1416958_at MOE430A // thyroid hormone receptor alpha Curated Ortholog /// Msa.7694.0_s_at Mu11KsubB // thyroid hormone receptor alpha Curated Ortholog /// 92348_at MG-U74Av2 // thyroid hormone receptor alpha Curated Ortholog /// 107103_at MG-U74Bv2 // thyroid hormone receptor alpha Curated Ortholog /// 1416959_at MOE430A // thyroid hormone receptor alpha Curated Ortholog /// u12142_s_at Mu11KsubA // thyroid hormone receptor alpha Curated Ortholog /// X07751_s_at Mu11KsubB // thyroid hormone receptor alpha Curated Ortholog chr17q21.1 // 40312921-40313233 // - // 99 "Hs.724 // 1 // X55005 // thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) // chr17 // 40312878-40373444 // -" 1320_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank X79510 X79510 /FEATURE=cds /DEFINITION=HSPTPD1 H.sapiens mRNA for protein-tyrosine-phosphatase D1 X79510cds X79510cds --- "protein tyrosine phosphatase, non-receptor type 21" PTPN21 Chr:14q31.3 Hs.155693 11099 Q16825 EC:3.1.3.48 603271 ENSG00000070778 --- "NM_007039 // protein tyrosine phosphatase, non-receptor type 21" 6470 // protein amino acid dephosphorylation // predicted/computed 157 // peripheral plasma membrane protein // predicted/computed /// 5856 // cytoskeleton // predicted/computed 4725 // protein tyrosine phosphatase // predicted/computed Hydrolase // predicted/computed --- Peripheral membrane // predicted/computed --- Cytoskeletal // predicted/computed --- --- IPR000387 // Tyrosine specific protein phosphatase and dual specificity protein phosphatase /// IPR000242 // Tyrosine specific protein phosphatase /// IPR000299 // Band 4.1 domain Band_41 // FERM domain (Band 4.1 family);1.3e-30 /// Y_phosphatase // Protein-tyrosine phosphatase;2e-104 IPB000387 // Tyrosine specific protein phosphatase and dual specificity protein phosphatase family;2.9e-06 d1gg3a3 // d.15.1.4 // Erythroid membrane protein 4.1R ;1.71e-24 /// d1gg3a2 // b.55.1.5 // Erythroid membrane protein 4.1R ;4.42e-08 /// d1fpra_ // c.45.1.2 // Tyrosine phosphatase ;1.22e-83 /// d1h4ra1 // a.11.2.1 // Merlin ;1.94e-19 --- --- "5902032 // protein tyrosine phosphatase, non-receptor type 21; protein tyrosine phosphatase D1 [Homo sapiens];0.0 /// 6755240 // protein tyrosine phosphatase, non-receptor type 21 [Mus musculus];0.0" "Q9D6E5 // Gene-TRE:PTPN21 PROTEIN TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 21. length=117;2e-60 /// PTNL_HUMAN // Gene:PTPN21 Gene:PTPD1 PROTEIN TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 21 (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE D1). length=1174;0 /// PTNL_RAT // SW:Q62732 Gene:PTPN21 Gene:PTP2E PROTEIN TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 21 (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE 2E). length=1175;0 /// PTNE_MOUSE // Gene:PTPN14 PROTEIN TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 14 (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE PTP36). length=1189;0 /// Q8WX29 // Gene-TRE:PTPN21 DJ1175B15.2 (PROTEIN TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 21) (FRAGMENT). length=1024;0 /// PTNL_MOUSE // Gene:PTPN21 PROTEIN TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 21 (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE PTP-RL10). length=1176;0 /// PTNE_HUMAN // Gene:PTPN14 Gene:PEZ PROTEIN TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 14 (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE PEZ). length=1187;0 /// Q9QWQ7 // PTP-RL10B. length=336;0" "rc_AA946488_s_at RG-U34A // 81.76% protein tyrosine phosphatase 2E Putative Ortholog /// 1368087_a_at RAE230A // 81.76% protein tyrosine phosphatase 2E Putative Ortholog /// U17971_at RG-U34A // 81.76% protein tyrosine phosphatase 2E Putative Ortholog /// 99970_at MG-U74Av2 // protein tyrosine phosphatase, non-receptor type 21 Curated Ortholog /// Msa.6892.0_s_at Mu11KsubB // protein tyrosine phosphatase, non-receptor type 21 Curated Ortholog /// 1419055_a_at MOE430A // protein tyrosine phosphatase, non-receptor type 21 Curated Ortholog /// 1419054_a_at MOE430A // protein tyrosine phosphatase, non-receptor type 21 Curated Ortholog /// d37801_s_at Mu11KsubA // protein tyrosine phosphatase, non-receptor type 21 Curated Ortholog /// 1453298_at MOE430A // protein tyrosine phosphatase, non-receptor type 21 Curated Ortholog" chr14q31.3 // 82751392-82752909 // - // 99 "Hs.155693 // 2 // NM_007039 // protein tyrosine phosphatase, non-receptor type 21 // chr14 // 82750994-82838004 // -" 1405_i_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank M21121 "M21121 /FEATURE= /DEFINITION=HUMTCSM Human T cell-specific protein (RANTES) mRNA, complete cds" M21121 M21121 --- chemokine (C-C motif) ligand 5 CCL5 Chr:17q11.2-q12 Hs.241392 6352 P13501 --- 187011 ENSG00000161570 --- NM_002985 // small inducible cytokine A5 precursor 7165 // signal transduction // experimental evidence /// 6887 // exocytosis // experimental evidence /// 7155 // cell adhesion // experimental evidence /// 6955 // immune response // experimental evidence /// 6979 // response to oxidative stress // experimental evidence /// 7267 // cell-cell signaling // experimental evidence /// 9615 // response to viruses // experimental evidence /// 6968 // cellular defense response // experimental evidence /// 6954 // inflammatory response // experimental evidence /// 6935 // chemotaxis // experimental evidence /// 6874 // calcium ion homeostasis // experimental evidence /// 6928 // cell motility // experimental evidence --- 8009 // chemokine // experimental evidence /// 5102 // receptor binding // experimental evidence /// 3800 // antiviral response protein // predicted/computed /// 4871 // signal transducer // experimental evidence --- --- Soluble // experimental evidence Cell-to-cell signalling // experimental evidence /// Pathogenic Invasion // experimental evidence /// Anti-pathogen response // experimental evidence /// Cell migration/motility // experimental evidence /// Response to injury // predicted/computed --- --- --- "IPR001811 // Small chemokine, interleukin-8 like /// IPR000827 // Small chemokine, C-C subfamily" "IL8 // Small cytokines (intecrine/chemokine), inter;2e-27" IPB001089 // Small cytokine;0.0026 "d1b3aa_ // d.9.1.1 // RANTES (regulated upon activation, normal T-cell expressed and secreted) ;2.14e-21" numtm:1;Nin-prob:0.52164;type:signal; --- "339421 // T cell-specific protein precursor;6e-47 /// 22538814 // small inducible cytokine A5 precursor; T-cell specific protein p288; T-cell specific RANTES protein; SIS-delta; regulated upon activation, normally T-expressed, and presumably secreted; beta-chemokine RANTES precursor; small inducible cytokine subfamily A (Cys-Cys), member 5 [Homo sapiens];1e-47" SY04_MOUSE // Gene:CCL4 Gene:SCYA4 Gene:MIP1B Small inducible cytokine A4 precursor (CCL4) (Macrophage inflammatory protein 1-beta) (MIP-1-beta) (H400 protein) (SIS-gamma) (ACT2). length=92;5e-21 /// SY03_RAT // Gene:CCL3 Gene:SCYA3 Gene:MIP1A Small inducible cytokine A3 precursor (CCL3) (Macrophage inflammatory protein 1-alpha) (MIP-1-alpha). length=92;1e-21 /// SY03_HUMAN // Gene:SCYA3 Gene:G0S19-1 Gene:MIP1A Small inducible cytokine A3 precursor (CCL3) (Macrophage inflammatory protein 1-alpha) (MIP-1-alpha) (Tonsillar lymphocyte LD78 alpha protein) (G0/G1 switch regulatory protein 19-1) (G0S19-1 protein) (SIS-beta) (PAT 464.1). length=92;3e-21 /// SY3L_HUMAN // Gene:SCYA3L1 Gene:G0S19-2 Small inducible cytokine A3 like 1 precursor (Tonsillar lymphocyte LD78 beta protein) (G0/G1 switch regulatory protein 19-2) (G0S19-2 protein) (PAT 464.2). length=93;1e-21 /// SY05_RAT // Gene:CCL5 Gene:SCYA5 Small inducible cytokine A5 precursor (CCL5) (T-cell specific RANTES protein) (SIS-delta). length=92;2e-37 /// SY05_MOUSE // Gene:CCL5 Gene:SCYA5 Small inducible cytokine A5 precursor (CCL5) (T-cell specific RANTES protein) (SIS-delta) (MuRantes). length=91;3e-38 /// Q8WUD5 // SIMILAR TO HYPOTHETICAL PROTEIN FLJ21394. length=54;1e-13 /// SY05_HUMAN // SW:O43646 SW:Q9NYA2 Gene:SCYA5 Small inducible cytokine A5 precursor (CCL5) (T-cell specific RANTES protein) (SIS-delta) (T cell-specific protein P228) (TCP228). length=91;3e-47 /// Q96I68 // SIMILAR TO SMALL INDUCIBLE CYTOKINE A3 (HOMOLOGOUS TO MOUSE MIP-1A). length=93;4e-21 /// Q9NYA2 // BETA-CHEMOKINE RANTES PRECURSOR. length=91;2e-47 /// SY04_HUMAN // SW:P22617 SW:Q13704 Gene:SCYA4 Gene:MIP1B Gene:LAG1 Small inducible cytokine A4 precursor (CCL4) (Macrophage inflammatory protein 1-beta) (MIP-1-beta) (T-cell activation protein 2) (ACT-2) (PAT 744) (H400) (SIS-gamma) (Lymphocyte activation gene-1 protein) (LAG-1) (HC21) (G-26 T lymphocyte-secreted protein). length=92;2e-20 /// Q96HL9 // SIMILAR TO HYPOTHETICAL PROTEIN PRO1722. length=66;7e-19 /// Q14745 // LD78 ALPHA BETA PRECURSOR (FRAGMENT). length=80;4e-17 u02298_s_at Mu11KsubA // chemokine (C-C motif) ligand 5 Curated Ortholog /// 98406_at MG-U74Av2 // chemokine (C-C motif) ligand 5 Curated Ortholog /// 1418126_at MOE430A // chemokine (C-C motif) ligand 5 Curated Ortholog chr17q12 // 36234512-36234557 // - // 97 Hs.241392 // 2 // NM_002985 // chemokine (C-C motif) ligand 5 // chr17 // 36234305-36243188 // - 1431_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank J02843 "J02843 /FEATURE=cds /DEFINITION=HUMCYPIIE Human cytochrome P450IIE1 (ethanol-inducible) gene, complete cds" J02843cds J02843cds --- "cytochrome P450, subfamily IIE (ethanol-inducible), polypeptide 1" CYP2E1 Chr:10q24.3-qter Hs.75183 1571 P05181 /// Q16868 EC:1.14.14.1 --- ENSG00000130649 --- "NM_000773 // cytochrome P450, family 2, subfamily E, polypeptide 1" 6118 // electron transport // extended:Unknown; p450; 1e-205 --- 4497 // monooxygenase // experimental evidence /// 15034 // cytochrome P450 // experimental evidence Oxidoreductase // experimental evidence Other metabolism // not recorded --- --- --- --- MAP00071 // Fatty acid metabolism /// MAP00361 // gamma-Hexachlorocyclohexane degradation /// MAP00380 // Tryptophan metabolism "IPR001128 // Cytochrome P450 /// IPR002401 // E-class P450, group I" p450 // Cytochrome P450;1e-205 IPB001128 // none;0.0077 d1dt6a_ // a.104.1.1 // Mammalian cytochrome p450 2c5 ;5.61e-136 numtm:1;Nin-prob:0.85378;type:signal; EC:4.2.1.92 // CP74_LINUS ALLENE OXIDE SYNTHASE PRECURSOR (EC 4.2.1.92) (HYDROPEROXIDE DEHYDRASE) (CYTOCHROME P450 74A).;8.81e-110 /// EC:1.14.13.11 // TCMO_ZINEL TRANS-CINNAMATE 4-MONOOXYGENASE (EC 1.14.13.11) (CINNAMIC ACID 4-HYDROXYLASE) (CA4H) (C4H) (P450C4H) (CYTOCHROME P450 73).;5.72e-142 /// EC:5.3.99.5 // THAS_HUMAN THROMBOXANE-A SYNTHASE (EC 5.3.99.5) (TXA SYNTHASE) (TXS).;1.88e-138 /// EC:1.14.99.10 // CPS1_HUMAN CYTOCHROME P450 XXIB (EC 1.14.99.10) (STEROID 21-HYDROXYLASE) (P450-C21B).;2.03e-135 /// EC:1.14.15.4 // CPN2_HUMAN CYTOCHROME P450 11B2 PRECURSOR (EC 1.14.15.4) (CYPXIB2) (P-450ALDO) (ALDOSTERONE SYNTHASE) (ALDOS) (ALDOSTERONE-SYNTHESIZING ENZYME) (STEROID 18-HYDROXYLASE) (P-450C18).;2.07e-138 /// EC:1.1.3.34 // CP80_BERST BERBAMUNINE SYNTHASE (EC 1.1.3.34) (CYTOCHROME P450 80) (CYPLXXX) ((S)-N-METHYLCOCLAURINE OXIDASE [C-O PHENOL-COUPLING]).;8.39e-136 /// P450:Q05421 // CYP2E-1 Cyt P450: Animalia.CYP2E-1.mou;0 "10834998 // cytochrome P450, subfamily IIE, polypeptide 1; microsomal monooxygenase; xenobiotic monooxygenase; flavoprotein-linked monooxygenase; cytochrome P450, subfamily IIE (ethanol-inducible) [Homo sapiens];0.0 /// 6470141 // cytochrome P450-2E1 [Homo sapiens];0.0" "Q64614 // CYTOCHROME P450PB-1 (FRAGMENT). length=169;5e-61 /// Q63126 // RAT CYTOCHROME P-450B TYPE B (FRAGMENT). length=48;2e-12 /// CPC6_RAT // Gene:CYP2C6 Gene:CYP2C-6 Cytochrome P450 2C6 (EC 1.14.14.1) (CYPIIC6) (P450 PB1) (PTF2). length=490;1e-164 /// CPE1_RAT // Gene:CYP2E Gene:CYP2E1 Gene:CYP2E-1 Cytochrome P450 2E1 (EC 1.14.14.1) (CYPIIE1) (P450-J) (P450RLM6). length=493;0 /// CPCT_MOUSE // Gene:CYP2C29 Cytochrome P450 2C29 (EC 1.14.14.1) (CYPIIC29) (P-450 MUT-2) (Aldehyde oxygenase). length=490;1e-165 /// Q9CVC8 // Gene-TRE:2210009K14RIK 2210009K14RIK PROTEIN (FRAGMENT). length=474;1e-166 /// Q9Z198 // MRNA FRAGMENT FOR REPETITIVE ELEMENT B2. length=39;4e-12 /// Q9UQ59 // Gene-TRE:CYP2C9 CYTOCHROME P-450 2C (FRAGMENT). length=169;2e-57 /// Q63125 // RAT CYTOCHROME P-450B TYPE B (FRAGMENT). length=48;2e-11 /// Q16872 // CYTOCHROME P-450. length=477;1e-168 /// Q9UCZ9 // CYTOCHROME P450 ARACHIDONIC ACID EPOXYGENASE ISOFORM, CYP 2C8. length=485;1e-164 /// Q16743 // Gene-TRE:CYP 2C CYTOCHROME P-450 II C (FRAGMENT). length=356;1e-128 /// CPE1_HUMAN // SW:Q9UK47 Gene:CYP2E1 Cytochrome P450 2E1 (EC 1.14.14.1) (CYPIIE1) (P450-J). length=493;0 /// Q91WN9 // SIMILAR TO CYTOCHROME P450, 2C29. length=490;1e-165 /// Q03738 // RAT CYTOCHROME P-450B TYPE E (FRAGMENT). length=48;8e-12 /// Q8WZB1 // Gene-TRE:CYP2C19 S-MEPHENYTOIN 4-HYDROXYLASE (FRAGMENT). length=217;1e-75 /// Q8WUN8 // HYPOTHETICAL 55.7 KDA PROTEIN. length=490;1e-165 /// CPCN_RAT // SW:Q64534 SW:Q63914 Gene:CYP2C23 Gene:CYP2C-23 Cytochrome P450 2C23 (EC 1.14.14.1) (CYPIIC23) (Arachidonic acid epoxygenase). length=494;1e-164 /// CPE1_MOUSE // Gene:CYP2E Gene:CYP2E1 Gene:CYP2E-1 Cytochrome P450 2E1 (EC 1.14.14.1) (CYPIIE1) (P450-J) (P450-ALC). length=493;0 /// Q16756 // CYTOCHROME P-450 (FRAGMENT). length=487;1e-169 /// Q9UK47 // Gene-TRE:CYP2E1 CYTOCHROME P450-2E1 (EC 1.14.14.1). length=493;0 /// Q16868 // Gene-TRE:CYP2E1 CYP2E1 PROTEIN (FRAGMENT). length=68;1e-33" "1367871_at RAE230A // 80.29% cytochrome P450, subfamily 2E, polypeptide 1 Putative Ortholog /// m30844_s_at Mu11KsubA // cytochrome P450, 2e1, ethanol inducible Curated Ortholog /// 93996_at MG-U74Av2 // cytochrome P450, 2e1, ethanol inducible Curated Ortholog /// Msa.27233.0_s_at Mu11KsubB // cytochrome P450, 2e1, ethanol inducible Curated Ortholog /// 1415994_at MOE430A // cytochrome P450, 2e1, ethanol inducible Curated Ortholog /// Msa.29934.0_s_at Mu11KsubB // cytochrome P450, 2e1, ethanol inducible Curated Ortholog /// 134363_at MG-U74Cv2 // cytochrome P450, 2e1, ethanol inducible Curated Ortholog" chr10q26.3 // 134477367-134482364 // + // 99 "Hs.75183 // 4 // NM_000773 // cytochrome P450, subfamily IIE (ethanol-inducible), polypeptide 1 // chr10 // 134470871-134482625 // +" 1438_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank X75208 X75208 /FEATURE=cds /DEFINITION=HSPTKR H.sapiens HEK2 mRNA for protein tyrosine kinase receptor X75208cds X75208cds --- EphB3 EPHB3 Chr:3q21-qter Hs.2913 2049 P54753 EC:2.7.1.112 601839 ENSG00000171690 --- NM_004443 // ephrin receptor EphB3 precursor 7165 // signal transduction // predicted/computed 5887 // integral to plasma membrane // predicted/computed 5003 // ephrin receptor // extended:inferred from electronic annotation; EPH_lbd; 1.1e-135 /// 4714 // transmembrane receptor protein tyrosine kinase // predicted/computed Receptor (signalling) // not recorded --- Integral membrane // not recorded --- --- --- --- "IPR001245 // Tyrosine protein kinase /// IPR001090 // Ephrin receptor, Eph /// IPR001660 // Sterile alpha motif SAM /// IPR003961 // Fibronectin, type III /// IPR001426 // Receptor tyrosine kinase, class V /// IPR003962 // Fibronectin, type III repeat /// IPR000345 // Cytochrome c heme-binding site /// IPR000719 // Eukaryotic protein kinase" SAM // SAM domain (Sterile alpha motif);8.4e-29 /// pkinase // Protein kinase domain;5e-75 /// fn3 // Fibronectin type III domain;2.8e-38 /// EPH_lbd // Ephrin receptor ligand binding domain;1.1e-135 IPB001060 // Cell division control protein 15 (CDC15);0.0072 d1nuka_ // b.18.1.4 // Ligand-binding domain of the ephb2 receptor tyrosine kinase ;2.11e-78 /// d1jpaa_ // d.144.1.2 // ephb2 receptor tyrosine kinase ;3.28e-75 /// d1b4fa_ // a.60.1.2 // EphB2 receptor ;6.81e-26 numtm:1;Nin-prob:0.02441;type:tm; EC:4.6.1.2 // HSER_HUMAN HEAT-STABLE ENTEROTOXIN RECEPTOR PRECURSOR (GC-C) (INTESTINAL GUANYLATE CYCLASE) (EC 4.6.1.2) (STA RECEPTOR).;1.05e-142 /// EC:2.7.1.112 // ZA70_HUMAN TYROSINE-PROTEIN KINASE ZAP-70 (EC 2.7.1.112) (70 KDA ZETA-ASSOCIATED PROTEIN) (SYK-RELATED TYROSINE KINASE).;4.39e-109 /// Hanks:HEK2 // S37627 (HEK2) KINASES:5.2.10 | PTK Group B membrane spanning protein tyrosine kinases.PTK XI Eph/Elk/Eck orphan receptor family .HEK2;1e-157 17975768 // ephrin receptor EphB3 precursor; human embryo kinase 2; EPH-like tyrosine kinase 2; tyrosine-protein kinase receptor HEK-2 [Homo sapiens];0.0 /// 1708164 // Ephrin type-B receptor 3 precursor (Tyrosine-protein kinase receptor HEK-2);0.0 Q91YM0 // HYPOTHETICAL 108.9 KDA PROTEIN. length=987;0 /// Q61821 // Gene-TRE:ELS1 ECK-LIKE SEQUENCE 1 (TYROSINE-PROTEIN KINASE RECEPTOR ELS1) (EC 2.7.1.112) (MRTK5) (FRAGMENT). length=57;1e-19 /// EPA4_BRARE // Gene:EK2 Gene:ZEK2 Ephrin type-A receptor 4 (EC 2.7.1.112) (Tyrosine-protein kinase receptor ZEK2) (EPH-like kinase 2) (Fragment). length=292;1e-127 /// Q62128 // Gene-TRE:EPHB2 Gene-TRE:PTK PROTEIN-TYROSINE KINASE (FRAGMENT). length=74;3e-30 /// O73877 // Gene-TRE:RTK7 EPH-LIKE RECEPTOR TYROSINE KINASE RTK7 (FRAGMENT). length=490;1e-168 /// Q60669 // Gene-TRE:EPHB3 PROTEIN KINASE (FRAGMENT). length=938;0 /// Q9H4H4 // Gene-TRE:EPHB2 DJ74M1.1.1 (TYROSINE KINASE ISOFORM 1) (FRAGMENT). length=552;0 /// Q99MR2 // Gene-TRE:EPHB4 EPHB4. length=987;0 /// EPB4_MOUSE // SW:Q60627 Gene:EPHB4 Gene:MDK2 Gene:MYK1 Gene:HTK EPHRIN TYPE-B RECEPTOR 4 PRECURSOR (EC 2.7.1.112) (TYROSINE-PROTEIN KINASE RECEPTOR MDK-2) (DEVELOPMENTAL KINASE 2) (TYROSINE KINASE MYK- 1). length=987;0 /// EPB3_HUMAN // Gene:EPHB3 Gene:ETK2 Gene:HEK2 EPHRIN TYPE-B RECEPTOR 3 PRECURSOR (EC 2.7.1.112) (TYROSINE-PROTEIN KINASE RECEPTOR HEK-2). length=998;0 /// Q9H4H3 // Gene-TRE:EPHB2 DJ74M1.1.2 (TYROSINE KINASE ISOSFORM 2) (FRAGMENT). length=621;0 /// Q62214 // Gene-TRE:EPHB3 Gene-TRE:SEK-4 EPH RECEPTOR B3 (SEK-4 MRNA) (FRAGMENT). length=275;1e-155 /// O73879 // Gene-TRE:RTK4 EPH-LIKE RECEPTOR TYROSINE KINASE RTK4 (FRAGMENT). length=880;0 93469_at MG-U74Av2 // Eph receptor B3 Curated Ortholog /// u11493_s_at Mu11KsubA // Eph receptor B3 Curated Ortholog /// 1451550_at MOE430A // Eph receptor B3 Curated Ortholog --- --- 1487_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank L38487 "L38487 /FEATURE=mRNA /DEFINITION=HUMHERRA1 Human estrogen receptor-related protein (hERRa1) mRNA, 3' end, partial cds" L38487mRNA L38487mRNA --- estrogen-related receptor alpha ESRRA Chr:11q13 Hs.110849 2101 P11474 /// Q8N4S8 /// Q96F89 /// Q96I02 --- 601998 --- --- NM_004451 // estrogen-related receptor alpha --- 5634 // nucleus // predicted/computed 3677 // DNA binding // predicted/computed /// 3700 // transcription factor // extended:inferred from electronic annotation; zf-C4; 3.1e-51 /// 4879 // ligand-dependent nuclear receptor // predicted/computed DNA-binding protein // experimental evidence Pol II transcription // experimental evidence DNA-associated (direct or indirect) // experimental evidence --- Nuclear // predicted/computed Nuclear_Receptors --- "IPR001628 // Zn-finger, C4-type steroid receptor /// IPR001723 // Steroid hormone receptor /// IPR000003 // Retinoid X receptor /// IPR000536 // Ligand-binding domain of nuclear hormone receptor /// IPR000515 // Binding-protein-dependent transport systems inner membrane component" "zf-C4 // Zinc finger, C4 type (two domains);3.1e-51 /// hormone_rec // Ligand-binding domain of nuclear hormone;4.5e-38" PR00350 // Vitamin D receptor signature;4e-09 d1qkna_ // a.123.1.1 // Estrogen receptor beta ;8.48e-60 --- --- "6166152 // Steroid hormone receptor ERR1 (Estrogen-related receptor, alpha) (ERR-alpha) (Estrogen receptor-like 1);0.0 /// 18860920 // estrogen-related receptor alpha; estrogen receptor-like 1 [Homo sapiens];0.0" "O42537 // Gene-TRE:ERR1 ERR1 (FRAGMENT). length=39;1e-16 /// Q96I02 // UNKNOWN (PROTEIN FOR IMAGE:4301880) (FRAGMENT). length=323;1e-178 /// O42538 // Gene-TRE:ERR2 ERR2 (FRAGMENT). length=39;5e-15 /// Q96F89 // UNKNOWN (PROTEIN FOR IMAGE:3855067) (FRAGMENT). length=55;1e-24 /// ERR1_MOUSE // Gene:ESRRA Gene:NR3B1 Gene:ERR1 Gene:ESTRRA STEROID HORMONE RECEPTOR ERR1 (ESTROGEN-RELATED RECEPTOR, ALPHA) (ERR-ALPHA) (ESTROGEN RECEPTOR-LIKE 1) (FRAGMENT). length=462;0" rc_AA955892_at RG-U34B // 89.22% EST Putative Ortholog chr11q13.1 // 65765174-65765715 // + // 99 Hs.110849 // 5 // NM_004451 // estrogen-related receptor alpha // chr11 // 65754597-65765764 // + 1494_f_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank M33318 "M33318 /FEATURE=mRNA /DEFINITION=HUMCPIIA3A Human cytochrome P450IIA3 (CYP2A3) mRNA, complete cds" M33318mRNA M33318mRNA 2010472 "cytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 6" CYP2A6 Chr:19q13.2 Hs.334345 1548 P11509 EC:1.14.14.1 122720 ENSG00000171563 --- "NM_000762 // cytochrome P450, family 2, subfamily A, polypeptide 6" 6118 // electron transport // extended:Unknown; p450; 1.5e-192 5792 // microsome // experimental evidence 4497 // monooxygenase // experimental evidence /// 15034 // cytochrome P450 // experimental evidence /// 8389 // coumarin 7-hydroxylase // experimental evidence --- Other metabolism // not recorded --- --- Microsomal fraction // experimental evidence --- MAP00071 // Fatty acid metabolism /// MAP00361 // gamma-Hexachlorocyclohexane degradation /// MAP00380 // Tryptophan metabolism "IPR001128 // Cytochrome P450 /// IPR002401 // E-class P450, group I" p450 // Cytochrome P450;1.5e-192 IPB001128 // none;0.00056 d1dt6a_ // a.104.1.1 // Mammalian cytochrome p450 2c5 ;8.34e-134 numtm:1;Nin-prob:0.87542;type:signal; "EC:5.3.99.5 // THAS_HUMAN THROMBOXANE-A SYNTHASE (EC 5.3.99.5) (TXA SYNTHASE) (TXS).;2.28e-135 /// EC:1.1.3.34 // CP80_BERST BERBAMUNINE SYNTHASE (EC 1.1.3.34) (CYTOCHROME P450 80) (CYPLXXX) ((S)-N-METHYLCOCLAURINE OXIDASE [C-O PHENOL-COUPLING]).;1.78e-133 /// EC:4.2.1.92 // CP74_LINUS ALLENE OXIDE SYNTHASE PRECURSOR (EC 4.2.1.92) (HYDROPEROXIDE DEHYDRASE) (CYTOCHROME P450 74A).;3.76e-112 /// EC:1.14.13.11 // TCMO_ZINEL TRANS-CINNAMATE 4-MONOOXYGENASE (EC 1.14.13.11) (CINNAMIC ACID 4-HYDROXYLASE) (CA4H) (C4H) (P450C4H) (CYTOCHROME P450 73).;1.4e-140 /// EC:1.14.99.9 // CPT7_HUMAN CYTOCHROME P450 17 (EC 1.14.99.9) (CYPXVII) (P450-C17) (STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE).;2.33e-138 /// EC:1.14.15.4 // CPN2_HUMAN CYTOCHROME P450 11B2 PRECURSOR (EC 1.14.15.4) (CYPXIB2) (P-450ALDO) (ALDOSTERONE SYNTHASE) (ALDOS) (ALDOSTERONE-SYNTHESIZING ENZYME) (STEROID 18-HYDROXYLASE) (P-450C18).;5.05e-135 /// P450:S32491 // CYP2A-12 Cyt P450: Animalia.CYP2A-12.mou;0" "15147326 // cytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 6; coumarin 7-hydroxylase; cytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 3; xenobiotic monooxygenase; flavoprotein-linked monooxygenase [Homo sapiens];0.0 /// 65684 // coumarin 7-hydroxylase (EC 1.14.14.-) cytochrome P450 2A6 - human;0.0" "Q9WV19 // Gene-TRE:CYP2G1 OLFACTORY-SPECIFIC STEROID HYDROXYLASE. length=494;1e-170 /// CPA6_HUMAN // SW:P10890 SW:P00190 SW:Q16803 SW:Q9UK48 Gene:CYP2A6 Cytochrome P450 2A6 (EC 1.14.14.1) (CYPIIA6) (Coumarin 7-hydroxylase) (IIA3) (CYP2A3) (P450(I)). length=494;0 /// Q13120 // Gene-TRE:CYP2A6V2 CYTOCHROME P450. length=494;0 /// Q62802 // Gene-TRE:CYP2B15 CYTOCHROME P450 2B15 (FRAGMENT). length=104;2e-32 /// Q9H2X2 // CYTOCHROME P450 2A13. length=494;0 /// Q9UK48 // Gene-TRE:CYP2A6 CYTOCHROME P450-2A6 (EC 1.14.14.1). length=494;0 /// CPC9_HUMAN // Gene:CYP2C9 Cytochrome P450 2C9 (EC 1.14.14.1) (CYPIIC9) (P450 PB-1) (P450 MP-4) (S-mephenytoin 4-hydroxylase) (P-450MP). length=490;1e-139 /// Q9WUD0 // CYTOCHROME P450 2B10 RELATED PROTEIN. length=491;1e-155 /// Q9H1Z7 // Gene-TRE:CYP2A6 CYTOCHROME P450 2A6 (FRAGMENT). length=49;7e-20 /// Q9UQ59 // Gene-TRE:CYP2C9 CYTOCHROME P-450 2C (FRAGMENT). length=169;4e-48 /// CPG1_RAT // SW:Q64589 Gene:CYP2G1 Gene:CYP2G-1 Cytochrome P450 2G1 (EC 1.14.14.1) (CYPIIG1) (P450-OLF1) (Olfactive). length=494;1e-170 /// Q03738 // RAT CYTOCHROME P-450B TYPE E (FRAGMENT). length=48;9e-12 /// CPA4_MOUSE // Gene:CYP2A4 Gene:CYP2A-4 Cytochrome P450 2A4 (EC 1.14.14.1) (CYPIIA4) (Testosterone 15-alpha- hydroxylase) (P450-15-alpha) (P450-IIA3.1). length=494;0 /// CPA1_RAT // Gene:CYP2A1 Gene:CYP2A-1 Cytochrome P450 2A1 (EC 1.14.14.1) (CYPIIA1) (Steroid hormones 7- alpha-hydroxylase) (Testosterone 7-alpha-hydroxylase) (P450-UT-F). length=492;0 /// Q16872 // CYTOCHROME P-450. length=477;1e-136 /// Q63126 // RAT CYTOCHROME P-450B TYPE B (FRAGMENT). length=48;1e-11 /// CPB2_RAT // SW:Q64582 Gene:CYP2B2 Gene:CYP2B-2 Cytochrome P450 2B2 (EC 1.14.14.1) (CYPIIB2) (P450E) (P450 PB4). length=491;1e-158 /// Q91X75 // SIMILAR TO CYTOCHROME P450, 2A5. length=494;0 /// CPAC_MOUSE // Gene:CYP2A12 Cytochrome P450 2A12 (EC 1.14.14.1) (CYPIIA12) (Steroid hormones 7- alpha-hydroxylase) (Testosterone 7-alpha-hydroxylase). length=492;0 /// CPAD_HUMAN // SW:Q9H2X2 Gene:CYP2A13 Cytochrome P450 2A13 (EC 1.14.14.1) (CYPIIA13). length=494;0 /// Q64584 // RAT CYTOCHROME P-450B (PHENOBARBITAL-INDUCIBLE). length=491;1e-155 /// CPA5_MOUSE // Gene:CYP2A5 Gene:CYP2A-5 Cytochrome P450 2A5 (EC 1.14.14.1) (CYPIIA5) (Coumarin 7-hydroxylase) (P450-15-COH) (P450-IIA3.2). length=494;0 /// CPA7_HUMAN // SW:Q13121 Gene:CYP2A7 Cytochrome P450 2A7 (EC 1.14.14.1) (CYPIIA7) (P450-IIA4). length=494;0 /// Q8WZB1 // Gene-TRE:CYP2C19 S-MEPHENYTOIN 4-HYDROXYLASE (FRAGMENT). length=217;5e-67 /// CPA3_RAT // Gene:CYP2A3 Gene:CYP2A-3 Cytochrome P450 2A3 (EC 1.14.14.1) (CYPIIA3) (Coumarin 7-hydroxylase). length=494;0 /// Q8WW80 // SIMILAR TO CYTOCHROME P450, SUBFAMILY IIC (MEPHENYTOIN 4-HYDROXYLASE), POLYPEPTIDE 9. length=162;7e-45 /// Q64614 // CYTOCHROME P450PB-1 (FRAGMENT). length=169;2e-52 /// CPA2_RAT // Gene:CYP2A2 Gene:CYP2A-2 Cytochrome P450 2A2 (EC 1.14.14.1) (CYPIIA2) (Testosterone 15-alpha- hydroxylase) (P450-UT-4). length=492;0 /// Q63853 // CYTOCHROME P450 2C24 (FRAGMENT). length=70;2e-14 /// Q91XG2 // SIMILAR TO CYTOCHROME P450, 2A4. length=494;0 /// Q8VCW9 // SIMILAR TO CYTOCHROME P450 IIA1 (HEPATIC STEROID HYDROXYLASE IIA1) GENE. length=492;0 /// Q16756 // CYTOCHROME P-450 (FRAGMENT). length=487;1e-139 /// Q64579 // RAT CYTOCHROME P450E-L (P450IIB2) (FRAGMENT). length=395;1e-124" "1422230_s_at MOE430A // cytochrome P450, 2a5 Curated Ortholog" chr19q13.2 // 41741203-41742987 // - // 99 "Hs.334345 // 4 // NM_000762 // cytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 6 // chr19 // 41741167-41748064 // -" 1598_g_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank L13720 "L13720 /FEATURE= /DEFINITION=HUMGAS Homo sapiens growth-arrest-specific protein (gas) mRNA, complete cds" L13720 L13720 2010428 nucleolar autoantigen (55kD) similar to rat synaptonemal complex protein SC65 Chr:17q21.2 Hs.207251 10609 AAH38984 /// Q14393 /// Q92791 --- --- --- --- NM_006455 // nucleolar autoantigen (55kD) similar to rat synaptonemal complex 7130 // synaptonemal complex formation // predicted/computed 5730 // nucleolus // experimental evidence /// 230 // nuclear mitotic chromosome // experimental evidence /// 5716 // synaptonemal complex // predicted/computed --- --- Chromatin/chromosome structure // predicted/computed DNA-associated (direct or indirect) // experimental evidence --- Nuclear // experimental evidence /// Nuclear nucleolus // experimental evidence --- --- "IPR000294 // Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain /// IPR002383 // Coagulation factor, Gla region /// IPR001881 // EGF-like calcium-binding /// IPR000152 // Aspartic acid and asparagine hydroxylation site /// IPR001791 // Laminin G /// IPR000561 // EGF-like domain" --- IPB003865 // Prolyl 4-hydroxylase alpha subunit C-terminus;0.001 --- --- --- 5454038 // nucleolar autoantigen (55kD) similar to rat synaptonemal complex [Homo sapiens];0.0 /// 11322247 // nucleolar protein No55 [Homo sapiens];0.0 Q14393 // Gene-TRE:GAS6 GROWTH-ARREST-SPECIFIC PROTEIN. length=678;0 rc_AI102871_at RG-U34C // 88.33% ESTs Putative Ortholog /// 1369805_at RAE230A // 88.33% SC65 synaptonemal complex protein Putative Ortholog /// 1388531_at RAE230A // 88.33% ESTs Putative Ortholog /// X65454_g_at RG-U34A // 88.33% SC65 synaptonemal complex protein Putative Ortholog /// X65454_at RG-U34A // 88.33% SC65 synaptonemal complex protein Putative Ortholog /// 1455288_at MOE430A // 86.87% RIKEN cDNA 1110036O03 gene Putative Ortholog /// 100471_at MG-U74Av2 // 86.87% RIKEN cDNA 1110036O03 gene Putative Ortholog /// aa028785_s_at Mu11KsubA // 86.87% RIKEN cDNA 1110036O03 gene Putative Ortholog --- --- 160020_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank Z48481 Z48481 /FEATURE=cds /DEFINITION=HSMMPM1 H.sapiens mRNA for membrane-type matrix metalloproteinase 1 /NOTE=replacement of probe set 1301_s_at 4870053 4870053 --- matrix metalloproteinase 14 (membrane-inserted) MMP14 Chr:14q11-q12 Hs.2399 4323 P50281 EC:3.4.24 600754 ENSG00000157227 --- NM_004995 // matrix metalloproteinase 14 preproprotein 6508 // proteolysis and peptidolysis // experimental evidence 5887 // integral to plasma membrane // experimental evidence 4222 // metalloendopeptidase // experimental evidence /// 8270 // zinc binding // predicted/computed --- --- Integral membrane // not recorded Extracellular matrix maintenance // not recorded --- Matrix_Metalloproteinases --- "IPR001818 // Matrixin /// IPR006025 // Neutral zinc metallopeptidases, zinc-binding region /// IPR006026 // Neutral zinc metallopeptidase /// IPR000585 // Hemopexin repeat" "Peptidase_M10_N // Matrix metalloprotease, N-terminal do;3.1e-17 /// hemopexin // Hemopexin;3e-65 /// Peptidase_M10 // Matrixin;3.1e-43" "IPB000130 // Neutral zinc metallopeptidases, zinc-binding region;0.00011" "d1fbl_1 // b.66.1.1 // Collagenase, C-terminal domain ;2.57e-65 /// d1slm_1 // a.20.1.2 // Stromelysin-1 (MMP-3) ;6.53e-19 /// d1jk3a_ // d.92.1.11 // Macrophage elastase (MMP-12) ;3.09e-55" numtm:1;Nin-prob:0.03638;type:tm; EC:3.4.24.12 // HE_PARLI HATCHING ENZYME PRECURSOR (EC 3.4.24.12) (HE) (HEZ) (ENVELYSIN) (SEA-URCHIN-HATCHING PROTEINASE).;5.04e-170 4826834 // matrix metalloproteinase 14 preproprotein; membrane-type matrix metalloproteinase 1; membrane-type-1 matrix metalloproteinase [Homo sapiens];0.0 /// 2135759 // MT-MMP - human;0.0 MM14_MOUSE // SW:O08645 SW:O35369 Gene:MMP14 Gene:MTMMP Matrix metalloproteinase-14 precursor (EC 3.4.24.-) (MMP-14) (Membrane-type matrix metalloproteinase 1) (MT-MMP 1) (MTMMP1) (Membrane-type-1 matrix metalloproteinase) (MT1-MMP) (MT1MMP) (MMP- X1) (MT-MMP). length=582;0 /// MM14_RAT // Gene:MMP14 Gene:MTMMP Matrix metalloproteinase-14 precursor (EC 3.4.24.-) (MMP-14) (Membrane-type matrix metalloproteinase 1) (MT-MMP 1) (MTMMP1) (Membrane-type-1 matrix metalloproteinase) (MT1-MMP) (MT1MMP) (MT- MMP). length=582;0 /// O35369 // Gene-TRE:MMP14 MATRIX METALLOPROTEINASE-14. length=581;0 /// MM14_HUMAN // SW:Q92678 Gene:MMP14 Matrix metalloproteinase-14 precursor (EC 3.4.24.-) (MMP-14) (Membrane-type matrix metalloproteinase 1) (MT-MMP 1) (MTMMP1) (Membrane-type-1 matrix metalloproteinase) (MT1-MMP) (MT1MMP) (MMP- X1). length=582;0 /// Q9UHK5 // MATRIX METALLOPROTEINASE 1 (FRAGMENT). length=36;6e-12 /// O08645 // MEMBRANE-TYPE MATRIX METALLOPROTEINASE 1. length=582;0 "1367860_a_at RAE230A // 84.6% matrix metalloproteinase 14, membrane-inserted Putative Ortholog /// X83537_at RG-U34A // 84.6% matrix metalloproteinase 14, membrane-inserted Putative Ortholog /// rc_AI070584_at RG-U34C // 84.6% matrix metalloproteinase 14, membrane-inserted Putative Ortholog" chr14q11.2 // 17103582-17103912 // + // 100 Hs.2399 // 2 // NM_004995 // matrix metalloproteinase 14 (membrane-inserted) // chr14 // 17093093-17104104 // + 1729_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank L41690 "L41690 /FEATURE= /DEFINITION=HUMTRADD Homo sapiens TNF receptor-1 associated protein (TRADD) mRNA, 3' end of cds" L41690 L41690 --- TNFRSF1A-associated via death domain TRADD Chr:16q22 Hs.89862 8717 Q15628 --- 603500 --- --- NM_003789 // TNFRSF1A-associated via death domain isoform 1 /// NM_153425 // TNFRSF1A-associated via death domain isoform 2 7165 // signal transduction // experimental evidence /// 6917 // induction of apoptosis // experimental evidence --- --- Regulatory subunit // not recorded --- --- Cell death/Apoptosis // predicted/computed --- Apoptosis --- IPR000488 // Death domain death // Death domain;5.2e-15 --- "d1f3va_ // d.58.22.1 // TRADD, N-terminal domain ;3.78e-76 /// d1f3va_ // d.58.22.1 // TRADD, N-terminal domain ;6.98e-50" --- --- 808915 // tumor necrosis factor receptor type 1 associated protein;e-140 /// 13378137 // TNFRSF1A-associated via death domain isoform 1; tumor necrosis factor receptor-1-associated protein; TNFR1-associated death domain protein; tumor necrosis factor receptor type 1 associated death domain protein [Homo sapiens];e-140 /// 808915 // tumor necrosis factor receptor type 1 associated protein;e-175 /// 13378137 // TNFRSF1A-associated via death domain isoform 1; tumor necrosis factor receptor-1-associated protein; TNFR1-associated death domain protein; tumor necrosis factor receptor type 1 associated death domain protein [Homo sapiens];e-175 TRAD_HUMAN // Gene:TRADD Tumor necrosis factor receptor type 1 associated DEATH domain protein (TNFR1-associated DEATH domain protein) (TNFRSF1A-associated via death domain). length=312;1e-176 1439910_a_at MOE430B // 82.59% RIKEN cDNA 9130005N23 gene Putative Ortholog /// 1429117_at MOE430A // 82.59% RIKEN cDNA 9130005N23 gene Putative Ortholog /// 1452622_a_at MOE430A // 82.59% RIKEN cDNA 9130005N23 gene Putative Ortholog /// 136534_at MG-U74Cv2 // 82.59% RIKEN cDNA 9130005N23 gene Putative Ortholog /// 160689_r_at MG-U74Av2 // 82.59% RIKEN cDNA 9130005N23 gene Putative Ortholog /// 1446498_at MOE430B // 82.59% hypothetical protein E230031K19 Putative Ortholog --- --- 1773_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank L00635 "L00635 /FEATURE= /DEFINITION=HUMFPTB Human farnesyl-protein transferase beta-subunit mRNA, complete cds" L00635 L00635 --- "farnesyltransferase, CAAX box, beta" FNTB Chr:14q23-q24 Hs.276 2342 P49356 EC:2.5.1 134636 ENSG00000125954 --- "NM_002028 // farnesyltransferase, CAAX box, beta" 6503 // C-terminal protein farnesylation // experimental evidence 5737 // cytoplasm // not recorded 3824 // enzyme // extended:inferred from electronic annotation; prenyltrans; 4.5e-13 /// 4660 // protein farnesyltransferase // experimental evidence Transferase // experimental evidence --- --- --- Cytoplasmic // not recorded --- --- IPR001330 // Prenyltransferase/squalene oxidase prenyltrans // Prenyltransferase and squalene oxidase re;3.6e-69 IPB001330 // Prenyltransferase and squalene oxidase repeats;1.4e-05 "d1jcqb_ // a.102.4.3 // Protein farnesyltransferase, beta-subunit ;1.09e-152" --- "EC:5.4.99.8 // CAS1_ARATH CYCLOARTENOL SYNTHASE (EC 5.4.99.8) (2,3-EPOXYSQUALENE--CYCLOARTENOL CYCLASE).;1.24e-07" "10835059 // farnesyltransferase, CAAX box, beta [Homo sapiens];0.0 /// 266753 // Protein farnesyltransferase beta subunit (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta);0.0" PFTB_HUMAN // Gene:FNTB Protein farnesyltransferase beta subunit (EC 2.5.1.-) (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta). length=437;0 /// PFTB_RAT // Gene:FNTB Protein farnesyltransferase beta subunit (EC 2.5.1.-) (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta). length=437;0 rc_AI230914_at RG-U34A // 81.53% farnesyltransferase beta subunit Putative Ortholog /// 1370829_at RAE230A // 81.53% farnesyltransferase beta subunit Putative Ortholog /// rc_AI136396_at RG-U34A // 81.53% farnesyltransferase beta subunit Putative Ortholog chr14q23.3 // 59313632-59321811 // + // 100 "Hs.276 // 5 // NM_002028 // farnesyltransferase, CAAX box, beta // chr14 // 59247315-59323027 // +" 177_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank U38545 "U38545 /FEATURE= /DEFINITION=HSU38545 Human ARF-activated phosphatidylcholine-specific phospholipase D1a (hPLD1) mRNA, complete cds" U38545 U38545 --- "phospholipase D1, phophatidylcholine-specific" PLD1 Chr:3q26 Hs.82587 5337 Q13393 --- 602382 ENSG00000075651 --- "NM_002662 // phospholipase D1, phophatidylcholine-specific" 7242 // intracellular signaling cascade // extended:Unknown; PX; 1.2e-25 /// 7265 // RAS protein signal transduction // predicted/computed /// 7264 // small GTPase mediated signal transduction // experimental evidence /// 6935 // chemotaxis // predicted/computed /// 6644 // phospholipid metabolism // not recorded 16020 // membrane // experimental evidence 4630 // phospholipase D // experimental evidence Hydrolase // experimental evidence --- --- Cell migration/motility // predicted/computed Unspecified membrane // experimental evidence --- --- IPR001849 // Pleckstrin-like /// IPR001683 // Phox-like /// IPR001092 // Basic helix-loop-helix dimerization domain bHLH /// IPR001736 // Phospholipase D/Transphosphatidylase PX // PX domain;1.2e-25 /// PH // PH domain;1.7e-10 /// PLDc // Phospholipase D. Active site motif;1.8e-17 IPB001683 // PX (Bem1/NCF1/PI3K) domain;7e-05 d1f0ia1 // d.136.1.2 // Phospholipase D ;3.64e-08 --- EC:3.1.4.4 // PLD1_HUMAN PHOSPHOLIPASE D1 (EC 3.1.4.4) (PLD 1) (CHOLINE PHOSPHATASE 1) (PHOSPHATIDYLCHOLINE-HYDROLYZING PHOSPHOLIPASE D1).;1e-300 "7459633 // phospholipase D (EC 3.1.4.4) 1a - rat;0.0 /// 4505873 // phospholipase D1, phophatidylcholine-specific; phospholipase D1, phosphatidylcholine-specific [Homo sapiens];0.0" O54765 // PHOSPHOLIPASE D. length=1074;0 /// PLD1_RAT // SW:P70497 SW:O35856 SW:O54765 SW:O08959 SW:Q9QWJ6 Gene:PLD1 Phospholipase D1 (EC 3.1.4.4) (PLD 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D1) (rPLD1). length=1074;0 /// PLD1_MOUSE // SW:O35911 Gene:PLD1 Phospholipase D1 (EC 3.1.4.4) (PLD 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D1) (mPLD1). length=1074;0 /// O08959 // PHOSPHOLIPASE D (PHOSPHOLIPASE D 1). length=1036;0 /// O35856 // Gene-TRE:RPLD1 PHOSPHOLIPASE D. length=1036;0 /// PLD1_HUMAN // Gene:PLD1 Phospholipase D1 (EC 3.1.4.4) (PLD 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D1) (hPLD1). length=1074;0 /// O35911 // Gene-TRE:PLD1 Gene-TRE:MPLD1 PHOSPHATIDYLCHOLINE-SPECIFIC PHOSPHOLIPASE D1B. length=1035;0 1370531_a_at RAE230A // 84.62% Phoshpolipase D gene 1 Putative Ortholog /// 1370530_a_at RAE230A // 84.62% Phoshpolipase D gene 1 Putative Ortholog /// AF017251_at RG-U34A // 84.62% Phoshpolipase D gene 1 Putative Ortholog /// AB000778_s_at RG-U34A // 84.62% Phoshpolipase D gene 1 Putative Ortholog /// U69550_at RG-U34A // 84.62% Phoshpolipase D gene 1 Putative Ortholog /// 1370529_a_at RAE230A // 84.62% Phoshpolipase D gene 1 Putative Ortholog /// 1370532_at RAE230A // 84.62% Phoshpolipase D gene 1 Putative Ortholog /// AF017251_at RN-U34 // 84.62% Phoshpolipase D gene 1 Putative Ortholog /// 1370679_at RAE230A // 84.62% Phoshpolipase D gene 1 Putative Ortholog /// 1437113_s_at MOE430A // 85.76% hypothetical protein LOC229153 Putative Ortholog /// 92474_at MG-U74Av2 // 85.76% hypothetical protein LOC229153 Putative Ortholog /// 110715_at MG-U74Bv2 // 85.76% hypothetical protein LOC229153 Putative Ortholog /// 1437112_at MOE430A // 85.76% hypothetical protein LOC229153 Putative Ortholog /// 92475_g_at MG-U74Av2 // 85.76% hypothetical protein LOC229153 Putative Ortholog chr3q26.2 // 172277990-172280587 // - // 100 "Hs.82587 // 2 // NM_002662 // phospholipase D1, phophatidylcholine-specific // chr3 // 172277979-172485631 // -" 179_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank U38980 "U38980 /FEATURE= /DEFINITION=U38980 Human PMS2 related (hPMSR6) mRNA, complete cds" U38980 U38980 --- postmeiotic segregation increased 2-like 9 PMS2L9 Chr:7q11.23 Hs.180121 5387 Q13670 /// Q16603 /// Q8TAI9 --- --- ENSG00000127957 --- NM_005395 // postmeiotic segregation increased 2-like 9 --- --- 3676 // nucleic acid binding // extended:Unknown; KRAB; 1.6e-23 --- --- --- --- --- --- --- "IPR003594 // ATP-binding protein, ATPase-like" KRAB // KRAB box;1.6e-23 PR00344 // Bacterial sensor protein C-terminal signature;0.0048 --- --- --- 4239954 // PMS2L15 [Homo sapiens];8e-38 /// 4885553 // postmeiotic segregation increased 2-like 9 [Homo sapiens];e-154 Q9UDS2 // WUGSC:H_DJ0953A04.1A PROTEIN (FRAGMENT). length=114;2e-58 /// Q13670 // Gene-TRE:HPMSR6 HPMSR6. length=270;1e-161 --- chr7q11.23 // 75170271-75170442 // + // 90 Hs.180121 // 2 // BC015750 // postmeiotic segregation increased 2-like 9 // chr7 // 75145803-75216520 // + 1861_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank U66879 "U66879 /FEATURE= /DEFINITION=HSU66879 Human Bcl-2 binding component 6 (bbc6) mRNA, complete cds" U66879 U66879 --- BCL2-antagonist of cell death BAD Chr:11q12.3 Hs.76366 572 Q92934 --- 603167 ENSG00000002330 --- NM_004322 // BCL2-antagonist of cell death protein /// NM_032989 // BCL2-antagonist of cell death protein 8632 // apoptotic program // experimental evidence --- --- --- --- --- Cell death/Apoptosis // not recorded --- --- --- "IPR000712 // Apoptosis regulator Bcl-2 protein, BH" --- --- --- --- --- 1683637 // Bcl-2 binding component 6 [Homo sapiens];3e-78 /// 10835069 // BCL2-antagonist of cell death protein; BCL2-binding protein; BCL2-binding component 6; BCL-X/BCL-2 binding protein [Homo sapiens];7e-97 BAD_HUMAN // SW:O14803 Gene:BAD Gene:BBC6 Gene:BCL2L8 Bcl2-antagonist of cell death (BAD) (Bcl-2 binding component 6) (Bcl-XL/Bcl-2 associated death promoter). length=168;7e-79 /// O14803 // Gene-TRE:BAD BCL-X/BCL-2 BINDING PROTEIN (BCL2-ANTAGONIST OF CELL DEATH) (FRAGMENT). length=168;7e-79 "AF003523_s_at RT-U34 // 83.81% bcl-2 associated death agonist Putative Ortholog /// AF003523_s_at RN-U34 // 83.81% bcl-2 associated death agonist Putative Ortholog /// 1388952_at RAE230A // 83.81% ESTs, Moderately similar to hypothetical protein MGC4172 [Homo sapiens] [H.sapiens] Putative Ortholog /// 1386991_a_at RAE230A // 83.81% bcl-2 associated death agonist Putative Ortholog /// rc_AI172157_at RG-U34C // 83.81% ESTs, Moderately similar to hypothetical protein MGC4172 [Homo sapiens] [H.sapiens] Putative Ortholog /// rc_AA818072_s_at RG-U34A // 83.81% bcl-2 associated death agonist Putative Ortholog /// AF003523_s_at RG-U34A // 83.81% bcl-2 associated death agonist Putative Ortholog /// rc_AA818072_s_at RN-U34 // 83.81% bcl-2 associated death agonist Putative Ortholog /// 1436377_at MOE430B // 80.35% Bcl-associated death promoter Putative Ortholog /// 114524_at MG-U74Bv2 // 80.35% Bcl-associated death promoter Putative Ortholog /// 1416582_a_at MOE430A // 80.35% Bcl-associated death promoter Putative Ortholog /// 161500_i_at MG-U74Av2 // 80.35% Bcl-associated death promoter Putative Ortholog /// 1416583_at MOE430A // 80.35% Bcl-associated death promoter Putative Ortholog /// L37296_s_at Mu11KsubA // 80.35% Bcl-associated death promoter Putative Ortholog /// 107861_at MG-U74Bv2 // 80.35% Bcl-associated death promoter Putative Ortholog /// 99670_at MG-U74Av2 // 80.35% Bcl-associated death promoter Putative Ortholog" chr11q13.1 // 65720638-65720711 // - // 89 Hs.76366 // 6 // NM_004322 // BCL2-antagonist of cell death // chr11 // 65718855-65733635 // - /// Hs.76366 // 6 // NM_032989 // BCL2-antagonist of cell death // chr11 // 65718855-65733718 // - 200000_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_006445.1 "gb:NM_006445.1 /DEF=Homo sapiens U5 snRNP-specific protein (220 kD), ortholog of S. cerevisiae Prp8p (PRP8), mRNA. /FEA=mRNA /GEN=PRP8 /PROD=U5 snRNP-specific protein (220 kD), ortholog ofS. cerevisiae Prp8p /DB_XREF=gi:5453983 /UG=Hs.181368 U5 snRNP-specific protein (220 kD), ortholog of S. cerevisiae Prp8p /FL=gb:AB007510.1 gb:AF092565.1 gb:NM_006445.1" g5453983 Hs.181368.0 "1500074332 (2 transcripts, 2 gene clusters)" PRP8 pre-mRNA processing factor 8 homolog (yeast) PRPF8 Chr:17p13.3 Hs.181368 10594 O14547 /// O75965 /// Q9BW78 --- --- --- --- NM_006445 // U5 snRNP-specific protein 6371 // mRNA splicing // predicted/computed /// 6397 // mRNA processing // predicted/computed 5634 // nucleus // not recorded /// 5682 // snRNP U5 // experimental evidence 8248 // pre-mRNA splicing factor // predicted/computed RNA-binding protein // predicted/computed /// Spliceosomal subunit // experimental evidence RNA processing/modification // experimental evidence /// RNA splicing // experimental evidence RNA-associated // experimental evidence --- Nuclear // predicted/computed --- --- IPR000555 // Mov34 family Mov34 // Mov34/MPN/PAD-1 family;1.3e-26 --- --- --- --- "2463577 // PRP8 protein [Homo sapiens];0.0 /// 17999537 // U5 snRNP-specific protein; U5 snRNP-specific protein (220 kD), ortholog of S. cerevisiae Prp8p; precursor mRNA processing protein; splicing factor Prp8 [Homo sapiens];0.0" Q99PV0 // Gene-TRE:PRP8 PRE-MRNA PROCESSING 8 PROTEIN. length=2335;0 /// O14547 // Gene-TRE:HPRP8 PRP8 PROTEIN. length=2335;0 /// O75965 // SPLICING FACTOR PRP8. length=2335;0 rc_AA859532_at RG-U34A // 86.58% EST Putative Ortholog /// 1386452_at RAE230A // 86.58% EST Putative Ortholog /// 168106_at MG-U74Cv2 // pre-mRNA processing factor 8 Curated Ortholog /// 1422453_at MOE430A // pre-mRNA processing factor 8 Curated Ortholog /// aa155321_g_at Mu11KsubA // pre-mRNA processing factor 8 Curated Ortholog /// aa155321_at Mu11KsubA // pre-mRNA processing factor 8 Curated Ortholog /// 98574_at MG-U74Av2 // pre-mRNA processing factor 8 Curated Ortholog chr17p13.3 // 1889639-1890386 // - // 99 Hs.181368 // 5 // NM_006445 // PRP8 pre-mRNA processing factor 8 homolog (yeast) // chr17 // 1889546-1923792 // - 200001_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001749.1 "gb:NM_001749.1 /DEF=Homo sapiens calpain 4, small subunit (30K) (CAPN4), mRNA. /FEA=mRNA /GEN=CAPN4 /PROD=calpain 4 small subunit /DB_XREF=gi:4502564 /UG=Hs.74451 calpain 4, small subunit (30K) /FL=gb:BC000592.1 gb:NM_001749.1" g4502564 Hs.74451.0 --- "calpain, small subunit 1" CAPNS1 Chr:19q13.12 Hs.74451 826 AAH17308 /// AAH18931 /// P04632 /// Q96EW0 --- --- ENSG00000126247 --- "NM_001749 // calpain, small subunit 1" 8284 // positive regulation of cell proliferation // experimental evidence --- 5509 // calcium ion binding // extended:inferred from electronic annotation; fhand; 0.14 /// 4198 // calpain // predicted/computed Regulatory subunit // not recorded Protein degradation // not recorded --- --- --- --- --- IPR002048 // Calcium-binding EF-hand efhand // EF hand;5.4e-09 IPB003474 // GntP family permease;0.0088 "d1df0a1 // a.39.1.7 // Calpain large subunit, C-terminal domain (domain IV) ;1.52e-56" --- --- "4502565 // calpain, small subunit 1; calpain, small polypeptide; calcium-dependent protease, small subunit; calcium-activated neutral proteinase; calpain 4, small subunit (30K) [Homo sapiens];e-156 /// 18314496 // calpain, small subunit 1 [Homo sapiens];e-156" "Q9BQC8 // CALPAIN 3, (P94) (UNKNOWN) (PROTEIN FOR MGC:10767). length=156;3e-50 /// P97572 // Gene-TRE:CSS1 CALPAIN SMALL SUBUNIT (EC 3.4.22.17) (FRAGMENT). length=266;1e-144 /// CANS_MOUSE // Gene:CAPNS1 Gene:CAPN4 Calcium-dependent protease, small subunit (Calpain regulatory subunit) (Calcium-activated neutral proteinase) (CANP). length=269;1e-146 /// Q9R1C5 // CALPAIN SMALL SUBUNIT (FRAGMENT). length=170;9e-93 /// CANS_RAT // SW:P97572 Gene:CAPNS1 Gene:CAPN4 Gene:CSS1 Calcium-dependent protease, small subunit (Calpain regulatory subunit) (Calcium-activated neutral proteinase) (CANP) (Fragment). length=266;1e-144 /// Q96L46 // Gene-TRE:CAPNS2 CALPAIN SMALL SUBUNIT 2. length=248;2e-92 /// Q9D7J7 // Gene-TRE:2310005G05RIK 2310005G05RIK PROTEIN. length=247;2e-92 /// Q9BPV4 // SIMILAR TO RIKEN CDNA 2310005G05 GENE. length=248;7e-93 /// CANS_HUMAN // SW:Q8WTX3 Gene:CAPNS1 Gene:CAPN4 Gene:CAPNS Calcium-dependent protease, small subunit (Calpain regulatory subunit) (Calcium-activated neutral proteinase) (CANP). length=268;1e-157 /// Q8WTX3 // CALPAIN, SMALL SUBUNIT 1. length=268;1e-157 /// Q8VEK4 // SIMILAR TO CALPAIN 4. length=268;1e-146" "rc_AI230702_at RG-U34C // ESTs, Highly similar to hematological and neurological expressed sequence 1 [Mus musculus] [M.musculus] Curated Ortholog /// rc_AA891935_at RG-U34A // calpain, small subunit 1 Curated Ortholog /// 1388581_at RAE230A // ESTs, Highly similar to hematological and neurological expressed sequence 1 [Mus musculus] [M.musculus] Curated Ortholog /// 1367462_at RAE230A // calpain, small subunit 1 Curated Ortholog /// rc_AI235780_at RG-U34C // calpain, small subunit 1 Curated Ortholog /// rc_AA892814_s_at RN-U34 // calpain, small subunit 1 Curated Ortholog /// rc_AI236570_s_at RG-U34C // calpain, small subunit 1 Curated Ortholog /// 1398936_at RAE230A // calpain, small subunit 1 Curated Ortholog /// 1371336_at RAE230A // ESTs, Highly similar to hematological and neurological expressed sequence 1 [Mus musculus] [M.musculus] Curated Ortholog /// rc_AA942716_at RG-U34B // ESTs, Highly similar to hematological and neurological expressed sequence 1 [Mus musculus] [M.musculus] Curated Ortholog /// rc_AA964422_f_at RG-U34B // calpain, small subunit 1 Curated Ortholog /// U53859_g_at RG-U34A // calpain, small subunit 1 Curated Ortholog /// U53859_at RN-U34 // calpain, small subunit 1 Curated Ortholog /// U53859_at RG-U34A // calpain, small subunit 1 Curated Ortholog /// rc_AI236570_s_at RN-U34 // calpain, small subunit 1 Curated Ortholog /// U53859_g_at RN-U34 // calpain, small subunit 1 Curated Ortholog /// rc_AA892814_s_at RG-U34A // calpain, small subunit 1 Curated Ortholog /// Msa.42827.0_s_at Mu11KsubB // calpain, small subunit 1 Curated Ortholog /// 1426400_a_at MOE430A // calpain, small subunit 1 Curated Ortholog /// 165397_f_at MG-U74Bv2 // calpain, small subunit 1 Curated Ortholog /// Msa.33146.0_f_at Mu11KsubB // calpain, small subunit 1 Curated Ortholog /// 100610_at MG-U74Av2 // calpain, small subunit 1 Curated Ortholog /// aa646384_at Mu11KsubA // calpain, small subunit 1 Curated Ortholog /// Msa.3944.0_f_at Mu11KsubB // calpain, small subunit 1 Curated Ortholog /// Msa.27359.0_f_at Mu11KsubB // calpain, small subunit 1 Curated Ortholog" chr19q13.12 // 37089435-37090159 // + // 99 "Hs.74451 // 10 // NM_001749 // calpain, small subunit 1 // chr19 // 37079872-37090211 // +" 200002_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_007209.1 "gb:NM_007209.1 /DEF=Homo sapiens ribosomal protein L35 (RPL35), mRNA. /FEA=mRNA /GEN=RPL35 /PROD=ribosomal protein L35 /DB_XREF=gi:6005859 /UG=Hs.182825 ribosomal protein L35 /FL=gb:BC000348.1 gb:U12465.1 gb:NM_007209.1" g6005859 Hs.182825.0 --- ribosomal protein L35 RPL35 Chr:9q34.1 Hs.182825 11224 P42766 /// Q96QJ7 --- --- ENSG00000136942 --- NM_007209 // ribosomal protein L35 6412 // protein biosynthesis // experimental evidence 5730 // nucleolus // experimental evidence /// 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // experimental evidence 3729 // mRNA binding // experimental evidence /// 3735 // structural protein of ribosome // experimental evidence RNA-binding protein // not recorded /// Ribosomal subunit // not recorded Protein synthesis // not recorded Ribosome-associated // not recorded General cellular role // not recorded Cytoplasmic // not recorded --- --- IPR001854 // Ribosomal protein L29 Ribosomal_L29 // Ribosomal L29 protein;1.7e-15 IPB001854 // Ribosomal protein L29;1.9e-27 --- --- --- 6005860 // ribosomal protein L35; 60S ribosomal protein L35 [Homo sapiens];2e-62 /// 15012043 // Similar to ribosomal protein L35 [Homo sapiens];5e-62 Q9W499 // Gene-TRE:CG4111 CG4111 PROTEIN. length=121;4e-37 /// RL35_HUMAN // Gene:RPL35 60S ribosomal protein L35. length=122;1e-62 /// RL35_CAEEL // Gene:RPL-35 Gene:ZK652.4 60S ribosomal protein L35. length=123;1e-40 /// Q96QJ7 // SIMILAR TO RIBOSOMAL PROTEIN L35. length=123;7e-63 /// Q9M3D2 // Gene-TRE:T26I12.50 RIBOSOMAL PROTEIN L35-LIKE. length=123;2e-38 /// RL35_YEAST // SW:P39930 Gene:RPL35A Gene:SOS1 Gene:YDL191W Gene:D1249 Gene:RPL35B Gene:SOS2 Gene:YDL136W OR Gene:D2170 60S RIBOSOMAL PROTEIN L35. length=120;4e-31 /// Q9SF53 // Gene-TRE:F11F8_7 PUTATIVE 60S RIBOSOMAL PROTEIN L35. length=123;2e-38 /// RL35_RAT // Gene:RPL35 60S RIBOSOMAL PROTEIN L35. length=122;6e-62 /// Q9LZ41 // Gene-TRE:T22P11_200 RIBOSOMAL PROTEIN L35-LIKE. length=123;1e-38 /// O80626 // Gene-TRE:AT2G39390 Gene-TRE:F12L6.5/AT2G39390 60S RIBOSOMAL PROTEIN L35 (PUTATIVE 60S RIBOSOMAL PROTEIN L35). length=123;2e-38 --- chr9q33.3 // 119269031-119270756 // - // 100 Hs.182825 // 4 // NM_007209 // ribosomal protein L35 // chr9 // 119266712-119270790 // - 200003_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000991.1 "gb:NM_000991.1 /DEF=Homo sapiens ribosomal protein L28 (RPL28), mRNA. /FEA=mRNA /GEN=RPL28 /PROD=ribosomal protein L28 /DB_XREF=gi:4506626 /UG=Hs.4437 ribosomal protein L28 /FL=gb:BC000072.1 gb:NM_000991.1 gb:U14969.1" g4506626 Hs.4437.0 "1500074333 (2 transcripts, 2 gene clusters)" ribosomal protein L28 RPL28 Chr:19q13.4 Hs.356371 6158 P46779 --- --- --- --- NM_000991 // ribosomal protein L28 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR002672 // Ribosomal L28e protein Ribosomal_L28e // Ribosomal L28e protein family;4.1e-79 IPB002672 // Ribosomal L28e protein family;4.1e-82 --- --- --- 14603467 // Unknown (protein for MGC:20328) [Homo sapiens];3e-72 /// 13904866 // ribosomal protein L28; 60S ribosomal protein L28 [Homo sapiens];1e-72 Q9BWQ0 // RIBOSOMAL PROTEIN L28 (UNKNOWN) (PROTEIN FOR MGC:20378) (PROTEIN FOR MGC:20081). length=137;6e-73 /// RL28_RAT // Gene:RPL28 60S RIBOSOMAL PROTEIN L28. length=136;6e-70 /// Q96FX1 // UNKNOWN (PROTEIN FOR MGC:20328). length=137;1e-72 /// RL28_MOUSE // Gene:RPL28 60S RIBOSOMAL PROTEIN L28. length=136;8e-72 /// RL28_HUMAN // SW:Q9BWQ0 SW:Q96FX1 Gene:RPL28 60S ribosomal protein L28. length=136;2e-72 /// O60251 // RIBOSOMAL PROTEIN L28 (FRAGMENT). length=53;1e-22 --- chr19q13.42 // 56322344-56324228 // + // 100 Hs.356371 // 7 // NM_000991 // ribosomal protein L28 // chr19 // 56321902-56324344 // + 200004_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001418.1 "gb:NM_001418.1 /DEF=Homo sapiens eukaryotic translation initiation factor 4 gamma, 2 (EIF4G2), mRNA. /FEA=mRNA /GEN=EIF4G2 /PROD=eukaryotic translation initiation factor 4gamma, 2 /DB_XREF=gi:4503538 /UG=Hs.183684 eukaryotic translation initiation factor 4 gamma, 2 /FL=gb:U73824.1 gb:U76111.1 gb:NM_001418.1" g4503538 Hs.183684.0 --- "eukaryotic translation initiation factor 4 gamma, 2" EIF4G2 Chr:11p15 Hs.183684 1982 P78344 /// Q8NI71 /// Q96C16 --- --- ENSG00000110321 --- "NM_001418 // eukaryotic translation initiation factor 4 gamma, 2" 7050 // cell cycle arrest // predicted/computed /// 6445 // regulation of translation // experimental evidence /// 8219 // cell death // predicted/computed 8304 // eukaryotic translation initiation factor 4 complex // experimental evidence "3723 // RNA binding // extended:inferred from electronic annotation; MIF4G; 4.6e-63 /// 8135 // translation factor, nucleic acid binding // experimental evidence" RNA-binding protein // predicted/computed Protein synthesis // experimental evidence Protein synthesis factor // experimental evidence General cellular role // experimental evidence Cytoplasmic // predicted/computed --- --- "IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) /// IPR003890 // Initiation factor eIF-4 gamma, middle /// IPR003891 // Initiation factor eIF-4 gamma, MA3 /// IPR003307 // eIF4-gamma/eIF5/eIF2-epsilon" MA3 // MA3 domain;4.2e-37 /// MIF4G // MIF4G domain;4.6e-63 /// W2 // eIF4-gamma/eIF5/eIF2-epsilon;2.9e-33 IPB003890 // Middle domain of eIF4G;1.2e-05 d1hu3a_ // a.118.1.2 // Eukaryotic initiation factor eIF4G ;8.91e-70 --- --- "3218320 // death associated protein 5 [Homo sapiens];0.0 /// 4503539 // eukaryotic translation initiation factor 4 gamma, 2; Eukaryotic translation initiation factor 4G-like 1; p97 [Homo sapiens];0.0" Q62448 // TRE:P97867 Gene-TRE:EIF4G2 EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 2 (TRANSLATION REPRESSOR NAT1). length=907;0 /// P78344 // TRE:O60877 TRE:P78404 Gene-TRE:EIF4G2 Gene-TRE:DAP5 Gene-TRE:DAP-5 EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 2 (P97) (DEATH ASSOCIATED PROTEIN 5) (DAP-5) (TRANSLATION REPRESSOR NAT1). length=907;0 /// Q921U3 // UNKNOWN (PROTEIN FOR IMAGE:3598196) (FRAGMENT). length=113;1e-60 --- chr11p15.4 // 11388870-11389241 // - // 100 "Hs.183684 // 8 // NM_001418 // eukaryotic translation initiation factor 4 gamma, 2 // chr11 // 11388723-11400594 // -" 200005_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_003753.1 "gb:NM_003753.1 /DEF=Homo sapiens eukaryotic translation initiation factor 3, subunit 7 (zeta, 6667kD) (EIF3S7), mRNA. /FEA=mRNA /GEN=EIF3S7 /PROD=eukaryotic translation initiation factor 3,subunit 7 (zeta, 6667kD) /DB_XREF=gi:4503522 /UG=Hs.55682 eukaryotic translation initiation factor 3, subunit 7 (zeta, 6667kD) /FL=gb:BC000328.1 gb:BC000469.1 gb:U54558.1 gb:NM_003753.1" g4503522 Hs.55682.0 --- "eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa" EIF3S7 Chr:22q13.1 Hs.55682 8664 O15371 --- --- ENSG00000100353 --- NM_003753 // eukaryotic translation initiation factor 3 subunit 7 6446 // regulation of translational initiation // predicted/computed 5852 // eukaryotic translation initiation factor 3 complex // predicted/computed 3743 // translation initiation factor // predicted/computed --- Protein synthesis // predicted/computed Protein synthesis factor // predicted/computed --- Cytoplasmic // predicted/computed Translation_Factors --- --- --- IPB001580 // Calreticulin family;0.0019 --- --- --- "4503523 // eukaryotic translation initiation factor 3 subunit 7; translation initiation factor eIF3 p66 subunit [Homo sapiens];0.0 /// 20343895 // eukaryotic translation initiation factor 3, subunit 7 (zeta, 66/ [Mus musculus];0.0" IF37_HUMAN // Gene:EIF3S7 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66). length=548;0 /// IF37_MOUSE // Gene:EIF3S7 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66) (eIF3d). length=547;0 "1393232_at RAE230B // 89.89% ESTs, Weakly similar to MT1_RAT METALLOTHIONEIN-I (MT-I) [R.norvegicus] Putative Ortholog /// rc_AA819204_at RG-U34C // 89.89% ESTs, Weakly similar to MT1_RAT METALLOTHIONEIN-I (MT-I) [R.norvegicus] Putative Ortholog /// 1446997_at MOE430B // eukaryotic translation initiation factor 3, subunit 7 (zeta) Curated Ortholog /// 165354_r_at MG-U74Bv2 // eukaryotic translation initiation factor 3, subunit 7 (zeta) Curated Ortholog /// 99101_at MG-U74Av2 // eukaryotic translation initiation factor 3, subunit 7 (zeta) Curated Ortholog /// 1416100_at MOE430A // eukaryotic translation initiation factor 3, subunit 7 (zeta) Curated Ortholog /// Z31134_s_at Mu11KsubB // eukaryotic translation initiation factor 3, subunit 7 (zeta) Curated Ortholog" chr22q12.3 // 33521476-33523181 // - // 92 --- 200006_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_007262.1 "gb:NM_007262.1 /DEF=Homo sapiens RNA-binding protein regulatory subunit (DJ-1), mRNA. /FEA=mRNA /GEN=DJ-1 /PROD=RNA-binding protein regulatory subunit /DB_XREF=gi:6005748 /UG=Hs.10958 RNA-binding protein regulatory subunit /FL=gb:AF021819.1 gb:NM_007262.1 gb:D61380.1" g6005748 Hs.10958.0 --- RNA-binding protein regulatory subunit DJ-1 Chr:1p36.33-p36.12 Hs.10958 11315 O14805 /// Q99497 --- --- ENSG00000116288 --- NM_007262 // RNA-binding protein regulatory subunit 7265 // RAS protein signal transduction // predicted/computed 5737 // cytoplasm // experimental evidence /// 5634 // nucleus // experimental evidence --- --- --- --- --- Cytoplasmic // experimental evidence /// Nuclear // experimental evidence --- --- IPR002818 // Family of unknown function ThiJ/PfpI DJ-1_PfpI // DJ-1/PfpI family;6.1e-57 IPB002818 // ThiJ/PfpI family;3.8e-12 d1g2ia_ // c.23.16.2 // Intracellular protease ;7.62e-37 --- --- 2460318 // RNA-binding protein regulatory subunit [Homo sapiens];e-100 /// 6005749 // RNA-binding protein regulatory subunit [Homo sapiens];e-102 O14805 // Gene-TRE:BK215D11.1 RNA-BINDING PROTEIN REGULATORY SUBUNIT (UNKNOWN) (PROTEIN FOR MGC:5243). length=189;1e-101 /// O88767 // Gene-TRE:CAP1 CAP1 PROTEIN. length=189;1e-94 /// Q99LX0 // SIMILAR TO DJ-1 PROTEIN. length=189;3e-93 /// Q99497 // Gene-TRE:DJ-1 DJ-1 PROTEIN. length=189;1e-102 /// O88306 // Gene-TRE:DJ1 Gene-TRE:DJ-1 DJ-1. length=173;7e-85 AJ007291_at RG-U34A // 84.67% fertility protein SP22 Putative Ortholog /// 1368653_a_at RAE230A // 84.67% fertility protein SP22 Putative Ortholog /// AJ007291_g_at RG-U34A // 84.67% fertility protein SP22 Putative Ortholog /// 95491_at MG-U74Av2 // RNA binding protein regulatory subunit Curated Ortholog /// 1416526_a_at MOE430A // RNA binding protein regulatory subunit Curated Ortholog /// w45916_s_at Mu11KsubB // RNA binding protein regulatory subunit Curated Ortholog /// 1456194_a_at MOE430A // RNA binding protein regulatory subunit Curated Ortholog chr1p36.23 // 7846665-7854225 // + // 100 Hs.10958 // 4 // NM_007262 // RNA-binding protein regulatory subunit // chr1 // 7831754-7854257 // + 200007_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_003134.1 "gb:NM_003134.1 /DEF=Homo sapiens signal recognition particle 14kD (homologous Alu RNA-binding protein) (SRP14), mRNA. /FEA=mRNA /GEN=SRP14 /PROD=signal recognition particle 14kD (homologous AluRNA-binding protein) /DB_XREF=gi:4507210 /UG=Hs.180394 signal recognition particle 14kD (homologous Alu RNA-binding protein) /FL=gb:NM_003134.1 gb:U07857.1" g4507210 Hs.180394.0 --- signal recognition particle 14kDa (homologous Alu RNA binding protein) SRP14 Chr:15q22 Hs.180394 6727 AAH35495 /// P37108 /// Q96Q14 --- --- ENSG00000140319 --- NM_003134 // signal recognition particle 14kDa (homologous Alu RNA binding protein) 6613 // co-translational membrane targeting // predicted/computed 5737 // cytoplasm // experimental evidence /// 5786 // signal recognition particle // predicted/computed 8312 // 7S RNA binding // experimental evidence /// 3723 // RNA binding // predicted/computed RNA-binding protein // experimental evidence Protein translocation // predicted/computed RNA-associated // experimental evidence --- Cytoplasmic // predicted/computed --- --- "IPR000104 // Antifreeze protein, type I /// IPR003210 // Signal recognition particle, 14 kDa protein" SRP14 // Signal recognition particle 14kD protein;4.1e-61 PR00833 // Pollen allergen Poa pI signature;0.0025 "d1914__ // d.49.1.1 // Signal recognition particle alu RNA binding heterodimer, SRP9/14 ;4.56e-49" --- --- 4507211 // signal recognition particle 14kDa (homologous Alu RNA binding protein); signal recognition particle 14kD (homologous Alu RNA-binding protein); signal recognition particle 14kD (homologous Alu RNA binding protein) [Homo sapiens];5e-70 /// 1082198 // Alu RNA-binding protein - human;2e-69 SR14_MOUSE // Gene:SRP14 Signal recognition particle 14 kDa protein (SRP14). length=110;1e-51 /// SR14_HUMAN // Gene:SRP14 SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN (SRP14) (18 KDA ALU RNA BINDING PROTEIN). length=136;2e-70 /// Q96Q14 // Gene-TRE:SRP14 SIGNAL RECOGNITION PARTICLE 14KD. length=136;7e-70 1455939_x_at MOE430A // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog /// 162477_r_at MG-U74Av2 // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog /// 1454615_x_at MOE430A // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog /// 101519_at MG-U74Av2 // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog /// M29264_f_at Mu11KsubA // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog /// 1418567_a_at MOE430A // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog /// 1418568_x_at MOE430A // signal recognition particle 14 kDa (homologous Alu RNA binding protein) Curated Ortholog --- --- 200008_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank D13988.1 "gb:D13988.1 /DEF=Human rab GDI mRNA, complete cds. /FEA=mRNA /PROD=human rab GDI /DB_XREF=gi:285974 /UG=Hs.56845 GDP dissociation inhibitor 2 /FL=gb:BC005145.1 gb:D13988.1 gb:NM_001494.2" g285974 Hs.56845.0 "1500074334 (1 transcript, 1 gene cluster)" GDP dissociation inhibitor 2 GDI2 Chr:10p15 Hs.56845 2665 P50395 /// Q8TB95 --- --- ENSG00000057608 --- NM_001494 // GDP dissociation inhibitor 2 6899 // non-selective vesicle transport // predicted/computed --- 5097 // RAB GTPase activator // extended:Unknown; GDI; 0 /// 5093 // RAB GDP-dissociation inhibitor // predicted/computed Inhibitor or repressor // experimental evidence --- --- --- --- --- --- IPR002005 // Rab GTPase activator /// IPR000806 // Rab GDI protein GDI // GDP dissociation inhibitor;0 IPB000172 // Glucose-methanol-choline (GMC) oxidoreductase;0.0013 "d1d5ta2 // d.16.1.6 // Guanine nucleotide dissosiation inhibitor, GDI ;3.23e-45 /// d1d5ta1 // c.3.1.3 // Guanine nucleotide dissosiation inhibitor, GDI ;1.11e-138" --- EC:5.4.99.9 // GLF_MYCPN UDP-GALACTOPYRANOSE MUTASE (EC 5.4.99.9).;6.81e-37 "6598323 // GDP dissociation inhibitor 2; rab GDP-dissociation inhibitor, beta [Homo sapiens];0.0 /// 285975 // human rab GDI [Homo sapiens];0.0" Q96CX5 // HYPOTHETICAL 50.5 KDA PROTEIN. length=447;0 /// Q91Z41 // HYPOTHETICAL 10.5 KDA PROTEIN (FRAGMENT). length=93;1e-34 /// GDIC_MOUSE // SW:Q9D8M9 Gene:GDI3 RAB GDP DISSOCIATION INHIBITOR BETA-2 (RAB GDI BETA-2) (GDI-3). length=445;0 /// Q9UQM6 // RAB GDP DISSOCIATION INHIBITOR BETA (FRAGMENT). length=359;0 /// Q9VLB7 // Gene-TRE:GDI Gene-TRE:CG4422 GDI PROTEIN. length=443;1e-174 /// O43928 // GDP DISSOCIATION INHIBITOR BETA. length=445;0 /// GDIA_MOUSE // SW:Q91Y71 Gene:GDI1 Gene:RABGDIA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (GDI-1). length=447;0 /// GDIB_HUMAN // SW:O43928 SW:Q9UQM6 Gene:GDI2 Gene:RABGDIB Rab GDP dissociation inhibitor beta (Rab GDI beta) (GDI-2). length=445;0 /// Q8VHM3 // GUANOSINE DIPHOSPHATE DISSOCIATION INHIBITOR 1. length=447;0 /// Q9R274 // RAB GDP DISSOCIATION INHIBITOR ALPHA (FRAGMENT). length=359;0 /// Q91Y71 // RAB GDP DISSOCIATION INHIBITOR ALPHA. length=447;0 /// GDIA_RAT // SW:Q9R274 Gene:GDI1 Gene:RABGDIA RAB GDP DISSOCIATION INHIBITOR ALPHA (RAB GDI ALPHA) (GDI-1). length=447;0 /// GDIB_RAT // Gene:GDI2 Gene:RABGDIB RAB GDP DISSOCIATION INHIBITOR BETA (RAB GDI BETA) (GDI-2). length=445;0 /// GDIA_HUMAN // SW:P50394 Gene:GDI1 Gene:RABGDIA Gene:XAP4 Gene:OPHN2 Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (GDI-1) (XAP-4) (Oligophrenin 2). length=447;0 /// GDIB_MOUSE // Gene:GDI2 Gene:RABGDIB RAB GDP DISSOCIATION INHIBITOR BETA (RAB GDI BETA) (GDI-2). length=445;0 1398822_at RAE230A // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// 1367460_at RAE230A // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// rc_AI105149_at RG-U34C // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// X74401_at RG-U34A // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// Msa.3107.0_i_at Mu11KsubB // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog /// Msa.3107.0_f_at Mu11KsubB // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog /// 94642_at MG-U74Av2 // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog /// 1421742_at MOE430A // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog chr10p15.1 // 5772361-5774634 // - // 100 Hs.56845 // 7 // NM_001494 // GDP dissociation inhibitor 2 // chr10 // 5771475-5819663 // - 200009_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001494.2 "gb:NM_001494.2 /DEF=Homo sapiens GDP dissociation inhibitor 2 (GDI2), mRNA. /FEA=mRNA /GEN=GDI2 /PROD=GDP dissociation inhibitor 2 /DB_XREF=gi:6598322 /UG=Hs.56845 GDP dissociation inhibitor 2 /FL=gb:BC005145.1 gb:D13988.1 gb:NM_001494.2" g6598322 Hs.56845.0 --- GDP dissociation inhibitor 2 GDI2 Chr:10p15 Hs.56845 2665 P50395 /// Q8TB95 --- --- ENSG00000057608 --- NM_001494 // GDP dissociation inhibitor 2 6899 // non-selective vesicle transport // predicted/computed --- 5097 // RAB GTPase activator // extended:Unknown; GDI; 0 /// 5093 // RAB GDP-dissociation inhibitor // predicted/computed Inhibitor or repressor // experimental evidence --- --- --- --- --- --- IPR002005 // Rab GTPase activator /// IPR000806 // Rab GDI protein GDI // GDP dissociation inhibitor;0 IPB000172 // Glucose-methanol-choline (GMC) oxidoreductase;0.0013 "d1d5ta2 // d.16.1.6 // Guanine nucleotide dissosiation inhibitor, GDI ;3.23e-45 /// d1d5ta1 // c.3.1.3 // Guanine nucleotide dissosiation inhibitor, GDI ;1.11e-138" --- EC:5.4.99.9 // GLF_MYCPN UDP-GALACTOPYRANOSE MUTASE (EC 5.4.99.9).;6.81e-37 "6598323 // GDP dissociation inhibitor 2; rab GDP-dissociation inhibitor, beta [Homo sapiens];0.0 /// 285975 // human rab GDI [Homo sapiens];0.0" Q91Z41 // HYPOTHETICAL 10.5 KDA PROTEIN (FRAGMENT). length=93;2e-34 /// Q96CX5 // HYPOTHETICAL 50.5 KDA PROTEIN. length=447;0 /// GDIC_MOUSE // SW:Q9D8M9 Gene:GDI3 RAB GDP DISSOCIATION INHIBITOR BETA-2 (RAB GDI BETA-2) (GDI-3). length=445;0 /// Q9UQM6 // RAB GDP DISSOCIATION INHIBITOR BETA (FRAGMENT). length=359;0 /// Q9VLB7 // Gene-TRE:GDI Gene-TRE:CG4422 GDI PROTEIN. length=443;1e-175 /// O43928 // GDP DISSOCIATION INHIBITOR BETA. length=445;0 /// GDIA_MOUSE // SW:Q91Y71 Gene:GDI1 Gene:RABGDIA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (GDI-1). length=447;0 /// GDIB_HUMAN // SW:O43928 SW:Q9UQM6 Gene:GDI2 Gene:RABGDIB Rab GDP dissociation inhibitor beta (Rab GDI beta) (GDI-2). length=445;0 /// Q8VHM3 // GUANOSINE DIPHOSPHATE DISSOCIATION INHIBITOR 1. length=447;0 /// Q9R274 // RAB GDP DISSOCIATION INHIBITOR ALPHA (FRAGMENT). length=359;0 /// Q91Y71 // RAB GDP DISSOCIATION INHIBITOR ALPHA. length=447;0 /// GDIA_RAT // SW:Q9R274 Gene:GDI1 Gene:RABGDIA RAB GDP DISSOCIATION INHIBITOR ALPHA (RAB GDI ALPHA) (GDI-1). length=447;0 /// GDIB_RAT // Gene:GDI2 Gene:RABGDIB RAB GDP DISSOCIATION INHIBITOR BETA (RAB GDI BETA) (GDI-2). length=445;0 /// GDIA_HUMAN // SW:P50394 Gene:GDI1 Gene:RABGDIA Gene:XAP4 Gene:OPHN2 Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (GDI-1) (XAP-4) (Oligophrenin 2). length=447;0 /// GDIB_MOUSE // Gene:GDI2 Gene:RABGDIB RAB GDP DISSOCIATION INHIBITOR BETA (RAB GDI BETA) (GDI-2). length=445;0 1398822_at RAE230A // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// 1367460_at RAE230A // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// rc_AI105149_at RG-U34C // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// X74401_at RG-U34A // 88.86% guanosine diphosphate dissociation inhibitor 3 Putative Ortholog /// Msa.3107.0_i_at Mu11KsubB // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog /// Msa.3107.0_f_at Mu11KsubB // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog /// 94642_at MG-U74Av2 // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog /// 1421742_at MOE430A // guanosine diphosphate (GDP) dissociation inhibitor 2 Curated Ortholog chr10p15.1 // 5771517-5772075 // - // 99 Hs.56845 // 5 // NM_001494 // GDP dissociation inhibitor 2 // chr10 // 5771475-5819663 // - 200010_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000975.1 "gb:NM_000975.1 /DEF=Homo sapiens ribosomal protein L11 (RPL11), mRNA. /FEA=mRNA /GEN=RPL11 /PROD=ribosomal protein L11 /DB_XREF=gi:4506594 /UG=Hs.179943 ribosomal protein L11 /FL=gb:L05092.1 gb:NM_000975.1" g4506594 Hs.179943.0 --- ribosomal protein L11 RPL11 Chr:1p36.1-p35 Hs.388664 6135 P39026 /// Q8TDH2 /// Q9Y674 --- --- ENSG00000142676 --- NM_000975 // ribosomal protein L11 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // not recorded /// Ribosomal subunit // not recorded Protein synthesis // not recorded Ribosome-associated // not recorded General cellular role // not recorded --- --- --- IPR002132 // Ribosomal protein L5 Ribosomal_L5_C // ribosomal L5P family C-terminus;8.9e-60 /// Ribosomal_L5 // Ribosomal protein L5;6e-23 IPB002132 // Ribosomal protein L5;4.7e-44 d1jj2d_ // d.77.1.1 // Ribosomal protein L5 ;6.66e-61 --- --- 22001905 // 60S ribosomal protein L11;8e-99 /// 13385408 // RIKEN cDNA 2010203J19 [Mus musculus];e-99 Q8VC94 // HYPOTHETICAL 19.0 KDA PROTEIN. length=167;2e-91 /// RL11_MOUSE // Gene:RPL11 60S ribosomal protein L11. length=177;1e-96 /// Q9Y674 // RIBOSOMAL PROTEIN L11. length=177;2e-96 /// RL11_HUMAN // SW:P25121 Gene:RPL11 60S RIBOSOMAL PROTEIN L11. length=177;4e-98 /// RL11_HUMAN // SW:P25121 Gene:RPL11 60S RIBOSOMAL PROTEIN L11. length=177;2e-97 1417615_a_at MOE430A // RIKEN cDNA 2010203J19 gene Curated Ortholog chr1p36.11 // 23090094-23092257 // + // 98 Hs.388664 // 5 // NM_000975 // ribosomal protein L11 // chr1 // 23090083-23093901 // + 200011_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001659.1 "gb:NM_001659.1 /DEF=Homo sapiens ADP-ribosylation factor 3 (ARF3), mRNA. /FEA=mRNA /GEN=ARF3 /PROD=ADP-ribosylation factor 3 /DB_XREF=gi:4502202 /UG=Hs.119177 ADP-ribosylation factor 3 /FL=gb:M74491.1 gb:NM_001659.1" g4502202 Hs.119177.0 "1500074335 (1 transcript, 1 gene cluster)" ADP-ribosylation factor 3 ARF3 Chr:12q13 Hs.119177 377 AAH28402 /// AAM12596 /// P16587 --- --- ENSG00000134287 --- NM_001659 // ADP-ribosylation factor 3 6902 // non-selective vesicle assembly // predicted/computed --- 3924 // GTPase // experimental evidence /// 5525 // GTP binding // predicted/computed GTP-binding protein/GTPase // not recorded /// Hydrolase // not recorded /// Activator // not recorded --- --- --- --- --- --- IPR000251 // ADP-ribosylation factor family /// IPR005225 // Small GTP-binding protein domain /// IPR001806 // Ras GTPase superfamily /// IPR002046 // GTP-binding protein SAR1 arf // ADP-ribosylation factor family;6.9e-127 PR00449 // Transforming protein P21 RAS signature;0.0022 d1rrga_ // c.37.1.8 // ADP-ribosylation factor ;1.72e-57 --- --- 4502203 // ADP-ribosylation factor 3 [Homo sapiens];e-101 /// 4502201 // ADP-ribosylation factor 1 [Homo sapiens];2e-97 ARF3_DROME // SW:Q9V7B0 Gene:ARF51F Gene:ARF3 Gene:CG8156 ADP-ribosylation factor 3. length=174;4e-68 /// ARF1_HUMAN // SW:P10947 Gene:ARF1 ADP-ribosylation factor 1. length=180;3e-97 /// ARF1_ARATH // Gene:ARF1 Gene:AT2G47170 Gene:T08I13.1 ADP-RIBOSYLATION FACTOR 1. length=180;2e-86 /// Q9DD04 // Gene-TRE:ARF4 ADP-RIBOSYLATION FACTOR 4. length=181;1e-79 /// ARF2_ARATH // SW:Q9SGY6 Gene:AT1G10630 Gene:F20B24.7 Gene:AT1G70490 Gene:F24J13.6 ADP-RIBOSYLATION FACTOR 1-LIKE. length=180;1e-85 /// Q9V499 // Gene-TRE:ARF102F ARF102F PROTEIN. length=180;2e-80 /// Q9M1P5 // Gene-TRE:T17J13.250 ADP-RIBOSYLATION FACTOR-LIKE PROTEIN (AT3G62290/T17J13_250). length=181;9e-88 /// Q9FZ18 // Gene-TRE:T6A9.12 T6A9.12 PROTEIN. length=186;2e-41 /// ARF4_MOUSE // Gene:ARF4 ADP-RIBOSYLATION FACTOR 4. length=179;1e-79 /// ARF3_CAEEL // Gene:ARL-6 Gene:F45E4.1 ADP-RIBOSYLATION FACTOR 3. length=178;2e-55 /// ARF6_HUMAN // Gene:ARF6 ADP-ribosylation factor 6. length=174;1e-69 /// ARF1_HUMAN // SW:P10947 Gene:ARF1 ADP-ribosylation factor 1. length=180;6e-97 /// ARL1_YEAST // Gene:ARL1 Gene:ARF3 Gene:YBR164C Gene:YBR1216 ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1. length=183;3e-55 /// Q9D7H9 // Gene-TRE:2310008D22RIK 2310008D22RIK PROTEIN. length=181;3e-57 /// ARF4_MOUSE // Gene:ARF4 ADP-RIBOSYLATION FACTOR 4. length=179;4e-79 /// Q9VSG8 // Gene-TRE:CG7197 CG7197 PROTEIN. length=179;9e-49 /// O45099 // Gene-TRE:F57H12.1 F57H12.1 PROTEIN. length=180;2e-83 /// ARF3_HUMAN // Gene:ARF3 ADP-ribosylation factor 3. length=180;1e-101 /// ARF3_ARATH // Gene:ARF3 Gene:AT2G24765 Gene:F27A10.8 Gene:F27C12.31 ADP-ribosylation factor 3. length=181;1e-59 /// ARF3_HUMAN // Gene:ARF3 ADP-ribosylation factor 3. length=180;1e-100 /// Q9VNQ2 // Gene-TRE:ARF79F Gene-TRE:LARF1 ARF79F PROTEIN (ADP-RIBOSYLATION FACTOR 1). length=182;1e-95 /// ARF6_HUMAN // Gene:ARF6 ADP-ribosylation factor 6. length=174;3e-70 /// ARF2_MOUSE // SW:P10947 Gene:ARF2 ADP-RIBOSYLATION FACTOR 2. length=181;6e-96 /// ARL1_MOUSE // Gene:ARL1 Gene:ARF7 ADP-ribosylation factor-like protein 1. length=181;7e-57 /// Q9CXX3 // Gene-TRE:ARF4 ADP-RIBOSYLATION FACTOR 4. length=180;2e-79 /// ARF1_YEAST // Gene:ARF1 Gene:YDL192W Gene:D1244 ADP-RIBOSYLATION FACTOR 1. length=180;4e-78 /// Q9V7B0 // Gene-TRE:ARF51F Gene-TRE:CG8156 ARF51F PROTEIN. length=175;4e-68 /// ARL1_MOUSE // Gene:ARL1 Gene:ARF7 ADP-ribosylation factor-like protein 1. length=181;3e-57 /// ARF1_HUMAN // SW:P10947 Gene:ARF1 ADP-ribosylation factor 1. length=180;1e-97 /// ARF1_DROME // SW:Q9VNQ2 Gene:ARF79F Gene:ARF1 Gene:LARF1 Gene:CG8385 ADP-ribosylation factor 1. length=181;5e-95 /// ARF2_MOUSE // SW:P10947 Gene:ARF2 ADP-RIBOSYLATION FACTOR 2. length=181;2e-95 /// Q9LIK1 // Gene-TRE:AT3G22950 SIMILARITY TO ADP-RIBOSYLATION FACTOR (PUTATIVE ADP-RIBOSYLATION FACTOR). length=183;4e-52 /// Q9U2S4 // Gene-TRE:Y116A8C.12 Y116A8C.12 PROTEIN. length=175;3e-66 /// ARF1_CAEEL // Gene:ARF-1 Gene:B0336.2 ADP-RIBOSYLATION FACTOR 1. length=180;7e-94 /// ARF2_DROME // SW:Q9V499 Gene:ARF102F Gene:ARF2 Gene:CG11027 ADP-RIBOSYLATION FACTOR 2. length=179;6e-80 /// ARL1_HUMAN // SW:P80417 Gene:ARL1 ADP-ribosylation factor-like protein 1. length=181;6e-57 /// ARF4_HUMAN // SW:P21371 Gene:ARF4 ADP-ribosylation factor 4. length=179;5e-79 /// ARF6_HUMAN // Gene:ARF6 ADP-ribosylation factor 6. length=174;2e-69 /// Q91VR9 // SIMILAR TO ADP-RIBOSYLATION FACTOR 2. length=181;7e-94 L12382_at RG-U34A // 88.92% ADP-ribosylation factor 3 Putative Ortholog /// 1387447_at RAE230A // 88.92% ADP-ribosylation factor 3 Putative Ortholog /// 1437331_a_at MOE430A // ADP-ribosylation factor 3 Curated Ortholog /// 1421789_s_at MOE430A // ADP-ribosylation factor 3 Curated Ortholog /// 93700_at MG-U74Av2 // ADP-ribosylation factor 3 Curated Ortholog /// Msa.3060.0_s_at Mu11KsubB // ADP-ribosylation factor 3 Curated Ortholog /// 96587_at MG-U74Av2 // ADP-ribosylation factor 3 Curated Ortholog /// 1423973_a_at MOE430A // ADP-ribosylation factor 3 Curated Ortholog chr12q13.12 // 49556600-49557134 // - // 100 Hs.119177 // 5 // NM_001659 // ADP-ribosylation factor 3 // chr12 // 49556548-49561530 // - 200012_x_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000982.1 "gb:NM_000982.1 /DEF=Homo sapiens ribosomal protein L21 (gene or pseudogene) (RPL21), mRNA. /FEA=mRNA /GEN=RPL21 /PROD=ribosomal protein L21 (gene or pseudogene) /DB_XREF=gi:4506610 /UG=Hs.184108 ribosomal protein L21 /FL=gb:BC001603.1 gb:NM_000982.1 gb:U14967.1 gb:U25789.1" g4506610 Hs.184108.0 "1500074336 (24 transcripts, 21 gene clusters)" ribosomal protein L21 RPL21 Chr:13q12.13 Hs.350077 6144 P46778 --- --- ENSG00000122516 /// ENSG00000122026 /// ENSG00000162767 /// ENSG00000138174 --- NM_000982 // ribosomal protein L21 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR001147 // Ribosomal protein L21e Ribosomal_L21e // Ribosomal protein L21e;2.7e-69 IPB001147 // Ribosomal protein L21E;2.5e-45 d1jj2p_ // b.34.5.1 // Ribosomal proteins L21e ;9.96e-31 --- --- "20891506 // similar to data source:MGD, source key:MGI:1278340, evidence:ISS~putative~ribosomal protein L21 [Mus musculus];2e-90 /// 18104948 // ribosomal protein L21; 60S ribosomal protein L21 [Homo sapiens];2e-90" Q9UDT4 // Gene-TRE:WUGSC:H_RG095A14.1 RIBOSOMAL PROTEIN L21. length=160;4e-86 /// RL21_HUMAN // SW:Q16699 Gene:RPL21 60S ribosomal protein L21. length=159;6e-86 /// Q9CQM8 // Gene-TRE:RPL21 Gene-TRE:8430440E03RIK RIBOSOMAL PROTEIN L21. length=160;1e-86 /// RL21_MOUSE // Gene:RPL21 60S RIBOSOMAL PROTEIN L21. length=159;4e-85 /// RL21_CAEEL // Gene:RPL-21 Gene:C14B9.7 60S ribosomal protein L21. length=160;2e-49 /// R21B_YEAST // Gene:RPL21B Gene:YPL079W Gene:LPF6W 60S ribosomal protein L21-B. length=160;3e-49 /// R21A_YEAST // Gene:RPL21A Gene:URP1 Gene:YBR191W Gene:YBR1401 60S RIBOSOMAL PROTEIN L21-A. length=160;2e-49 /// Q9V9M7 // Gene-TRE:CG12775 RIBOSOMAL PROTEIN L21. length=159;6e-62 /// RL21_RAT // Gene:RPL21 60S RIBOSOMAL PROTEIN L21. length=159;4e-85 "M27905_at RG-U34A // ribosomal protein L21 Curated Ortholog /// rc_AA849648_at RG-U34A // ribosomal protein L21 Curated Ortholog /// rc_AA849648_g_at RG-U34A // ribosomal protein L21 Curated Ortholog /// rc_AI231127_at RG-U34C // ESTs, Moderately similar to transforming growth factor, beta induced, 68 kDa [Mus musculus] [M.musculus] Curated Ortholog /// rc_AI070653_at RG-U34C // ribosomal protein L21 Curated Ortholog /// 1398764_at RAE230A // ribosomal protein L21 Curated Ortholog /// 1371913_at RAE230A // ESTs, Moderately similar to transforming growth factor, beta induced, 68 kDa [Mus musculus] [M.musculus] Curated Ortholog /// 1429077_x_at MOE430A // ribosomal protein L21 Curated Ortholog /// 96290_f_at MG-U74Av2 // ribosomal protein L21 Curated Ortholog /// 1423070_at MOE430A // ribosomal protein L21 Curated Ortholog /// U93863_s_at Mu11KsubA // ribosomal protein L21 Curated Ortholog /// 1455767_x_at MOE430A // ribosomal protein L21 Curated Ortholog /// 1459002_at MOE430B // ribosomal protein L21 Curated Ortholog /// 133729_at MG-U74Cv2 // ribosomal protein L21 Curated Ortholog" chr1q32.3 // 208068081-208068578 // - // 98 /// chr10q26.12 // 121357856-121358353 // - // 98 /// chr12q21.2 // 77396528-77397025 // + // 97 /// chr13q12.2 // 21807898-21810653 // + // 97 /// chr16p13.2 // 9349872-9350369 // - // 98 /// chr4q28.1 // 129013396-129013893 // - // 97 /// chr7p21.1 // 19686707-19687204 // + // 98 Hs.350077 // 4 // NM_000982 // ribosomal protein L21 // chr7 // 19686701-19687258 // + 200013_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000986.1 "gb:NM_000986.1 /DEF=Homo sapiens ribosomal protein L24 (RPL24), mRNA. /FEA=mRNA /GEN=RPL24 /PROD=ribosomal protein L24 /DB_XREF=gi:4506618 /UG=Hs.184582 ribosomal protein L24 /FL=gb:BC000690.1 gb:M94314.1 gb:NM_000986.1" g4506618 Hs.184582.0 --- ribosomal protein L24 RPL24 Chr:3q12 Hs.184582 6152 P38663 --- --- ENSG00000114391 --- NM_000986 // ribosomal protein L24 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR000988 // Ribosomal protein L24E Ribosomal_L24e // Ribosomal protein L24e;5.4e-50 IPB001380 // Ribosomal protein L13e;0.0022 --- --- --- 20977585 // 60S ribosomal protein L24 [Danio rerio];7e-76 /// 4506619 // ribosomal protein L24; 60S ribosomal protein L24; ribosomal protein L30 [Homo sapiens];4e-84 Q9VJY6 // Gene-TRE:CG9282 CG9282 PROTEIN. length=155;8e-55 /// RL24_HUMAN // Gene:RPL24 60S ribosomal protein L24 (L30). length=157;1e-85 /// RL24_HUMAN // Gene:RPL24 60S ribosomal protein L24 (L30). length=157;3e-85 /// RL24_HUMAN // Gene:RPL24 60S ribosomal protein L24 (L30). length=157;5e-85 /// Q9CS31 // Gene-TRE:0610008L05RIK 0610008L05RIK PROTEIN (FRAGMENT). length=67;3e-35 rc_AA859318_at RG-U34C // 89.73% ribosomal protein L24 Putative Ortholog /// 1396812_at RAE230B // 89.73% ribosomal protein L24 Putative Ortholog /// rc_AA817997_at RG-U34A // 89.73% ribosomal protein L24 Putative Ortholog /// rc_AA817997_g_at RG-U34A // 89.73% ribosomal protein L24 Putative Ortholog /// 1398854_at RAE230A // 89.73% ribosomal protein L24 Putative Ortholog /// 168684_i_at MG-U74Cv2 // ribosomal protein L24 Curated Ortholog /// w97389_at Mu11KsubB // ribosomal protein L24 Curated Ortholog /// 1447653_x_at MOE430A // ribosomal protein L24 Curated Ortholog /// 161127_i_at MG-U74Av2 // ribosomal protein L24 Curated Ortholog /// 1460201_a_at MOE430A // ribosomal protein L24 Curated Ortholog chr3q12.3 // 100831303-100835239 // - // 98 /// chr6p21.1 // 42920544-42920909 // - // 98 --- 200014_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004500.1 "gb:NM_004500.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein C (C1C2) (HNRPC), mRNA. /FEA=mRNA /GEN=HNRPC /PROD=heterogeneous nuclear ribonucleoprotein C(C1C2) /DB_XREF=gi:4758543 /UG=Hs.182447 heterogeneous nuclear ribonucleoprotein C (C1C2) /FL=gb:BC003394.1 gb:M16342.1 gb:NM_004500.1" g4758543 Hs.182447.0 "1500074337 (2 transcripts, 1 gene cluster)" heterogeneous nuclear ribonucleoprotein C (C1/C2) HNRPC Chr:14q11.1 Hs.406125 3183 P07910 --- --- ENSG00000092199 --- NM_004500 // heterogeneous nuclear ribonucleoprotein C isoform b /// NM_031314 // heterogeneous nuclear ribonucleoprotein C isoform a 6371 // mRNA splicing // predicted/computed 5634 // nucleus // predicted/computed 3723 // RNA binding // not recorded /// 8436 // heterogeneous nuclear ribonucleoprotein // not recorded /// 3676 // nucleic acid binding // extended:Unknown; rrm; 3.1e-16 RNA-binding protein // not recorded RNA processing/modification // predicted/computed /// RNA splicing // predicted/computed RNA-associated // not recorded --- Nuclear // predicted/computed --- --- IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;3.1e-16" --- --- --- --- "4758544 // heterogeneous nuclear ribonucleoprotein C, isoform b; nuclear ribonucleoprotein particle C1 protein; nuclear ribonucleoprotein particle C2 protein [Homo sapiens];e-162 /// 20455507 // Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 / hnRNP C2);e-169 /// 14110428 // heterogeneous nuclear ribonucleoprotein C, isoform a; nuclear ribonucleoprotein particle C1 protein; nuclear ribonucleoprotein particle C2 protein [Homo sapiens];e-170 /// 13097279 // heterogeneous nuclear ribonucleoprotein C (C1/C2) [Homo sapiens];e-161" Q96HK7 // HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C (C1/C2). length=306;1e-159 /// Q99KE2 // Gene-TRE:HNRPC HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C. length=292;1e-153 /// ROCL_HUMAN // Gene:dJ845O24.4 Heterogeneous nuclear ribonucleoprotein C-like (hnRNP core protein C- like). length=293;1e-146 /// Q96HM4 // HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C (C1/C2). length=293;1e-161 /// Q9CY83 // Gene-TRE:HNRPC Gene-TRE:HNRNPC HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C. length=293;1e-156 /// Q9CQT3 // Gene-TRE:HNRPC Gene-TRE:HNRNPC HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C. length=300;1e-154 /// ROC_MOUSE // SW:Q9CY83 SW:Q9CQT3 Gene:HNRPC Gene:HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 / hnRNP C2). length=313;1e-151 /// Q9BTS3 // HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C (C1/C2). length=293;1e-161 /// ROC_HUMAN // SW:P22628 SW:Q96IY5 SW:Q96HK7 SW:Q96HM4 SW:Q9BTS3 Gene:HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 / hnRNP C2). length=306;1e-159 /// Q96IY5 // SIMILAR TO HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C. length=306;1e-158 rc_AI233740_at RG-U34C // 83.89% aldose reductase-like protein Putative Ortholog /// 1370902_at RAE230A // 83.89% aldose reductase-like protein Putative Ortholog /// C80267_rc_f_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// aa543665_i_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// 1460240_a_at MOE430A // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// aa674148_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// 165278_r_at MG-U74Bv2 // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// 160199_at MG-U74Av2 // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// aa543665_f_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// 1418693_at MOE430A // heterogeneous nuclear ribonucleoprotein C Curated Ortholog /// C80478_rc_f_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein C Curated Ortholog chr14q11.2 // 15466029-15466354 // - // 100 /// chr2q32.2 // 189491913-189492238 // + // 99 Hs.406125 // 5 // NM_004500 // heterogeneous nuclear ribonucleoprotein C (C1/C2) // chr14 // 15465987-15524855 // - /// Hs.406125 // 5 // NM_031314 // heterogeneous nuclear ribonucleoprotein C (C1/C2) // chr14 // 15465987-15524855 // - 200015_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004404.1 "gb:NM_004404.1 /DEF=Homo sapiens neural precursor cell expressed, developmentally down-regulated 5 (NEDD5), mRNA. /FEA=mRNA /GEN=NEDD5 /PROD=neural precursor cell expressed, developmentallydown-regulated 5 /DB_XREF=gi:4758157 /UG=Hs.155595 neural precursor cell expressed, developmentally down-regulated 5 /FL=gb:D28540.1 gb:NM_004404.1 gb:D63878.1" g4758157 Hs.155595.0 "1500074338 (2 transcripts, 1 gene cluster)" "neural precursor cell expressed, developmentally down-regulated 5" NEDD5 Chr:2q37 Hs.155595 4735 AAH33559 /// Q15019 /// Q96CB0 --- --- ENSG00000168385 --- "NM_004404 // neural precursor cell expressed, developmentally down-regulated 5" --- --- --- --- --- --- --- --- --- --- IPR000038 // Cell division/GTP binding protein GTP_CDC // Cell division protein;7.3e-203 IPB000765 // GTP1/OBG family;0.00012 d1h65a_ // c.37.1.8 // Chloroplast protein translocon GTPase Toc34 ;3.99e-27 --- --- "4758158 // neural precursor cell expressed, developmentally down-regulated 5 [Homo sapiens];0.0 /// 15680208 // Similar to neural precursor cell expressed, developmentally down-regulated 5 [Homo sapiens];0.0" "SEP2_MOUSE // Gene:SEPT2 Gene:NEDD5 Gene:NEDD-5 SEPTIN 2 (NEDD5 PROTEIN). length=361;0 /// O95648 // HYPOTHETICAL 17.0 KDA PROTEIN. length=150;1e-56 /// Q9H5B2 // Gene-TRE:BA291L22.2 BA291L22.2 (SIMILAR TO CDC10 (CELL DIVISION CYCLE 10, S. CEREVISIAE, HOMOLOG)) (FRAGMENT). length=114;9e-31 /// Q96CB0 // SIMILAR TO NEURAL CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED 5. length=361;0 /// Q91Y81 // Gene-TRE:VESP11 VASCULAR ENDOTHELIAL CELL SPECIFIC PROTEIN 11. length=361;0 /// SEP5_MOUSE // Gene:SEPT5 Gene:PNUTL1 SEPTIN 5 (PEANUT-LIKE PROTEIN 1) (CELL DIVISION CONTROL RELATED PROTEIN 1) (CDCREL-1) (FRAGMENT). length=347;1e-119 /// SEP2_HUMAN // SW:Q14132 Gene:SEPT2 Gene:NEDD5 Gene:DIFF6 Gene:KIAA0158 Septin 2 (NEDD5 protein homolog). length=361;0" 1368984_at RAE230A // 89.77% septin 2 Putative Ortholog /// 1388389_at RAE230A // 89.77% septin 2 Putative Ortholog /// rc_AI179570_at RG-U34C // 89.77% septin 2 Putative Ortholog /// 1423472_at MOE430A // septin 2 Curated Ortholog /// 97543_at MG-U74Av2 // septin 2 Curated Ortholog /// 1423473_at MOE430A // septin 2 Curated Ortholog /// D49382_s_at Mu11KsubA // septin 2 Curated Ortholog chr2q37.3 // 239999937-240000365 // - // 100 "Hs.155595 // 3 // NM_004404 // neural precursor cell expressed, developmentally down-regulated 5 // chr2 // 239999886-240038648 // -" 200016_x_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_002136.1 "gb:NM_002136.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein A1 (HNRPA1), mRNA. /FEA=mRNA /GEN=HNRPA1 /PROD=heterogeneous nuclear ribonucleoprotein A1 /DB_XREF=gi:4504444 /UG=Hs.249495 heterogeneous nuclear ribonucleoprotein A1 /FL=gb:NM_002136.1" g4504444 Hs.249495.0 "1500074339 (16 transcripts, 11 gene clusters)" heterogeneous nuclear ribonucleoprotein A1 HNRPA1 Chr:12q13.1 Hs.376844 3178 AAH02355 /// AAH09600 /// AAH12158 /// AAH33714 /// P09651 /// Q9BSM5 --- --- ENSG00000135486 --- NM_002136 // heterogeneous nuclear ribonucleoprotein A1 isoform a /// NM_031157 // heterogeneous nuclear ribonucleoprotein A1 isoform b 6405 // RNA-nucleus export // predicted/computed /// 6397 // mRNA processing // predicted/computed 5737 // cytoplasm // experimental evidence /// 5654 // nucleoplasm // experimental evidence 3676 // nucleic acid binding // extended:Unknown; rrm; 7.2e-22 /// 3723 // RNA binding // experimental evidence /// 8436 // heterogeneous nuclear ribonucleoprotein // experimental evidence RNA-binding protein // experimental evidence Nuclear-cytoplasmic transport // predicted/computed /// RNA processing/modification // predicted/computed RNA-associated // experimental evidence --- Cytoplasmic // experimental evidence /// Nuclear // experimental evidence --- --- IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;6.8e-50" IPB002989 // Mycobacterial pentapeptide repeats;0.00079 /// IPB001285 // Synaptophysin/synaptoporin;0.0019 "d1ha1_1 // d.58.7.1 // Nuclear ribonucleoprotein A1, RNP A1, UP1 ;4.92e-26 /// d1ha1_1 // d.58.7.1 // Nuclear ribonucleoprotein A1, RNP A1, UP1 ;1.5e-25" --- --- "8393547 // heterogeneous nuclear ribonucleoprotein A1 [Rattus norvegicus];0.0 /// 133254 // Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1);0.0 /// 4504445 // heterogeneous nuclear ribonucleoprotein A1, isoform a; nuclear ribonucleoprotein particle A1 protein; helix-destabilizing protein; single-strand DNA-binding protein UP1; heterogeneous nuclear ribonucleoprotein core protein A1; heterogeneous nuclear ribonucleoprotein A1B protein; heterogeneous nuclear ribonucleoprotein B2 protein [Homo sapiens];0.0 /// 14043070 // heterogeneous nuclear ribonucleoprotein A1, isoform b; nuclear ribonucleoprotein particle A1 protein; helix-destabilizing protein; single-strand DNA-binding protein UP1; heterogeneous nuclear ribonucleoprotein core protein A1; heterogeneous nuclear ribonucleoprotein A1B protein; heterogeneous nuclear ribonucleoprotein B2 protein [Homo sapiens];0.0" "ROA2_MOUSE // Gene:HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP B1). length=341;1e-119 /// ROA1_RAT // Gene:HNRPA1 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 (HELIX-DESTABILIZING PROTEIN) (SINGLE-STRAND BINDING PROTEIN) (HNRNP CORE PROTEIN A1) (HDP). length=319;0 /// Q9BSM5 // HYPOTHETICAL 31.8 KDA PROTEIN (FRAGMENT). length=298;1e-179 /// Q9H4S1 // Gene-TRE:BA438F9.2 BA438F9.2 (NOVEL PROTEIN SIMILAR TO HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 (HNRPA1)) (FRAGMENT). length=70;4e-35 /// Q91ZR9 // Gene-TRE:HNRPA2B1 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A2/B1 (FRAGMENT). length=342;1e-119 /// ROA1_MACMU // Gene:HNRPA1 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 (HELIX-DESTABILIZING PROTEIN) (SINGLE-STRAND BINDING PROTEIN) (HNRNP CORE PROTEIN A1). length=319;0 /// Q9CRI0 // Gene-TRE:2410013L13RIK ES CELLS CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:2410013L13, FULL INSERT SEQUENCE (FRAGMENT). length=139;8e-66 /// ROA1_HUMAN // Gene:HNRPA1 Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1). length=371;0 /// ROA1_MOUSE // SW:P97312 Gene:HNRPA1 Gene:FLI-2 Gene:TIS Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed). length=319;0 /// O95024 // Gene-TRE:WUGSC:H_DJ1093O17.1 WUGSC:H_DJ1093O17.1 PROTEIN. length=317;1e-175" rc_AA965147_at RG-U34A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1387872_at RAE230A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// M12156_at RG-U34A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1375612_at RAE230A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1455305_x_at MOE430A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1430020_x_at MOE430A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 92724_at MG-U74Av2 // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// d86729_s_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1455740_at MOE430A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1430019_a_at MOE430A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1436549_a_at MOE430A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 97272_at MG-U74Av2 // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 1423531_a_at MOE430A // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog /// 100371_at MG-U74Av2 // heterogeneous nuclear ribonucleoprotein A1 Curated Ortholog chr12q13.13 // 54792000-54792514 // + // 100 /// chr16q12.2 // 55808766-55809283 // - // 98 /// chr18q12.1 // 29810731-29811251 // - // 98 /// chr2q33.1 // 200653575-200654096 // + // 99 /// chr8q23.3 // 115102972-115103488 // - // 98 Hs.376844 // 7 // NM_002136 // heterogeneous nuclear ribonucleoprotein A1 // chr12 // 54788001-54792544 // + /// Hs.376844 // 7 // NM_031157 // heterogeneous nuclear ribonucleoprotein A1 // chr12 // 54788001-54792544 // + 200017_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_002954.1 "gb:NM_002954.1 /DEF=Homo sapiens ribosomal protein S27a (RPS27A), mRNA. /FEA=mRNA /GEN=RPS27A /PROD=ribosomal protein S27a /DB_XREF=gi:4506712 /UG=Hs.3297 ribosomal protein S27a /FL=gb:BC001392.1 gb:BC005328.1 gb:NM_002954.1" g4506712 Hs.3297.0 --- ribosomal protein S27a RPS27A Chr:2p16 Hs.311640 6233 AAB21188 /// CAA44911 /// P02248 /// P14798 --- --- --- --- NM_002954 // ubiquitin and ribosomal protein S27a precursor --- --- --- --- --- --- --- --- Proteasome_Degradation --- IPR000626 // Ubiquitin domain /// IPR002906 // Ribosomal protein S27a Ribosomal_S27 // Ribosomal protein S27a;2.2e-32 /// ubiquitin // Ubiquitin family;1.3e-42 PR01475 // Parkin signature;8.4e-06 d1ubi__ // d.15.1.1 // Ubiquitin ;7.74e-33 --- --- 600539 // ubiquitin;6e-88 /// 4506713 // ubiquitin and ribosomal protein S27a precursor; ubiquitin carboxyl extension protein 80; 40S ribosomal protein S27a; ubiquitin; ubiquitin-CEP80 [Homo sapiens];6e-88 Q93725 // Gene-TRE:F45H11.2 F45H11.2 PROTEIN. length=77;5e-22 /// UBIQ_YEAST // Gene:UBI1 Gene:RPL40A Gene:YIL148W Gene:UBI2 Gene:RPL40B Gene:YKR094C) AND Gene:UBI3 Gene:RPS31 Gene:YLR167W Gene:L9470.14 Gene:UBI4 Gene:SCD2 Gene:YLL039C Ubiquitin. length=76;3e-36 /// RS37_YEAST // SW:P14800 Gene:UBI3 Gene:RPS31 Gene:YLR167W Gene:L9470.14 40S ribosomal protein S37 (CEP76) (YS24). length=76;6e-26 /// Q9BQ77 // RIBOSOMAL PROTEIN S27A. length=156;7e-89 /// R27A_HUMAN // SW:Q9BQ77 Gene:RPS27A Gene:UBA80 Gene:UBCEP1 40S ribosomal protein S27a. length=80;1e-44 /// UBIQ_CAEEL // Gene:UBQ-1 Gene:UBIA Gene:F25B5.4 Gene:UBQ-2 Gene:UBIB UBIQUITIN. length=76;2e-36 /// UBIQ_SOYBN // Ubiquitin. length=76;1e-35 /// Q24575 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 UBIQUITIN (FRAGMENT). length=76;4e-36 /// Q41965 // UBIQUITIN (FRAGMENT). length=68;6e-25 /// O65381 // Gene-TRE:F12F1.15 F12F1.15 PROTEIN. length=78;4e-19 /// UBIQ_HUMAN // SW:P02249 SW:P02250 SW:Q29120 SW:Q91887 SW:Q91888 Gene:UBA52 Gene:UBCEP2 Gene:UBB Gene:UBC Gene:UBA80 Gene:UBCEP1 Gene:RPS27A Ubiquitin. length=76;2e-37 /// Q03919 // Gene-TRE:RUB1 Gene-TRE:YDR139C HYPOTHETICAL 8.7 KDA PROTEIN. length=77;1e-17 /// UBIQ_DROME // SW:Q9VQX7 SW:Q9VKW6 Gene:RPL40 Gene:CG2960 Gene:RPS27A Gene:UBI-F80 Gene:UBI-F Gene:CG5271) AND Gene:UBI-P63E Gene:UBI-M Gene:CG11624 Ubiquitin. length=76;2e-37 /// Q9LDJ2 // F26F24.28 (F28C11.5). length=156;1e-71 /// Q9BX44 // Gene-TRE:BA92K2.2 BA92K2.2 (SIMILAR TO UBIQUITIN). length=156;2e-84 /// R27A_MOUSE // SW:Q9D2W3 Gene:RPS27A 40S ribosomal protein S27a. length=80;2e-44 /// Q8WYN8 // Gene-TRE:RPS27A RIBOSOMAL PROTEIN S27A (FRAGMENT). length=34;3e-12 /// Q41930 // POLYUBIQUITIN (FRAGMENT). length=38;1e-13 /// Q8WYN9 // Gene-TRE:RPS27A RIBOSOMAL PROTEIN S27A (FRAGMENT). length=121;6e-69 /// Q24577 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 UBIQUITIN (FRAGMENT). length=76;1e-36 /// UBIQ_HUMAN // SW:P02249 SW:P02250 SW:Q29120 SW:Q91887 SW:Q91888 Gene:UBA52 Gene:UBCEP2 Gene:UBB Gene:UBC Gene:UBA80 Gene:UBCEP1 Gene:RPS27A Ubiquitin. length=76;4e-37 /// P97621 // POLYUBIQUITIN (FRAGMENT). length=41;4e-17 /// Q07188 // Gene-TRE:UBI4 Gene-TRE:YLL039C UBIQUITIN. length=47;1e-18 /// Q43354 // UBIQUITINE (FRAGMENT). length=86;5e-31 /// R27A_DROME // SW:Q9VKW6 Gene:RPS27A Gene:UBI-M Gene:UB3-D Gene:UBI-F80 Gene:CG5271 40S RIBOSOMAL PROTEIN S27A. length=80;1e-35 /// Q42009 // UBIQUITIN (FRAGMENT). length=52;1e-15 /// Q24576 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 UBIQUITIN (FRAGMENT). length=75;7e-35 /// Q27927 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 UBIQUITIN (FRAGMENT). length=76;7e-37 /// R27A_MOUSE // SW:Q9D2W3 Gene:RPS27A 40S ribosomal protein S27a. length=80;6e-45 /// Q9VKW6 // Gene-TRE:RPS27A RPS27A PROTEIN. length=156;9e-80 /// UBIQ_HUMAN // SW:P02249 SW:P02250 SW:Q29120 SW:Q91887 SW:Q91888 Gene:UBA52 Gene:UBCEP2 Gene:UBB Gene:UBC Gene:UBA80 Gene:UBCEP1 Gene:RPS27A Ubiquitin. length=76;8e-38 /// NED8_HUMAN // Gene:NEDD8 Ubiquitin-like protein NEDD8. length=81;8e-21 1367624_at RAE230A // 89.58% activating transcription factor ATF-4 Putative Ortholog /// rc_AA891729_at RG-U34A // 89.58% ribosomal protein S27a Putative Ortholog /// rc_AI012335_at RG-U34B // 89.58% activating transcription factor ATF-4 Putative Ortholog /// 1367685_at RAE230A // 89.58% ribosomal protein S27a Putative Ortholog /// rc_AI179381_at RG-U34C // 89.58% activating transcription factor ATF-4 Putative Ortholog /// aa473182_f_at Mu11KsubA // ribosomal protein S27a Curated Ortholog /// 93030_at MG-U74Av2 // ribosomal protein S27a Curated Ortholog /// 1449196_a_at MOE430A // ribosomal protein S27a Curated Ortholog chr16q21 // 61175140-61175620 // - // 98 /// chr2p16.1 // 55646127-55648888 // + // 99 Hs.311640 // 2 // AK093614 // ribosomal protein S27a // chr2 // 55646008-55648929 // + 200018_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001017.1 "gb:NM_001017.1 /DEF=Homo sapiens ribosomal protein S13 (RPS13), mRNA. /FEA=mRNA /GEN=RPS13 /PROD=ribosomal protein S13 /DB_XREF=gi:4506684 /UG=Hs.165590 ribosomal protein S13 /FL=gb:BC000475.1 gb:L01124.1 gb:NM_001017.1" g4506684 Hs.165590.0 --- ribosomal protein S13 RPS13 Chr:11p15 Hs.165590 6207 Q02546 --- --- ENSG00000110700 --- NM_001017 // ribosomal protein S13 6412 // protein biosynthesis // predicted/computed 5843 // cytosolic small ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // not recorded /// Ribosomal subunit // not recorded Protein synthesis // not recorded Ribosome-associated // not recorded General cellular role // not recorded Cytoplasmic // not recorded --- --- IPR000589 // Ribosomal protein S15 Ribosomal_S15 // Ribosomal protein S15;3.3e-30 IPB000589 // Ribosomal protein S15;1.5e-26 d1a32__ // a.16.1.2 // Ribosomal protein S15 ;2.21e-08 --- --- 4506685 // ribosomal protein S13; 40S ribosomal protein S13 [Homo sapiens];3e-81 /// 1350933 // 40S RIBOSOMAL PROTEIN S13;6e-81 O81311 // Gene-TRE:F6N15.7 Gene-TRE:AT4G00100 F6N15.7 PROTEIN (PUTATIVE RIBOSOMAL PROTEIN S13). length=150;2e-62 /// Q93V69 // AT3G60770/T4C21_180. length=151;1e-64 /// RS13_DROME // SW:Q9VLN5 Gene:RPS13 Gene:RP17 Gene:M(2)32A Gene:CG13389 40S ribosomal protein S13. length=150;1e-73 /// RS13_HUMAN // SW:P19116 SW:Q29200 Gene:RPS13 40S ribosomal protein S13. length=150;3e-82 /// RS13_ARATH // Gene:RPS13 40S RIBOSOMAL PROTEIN S13 (FRAGMENT). length=150;1e-64 /// Q93WJ4 // AT3G60770/T4C21_180. length=151;5e-64 /// Q9LZY6 // Gene-TRE:T4C21_180 RIBOSOMAL PROTEIN S13-LIKE. length=150;7e-62 /// RS13_CAEEL // Gene:RPS-13 Gene:C16A3.9 40S ribosomal protein S13. length=150;2e-65 /// Q921R2 // SIMILAR TO RIBOSOMAL PROTEIN S13. length=140;1e-76 /// RS13_HUMAN // SW:P19116 SW:Q29200 Gene:RPS13 40S ribosomal protein S13. length=150;1e-81 /// Q9SLR4 // Gene-TRE:ATRPS13A Gene-TRE:F6N15.7 CYTOPLASMIC RIBOSOMAL PROTEIN S13 (AT4G00100/F6N15_7) (SIMILAR TO RIBOSOMAL PROTEIN S13). length=151;3e-65 /// Q9VLN5 // Gene-TRE:RPS13 RPS13 PROTEIN. length=151;3e-74 /// RS13_YEAST // Gene:RPS13 Gene:RPS13C Gene:YDR064W Gene:YD9609.18 Gene:D4252 40S RIBOSOMAL PROTEIN S13 (S27A) (YS15). length=150;2e-65 "rc_AI233114_at RG-U34C // 85.71% ESTs, Highly similar to S29510 ubiquinol--cytochrome-c reductase (EC 1.10.2.2) core protein II precursor - rat [R.norvegicus] Putative Ortholog /// rc_AI235358_at RG-U34A // 85.71% ESTs, Highly similar to S29510 ubiquinol--cytochrome-c reductase (EC 1.10.2.2) core protein II precursor - rat [R.norvegicus] Putative Ortholog /// 1382280_at RAE230B // 85.71% ESTs, Highly similar to S29510 ubiquinol--cytochrome-c reductase (EC 1.10.2.2) core protein II precursor - rat [R.norvegicus] Putative Ortholog /// rc_AI639224_at RG-U34A // 85.71% ribosomal protein S13 Putative Ortholog /// 1398872_at RAE230A // 85.71% ribosomal protein S13 Putative Ortholog /// rc_AI235358_at RT-U34 // 85.71% ESTs, Highly similar to S29510 ubiquinol--cytochrome-c reductase (EC 1.10.2.2) core protein II precursor - rat [R.norvegicus] Putative Ortholog /// 1373362_at RAE230A // 85.71% ESTs, Highly similar to S29510 ubiquinol--cytochrome-c reductase (EC 1.10.2.2) core protein II precursor - rat [R.norvegicus] Putative Ortholog /// Msa.22366.0_s_at Mu11KsubB // ribosomal protein S13 Curated Ortholog /// aa543724_f_at Mu11KsubA // ribosomal protein S13 Curated Ortholog /// 1415912_a_at MOE430A // ribosomal protein S13 Curated Ortholog /// 134043_at MG-U74Cv2 // ribosomal protein S13 Curated Ortholog /// 93027_r_at MG-U74Av2 // ribosomal protein S13 Curated Ortholog /// 1448142_x_at MOE430A // ribosomal protein S13 Curated Ortholog /// 1438794_x_at MOE430A // ribosomal protein S13 Curated Ortholog /// 1415913_at MOE430A // ribosomal protein S13 Curated Ortholog" chr11p15.1 // 18039735-18042955 // - // 100 Hs.165590 // 5 // NM_001017 // ribosomal protein S13 // chr11 // 18039699-18042981 // - 200019_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001997.1 "gb:NM_001997.1 /DEF=Homo sapiens Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 (FAU), mRNA. /FEA=mRNA /GEN=FAU /PROD=Finkel-Biskis-Reilly murine sarcoma virus(FBR-MuSV) ubiquitously expressed (fox derived); ribosomalprotein S30 /DB_XREF=gi:4503658 /UG=Hs.177415 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 /FL=gb:NM_001997.1" g4503658 Hs.177415.0 "1500074340 (2 transcripts, 1 gene cluster)" Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 FAU Chr:11q13 Hs.177415 2197 P35544 /// Q05472 /// Q9H5V4 --- --- ENSG00000149806 --- NM_001997 // ubiquitin-like protein fubi and ribosomal protein S30 precursor 6412 // protein biosynthesis // predicted/computed 5737 // cytoplasm // predicted/computed /// 5840 // ribosome // predicted/computed 5551 // ubiquitin // predicted/computed /// 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed Protein conjugation factor // predicted/computed /// RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed --- Cytoplasmic // predicted/computed --- --- IPR000626 // Ubiquitin domain ubiquitin // Ubiquitin family;2.1e-17 IPB000626 // Ubiquitin domain;2.4e-14 d1cmxb_ // d.15.1.1 // Ubiquitin ;7.59e-17 --- --- "1083824 // ubiquitin-like protein / ribosomal protein S30, cytosolic [validated] - rat;7e-69 /// 4503659 // ubiquitin-like protein fubi and ribosomal protein S30 precursor; FBR-MuSV-associated ubiquitously expressed gene; ubiquitin-like-S30 fusion protein; 40S ribosomal protein S30; ubiquitin-like protein fubi; FAU-encoded ubiquitin-like protein [Homo sapiens];7e-70" "UBIM_MOUSE // Gene:FAU UBIQUITIN-LIKE PROTEIN FUBI (MONOCLONAL NONSPECIFIC SUPPRESSOR FACTOR BETA) (MNSF-BETA). length=74;7e-34 /// RS30_HUMAN // SW:Q95261 Gene:FAU 40S RIBOSOMAL PROTEIN S30. length=59;6e-29 /// Q9JJ24 // Gene-TRE:FAU MONOCLONAL NON-SPECIFIC SUPPRESSOR FACTOR BETA (FINKEL-BISKIS-REILLY MURINE SARCOMA VIRUS (FBR-MUSV) UBIQUITOUSLY EXPRESSED) (FOX DERIVED). length=133;4e-69 /// Q91V99 // Gene-TRE:FAU FAU PROTEIN (FRAGMENT). length=137;3e-71 /// UBIM_RAT // Gene:FAU UBIQUITIN-LIKE PROTEIN FUBI. length=74;6e-35 /// UBIM_HUMAN // Gene:FAU UBIQUITIN-LIKE PROTEIN FUBI. length=74;2e-35 /// RS30_HUMAN // SW:Q95261 Gene:FAU 40S RIBOSOMAL PROTEIN S30. length=59;3e-28 /// Q9M0E4 // Gene-TRE:AT4G29390 RIBOSOMAL PROTEIN S30 HOMOLOG (40S RIBOSOMAL PROTEIN S30 HOMOLOG) (AT2G19750/F6F22.22). length=62;1e-20 /// RS30_HUMAN // SW:Q95261 Gene:FAU 40S RIBOSOMAL PROTEIN S30. length=59;2e-28 /// Q9H5V4 // CDNA: FLJ22986 FIS, CLONE KAT11742. length=133;1e-70 /// Q920W8 // Gene-TRE:FAU FAU PROTEIN (FRAGMENT). length=137;2e-70 /// RS30_ARATH // SW:O82203 SW:Q9M0E4 Gene:RPS30A Gene:AT2G19750 Gene:F6F22.22) AND Gene:RPS30B Gene:AT4G29390 Gene:F17A13.210) AND Gene:RPS30C Gene:AT5G56670 Gene:MIK19.12 40S ribosomal protein S30. length=62;1e-20" l33715_f_at Mu11KsubA // Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) Curated Ortholog /// Msa.1734.0_f_at Mu11KsubB // Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) Curated Ortholog /// 100141_at MG-U74Av2 // Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) Curated Ortholog /// 1417452_a_at MOE430A // Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) Curated Ortholog chr11q13.1 // 66569784-66570870 // - // 99 "Hs.177415 // 4 // NM_001997 // Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 // chr11 // 66569709-66571266 // - /// Hs.247879 // 1 // AF116606 // Homo sapiens cDNA FLJ35073 fis, clone PLACE6000630, mRNA sequence // chr11 // 66569709-66570885 // -" 200020_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_007375.1 "gb:NM_007375.1 /DEF=Homo sapiens TAR DNA binding protein (TARDBP), mRNA. /FEA=mRNA /GEN=TARDBP /PROD=TAR DNA binding protein /DB_XREF=gi:6678270 /UG=Hs.193989 TAR DNA binding protein /FL=gb:AL050265.1 gb:NM_007375.1 gb:U23731.1" g6678270 Hs.193989.0 --- TAR DNA binding protein TARDBP Chr:1p36.21 Hs.193989 23435 Q13148 --- --- ENSG00000120948 --- NM_007375 // TAR DNA binding protein 7067 // mitosis // predicted/computed /// 6366 // transcription from Pol II promoter // experimental evidence 5634 // nucleus // experimental evidence 3700 // transcription factor // experimental evidence /// 8017 // microtubule binding // experimental evidence /// 3676 // nucleic acid binding // extended:Unknown; rrm; 2.1e-14 DNA-binding protein // experimental evidence /// Inhibitor or repressor // not recorded Pol II transcription // experimental evidence DNA-associated (direct or indirect) // experimental evidence Pathogenic Invasion // not recorded Nuclear // experimental evidence --- --- IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;9e-25" IPB000258 // Bacterial ice-nucleation proteins octamer repeat;6.9e-05 --- --- --- 6678271 // TAR DNA binding protein; TAR DNA-binding protein-43 [Homo sapiens];0.0 /// 20342390 // similar to TAR DNA-binding protein-43 (TDP-43) [Mus musculus];0.0 TDBP_MOUSE // Gene:TARDBP Gene:TDP43 TAR DNA-binding protein-43 (TDP-43). length=414;0 /// TDBP_HUMAN // SW:Q96DJ0 Gene:TARDBP Gene:TDP43 TAR DNA-binding protein-43 (TDP-43). length=414;0 109393_at MG-U74Bv2 // 92.76% TAR DNA binding protein Putative Ortholog /// aa120443_s_at Mu11KsubA // 92.76% TAR DNA binding protein Putative Ortholog /// 160377_at MG-U74Av2 // 92.76% TAR DNA binding protein Putative Ortholog /// Msa.30828.0_s_at Mu11KsubB // 92.76% TAR DNA binding protein Putative Ortholog /// 168191_r_at MG-U74Cv2 // 92.76% TAR DNA binding protein Putative Ortholog /// 1455655_a_at MOE430A // 92.76% TAR DNA binding protein Putative Ortholog /// 1436318_at MOE430B // 92.76% TAR DNA binding protein Putative Ortholog /// aa000380_s_at Mu11KsubA // 92.76% TAR DNA binding protein Putative Ortholog /// 1423723_s_at MOE430A // 92.76% TAR DNA binding protein Putative Ortholog /// 1434419_s_at MOE430A // 92.76% TAR DNA binding protein Putative Ortholog chr1p36.22 // 10927196-10927672 // + // 100 Hs.193989 // 3 // NM_007375 // TAR DNA binding protein // chr1 // 10916322-10927746 // + 200021_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_005507.1 "gb:NM_005507.1 /DEF=Homo sapiens cofilin 1 (non-muscle) (CFL1), mRNA. /FEA=mRNA /GEN=CFL1 /PROD=cofilin 1 (non-muscle) /DB_XREF=gi:5031634 /UG=Hs.180370 cofilin 1 (non-muscle) /FL=gb:NM_005507.1" g5031634 Hs.180370.0 --- cofilin 1 (non-muscle) CFL1 Chr:11q13 Hs.180370 1072 P23528 --- --- ENSG00000172757 --- NM_005507 // cofilin 1 (non-muscle) 6913 // nucleocytoplasmic transport // not recorded /// 7266 // Rho protein signal transduction // experimental evidence /// 7012 // actin cytoskeleton reorganization // predicted/computed 5634 // nucleus // predicted/computed 3779 // actin binding // not recorded /// 3790 // actin modulating // not recorded Complex assembly protein // not recorded Nuclear-cytoplasmic transport // not recorded /// Cell structure // not recorded Actin-cytoskeleton associated // not recorded --- Cytoskeletal // not recorded G13_Signaling_Pathway --- "IPR002108 // Actin-binding, cofilin/tropomyosin type" cofilin_ADF // Cofilin/tropomyosin-type actin-binding pr;2.9e-55 IPB002108 // Cofilin/tropomyosin-type actin-binding protein;9.1e-43 d1ak7__ // d.109.1.2 // Destrin ;1.45e-68 --- --- "5031635 // cofilin 1 (non-muscle) [Homo sapiens];4e-90 /// 8393101 // cofilin 1; cofilin 1, non-muscle [Rattus norvegicus];1e-89" "COF2_HUMAN // Gene:CFL2 Cofilin, muscle isoform (Cofilin 2). length=166;1e-73 /// DEST_HUMAN // Gene:DSN Gene:DSTN Gene:ACTDP Destrin (Actin-depolymerizing factor) (ADF). length=165;1e-62 /// COF1_MOUSE // Gene:CFL1 Cofilin, non-muscle isoform. length=166;4e-90 /// COF1_HUMAN // SW:Q9UCA2 Gene:CFL1 Gene:CFL Cofilin, non-muscle isoform (18 kDa phosphoprotein) (P18). length=166;1e-90 /// COF2_MOUSE // Gene:CFL2 Cofilin, muscle isoform (Cofilin 2). length=166;3e-74 /// DEST_MOUSE // Gene:DSN Gene:DSTN Gene:SID23 Destrin (Actin-depolymerizing factor) (ADF). length=165;2e-63 /// COF1_RAT // Gene:CFL1 Cofilin, non-muscle isoform. length=166;7e-91" "1370184_at RAE230A // cofilin 1 Curated Ortholog /// 1371339_at RAE230A // cofilin 1 Curated Ortholog /// 1376196_a_at RAE230A // ESTs Curated Ortholog /// rc_AA800290_at RG-U34A // ESTs Curated Ortholog /// 1387871_at RAE230A // cofilin 1 Curated Ortholog /// rc_AI177598_f_at RG-U34C // cofilin 1 Curated Ortholog /// rc_AI105348_i_at RG-U34A // cofilin 1 Curated Ortholog /// rc_AI235500_at RG-U34C // cofilin 1 Curated Ortholog /// rc_AI105348_f_at RG-U34A // cofilin 1 Curated Ortholog /// 1386253_at RAE230A // ESTs Curated Ortholog /// rc_AA800290_g_at RG-U34A // ESTs Curated Ortholog /// rc_AI071206_at RG-U34C // ESTs Curated Ortholog /// rc_AA859335_at RG-U34C // cofilin 1 Curated Ortholog /// 1455138_x_at MOE430A // cofilin 1, non-muscle Curated Ortholog /// Msa.7.0_f_at Mu11KsubB // cofilin 1, non-muscle Curated Ortholog /// d00472_f_at Mu11KsubA // cofilin 1, non-muscle Curated Ortholog /// 99119_at MG-U74Av2 // cofilin 1, non-muscle Curated Ortholog /// 1436311_at MOE430B // hypothetical protein C330013N08 Curated Ortholog /// 1448346_at MOE430A // cofilin 1, non-muscle Curated Ortholog" chr11q13.1 // 67304042-67304452 // - // 100 Hs.180370 // 8 // NM_005507 // cofilin 1 (non-muscle) // chr11 // 67303916-67307239 // - 200022_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000979.1 "gb:NM_000979.1 /DEF=Homo sapiens ribosomal protein L18 (RPL18), mRNA. /FEA=mRNA /GEN=RPL18 /PROD=ribosomal protein L18 /DB_XREF=gi:4506606 /UG=Hs.75458 ribosomal protein L18 /FL=gb:BC000374.1 gb:L11566.1 gb:NM_000979.1" g4506606 Hs.75458.0 --- ribosomal protein L18 RPL18 Chr:19q13 Hs.405036 6141 Q07020 --- --- ENSG00000063177 --- NM_000979 // ribosomal protein L18 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR000039 // Ribosomal protein L18e Ribosomal_L18e // Eukaryotic ribosomal protein L18;1.3e-139 IPB000039 // Ribosomal protein L18e;9.8e-60 d1jj2n_ // c.12.1.1 // Ribosomal protein L18e ;5.89e-15 --- --- 18204442 // ribosomal protein L18 [Homo sapiens];e-103 /// 4506607 // ribosomal protein L18; 60S ribosomal protein L18 [Homo sapiens];e-103 RL18_RAT // Gene:RPL18 60S RIBOSOMAL PROTEIN L18. length=187;1e-101 /// Q940B0 // Gene-TRE:AT5G27850 PUTATIVE 60S RIBOSOMAL PROTEIN. length=187;6e-64 /// RL18_YEAST // Gene:RPL18A Gene:RP28A Gene:YOL120C Gene:RPL18B Gene:RP28B Gene:YNL301C OR Gene:N0425 60S RIBOSOMAL PROTEIN L18 (RP28). length=186;4e-53 /// Q9VS34 // Gene-TRE:CG8615 RIBOSOMAL PROTEIN L18. length=188;4e-71 /// RL18_HUMAN // SW:Q8WTZ6 Gene:RPL18 60S ribosomal protein L18. length=187;1e-104 /// Q8WTZ6 // RIBOSOMAL PROTEIN L18. length=188;1e-104 /// RL18_MOUSE // SW:Q9CQF1 SW:Q9D987 Gene:RPL18 60S ribosomal protein L18. length=187;1e-100 /// Q9CQF1 // Gene-TRE:RPL18 RIBOSOMAL PROTEIN L18. length=188;1e-101 /// Q9D987 // Gene-TRE:RPL18 RIBOSOMAL PROTEIN L18. length=188;1e-101 /// Q9M9W4 // Gene-TRE:F18C1.14 PUTATIVE 60S RIBOSOMAL PROTEIN L18 (AT3G05590/F18C1_14). length=187;2e-64 /// O45946 // Gene-TRE:Y45F10D.12 Y45F10D.12 PROTEIN. length=188;1e-66 /// O22254 // Gene-TRE:AT2G47570 60S RIBOSOMAL PROTEIN L18 (FRAGMENT). length=187;4e-58 /// RL18_ARATH // SW:Q9M9W4 Gene:RPL18 Gene:AT3G05590 Gene:F18C1.14 60S ribosomal protein L18. length=187;2e-64 M20156_at RG-U34A // 88.06% ribosomal protein L18 Putative Ortholog /// 1367623_at RAE230A // 88.06% ribosomal protein L18 Putative Ortholog /// L04128_r_at Mu11KsubA // ribosomal protein L18 Curated Ortholog /// L04128_f_at Mu11KsubA // ribosomal protein L18 Curated Ortholog /// 1450372_a_at MOE430A // ribosomal protein L18 Curated Ortholog /// 1437005_a_at MOE430A // ribosomal protein L18 Curated Ortholog /// 160476_f_at MG-U74Av2 // ribosomal protein L18 Curated Ortholog /// 1456447_at MOE430A // ribosomal protein L18 Curated Ortholog /// 1436699_x_at MOE430A // ribosomal protein L18 Curated Ortholog chr19q13.33 // 49487284-49489230 // - // 100 "Hs.378186 // 1 // AK091257 // Homo sapiens cDNA FLJ33938 fis, clone CTONG2017998, mRNA sequence // chr19 // 49486712-49490556 // - /// Hs.405036 // 6 // NM_000979 // ribosomal protein L18 // chr19 // 49486711-49490557 // -" 200023_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_003754.1 "gb:NM_003754.1 /DEF=Homo sapiens eukaryotic translation initiation factor 3, subunit 5 (epsilon, 47kD) (EIF3S5), mRNA. /FEA=mRNA /GEN=EIF3S5 /PROD=eukaryotic translation initiation factor 3,subunit 5 (epsilon, 47kD) /DB_XREF=gi:4503518 /UG=Hs.7811 eukaryotic translation initiation factor 3, subunit 5 (epsilon, 47kD) /FL=gb:BC000490.1 gb:U94855.1 gb:NM_003754.1" g4503518 Hs.7811.0 "1500074341 (2 transcripts, 1 gene cluster)" "eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa" EIF3S5 Chr:11p15.3 Hs.7811 8665 O00303 /// Q8N978 --- --- --- --- "NM_003754 // eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa" 6446 // regulation of translational initiation // predicted/computed 5852 // eukaryotic translation initiation factor 3 complex // predicted/computed 3743 // translation initiation factor // predicted/computed --- Protein synthesis // predicted/computed Protein synthesis factor // predicted/computed --- Cytoplasmic // predicted/computed Translation_Factors --- "IPR003640 // Mov34 family, subtype 2 /// IPR000104 // Antifreeze protein, type I /// IPR000555 // Mov34 family" Mov34 // Mov34/MPN/PAD-1 family;1.4e-41 IPB002896 // Herpesvirus glycoprotein D;0.0012 --- --- --- "12728890 // similar to eukaryotic translation initiation factor 3, subunit 5 (epsilon, 47kD) [Homo sapiens];0.0 /// 4503519 // eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; eukaryotic translation initiation factor 3, subunit 5 (epsilon, 47kD) [Homo sapiens];0.0" IF35_MOUSE // Gene:EIF3S5 Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f). length=361;0 /// Q8VH52 // TRANSLATION INITIATION FACTOR-3 SUBUNIT 5 (FRAGMENT). length=148;5e-77 /// IF35_HUMAN // Gene:EIF3S5 Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p47 subunit). length=357;0 "164444_r_at MG-U74Bv2 // eukaryotic translation initiation factor 3, subunit 5 (epsilon) Curated Ortholog /// 1427021_s_at MOE430A // eukaryotic translation initiation factor 3, subunit 5 (epsilon) Curated Ortholog /// Msa.4919.0_s_at Mu11KsubB // RIKEN cDNA 1110007H10 gene Curated Ortholog /// 1452285_a_at MOE430A // eukaryotic translation initiation factor 3, subunit 5 (epsilon) Curated Ortholog /// 160541_at MG-U74Av2 // eukaryotic translation initiation factor 3, subunit 5 (epsilon) Curated Ortholog /// 1424646_at MOE430A // RIKEN cDNA 1110007H10 gene Curated Ortholog /// 109136_at MG-U74Bv2 // RIKEN cDNA 1110007H10 gene Curated Ortholog" chr11p15.4 // 8476426-8478045 // + // 100 /// chr2p16.1 // 58665442-58665885 // + // 98 "Hs.334555 // 1 // AK027739 // Homo sapiens cDNA FLJ14833 fis, clone OVARC1001171, moderately similar to Homo sapiens translation initiation factor 3 47 kDa subunit mRNA, mRNA sequence // chr11 // 8474107-8478150 // + /// Hs.7811 // 5 // NM_003754 // eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa // chr11 // 8469327-8478148 // +" 200024_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001009.1 "gb:NM_001009.1 /DEF=Homo sapiens ribosomal protein S5 (RPS5), mRNA. /FEA=mRNA /GEN=RPS5 /PROD=ribosomal protein S5 /DB_XREF=gi:4506728 /UG=Hs.76194 ribosomal protein S5 /FL=gb:NM_001009.1 gb:U14970.1" g4506728 Hs.76194.0 --- ribosomal protein S5 RPS5 Chr:19q13.4 Hs.356019 6193 P46782 --- --- ENSG00000083845 --- NM_001009 // ribosomal protein S5 6412 // protein biosynthesis // predicted/computed 5843 // cytosolic small ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- "IPR005716 // Ribosomal protein S7, eukaryotic and archaeal form /// IPR000235 // Ribosomal protein S7" Ribosomal_S7 // Ribosomal protein S7p/S5e;9.2e-71 IPB000235 // Ribosomal protein S7;1.9e-33 d1rss__ // a.75.1.1 // Ribosomal protein S7 ;7.26e-37 --- --- 13904870 // ribosomal protein S5; 40S ribosomal protein S5 [Homo sapiens];e-112 /// 3717978 // 5S ribosomal protein [Mus musculus];e-111 RS5_MOUSE // SW:O08607 Gene:RPS5 40S RIBOSOMAL PROTEIN S5. length=204;1e-111 /// Q96BN0 // Gene-TRE:RPS5 RIBOSOMAL PROTEIN S5. length=204;1e-112 /// RS5_RAT // Gene:RPS5 40S RIBOSOMAL PROTEIN S5. length=204;1e-113 /// RS5_HUMAN // SW:Q96BN0 Gene:RPS5 40S ribosomal protein S5. length=204;1e-112 /// Q9SF05 // Gene-TRE:F26K24.23 PUTATIVE 40S RIBOSOMAL PROTEIN S5 (40S RIBOSOMAL PROTEIN S5- LIKE). length=207;2e-82 1373852_at RAE230A // 90.08% ESTs Putative Ortholog /// rc_AA859922_at RG-U34A // 90.08% ESTs Putative Ortholog /// 164610_f_at MG-U74Bv2 // ribosomal protein S5 Curated Ortholog /// u78085_s_at Mu11KsubA // ribosomal protein S5 Curated Ortholog /// 1416054_at MOE430A // ribosomal protein S5 Curated Ortholog /// 170320_at MG-U74Cv2 // ribosomal protein S5 Curated Ortholog /// 99336_at MG-U74Av2 // ribosomal protein S5 Curated Ortholog chr19q13.43 // 59358348-59360099 // + // 99 Hs.356019 // 6 // NM_001009 // ribosomal protein S5 // chr19 // 59352625-59360142 // + 200025_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000988.1 "gb:NM_000988.1 /DEF=Homo sapiens ribosomal protein L27 (RPL27), mRNA. /FEA=mRNA /GEN=RPL27 /PROD=ribosomal protein L27 /DB_XREF=gi:4506622 /UG=Hs.111611 ribosomal protein L27 /FL=gb:BC002588.1 gb:L05094.1 gb:L19527.1 gb:NM_000988.1" g4506622 Hs.111611.0 "1500074342 (3 transcripts, 1 gene cluster)" ribosomal protein L27 RPL27 Chr:17q21.1-q21.2 Hs.402678 6155 AAA93226 /// P08526 --- --- ENSG00000131469 --- NM_000988 // ribosomal protein L27 --- --- --- --- --- --- --- --- --- --- IPR001141 // Ribosomal protein L27e /// IPR005824 // KOW Ribosomal_L27e // Ribosomal L27e protein family;7.3e-61 /// KOW // KOW motif;6.5e-06 IPB002784 // Ribosomal protein L14;0.00087 --- --- --- 4506623 // ribosomal protein L27; 60S ribosomal protein L27 [Homo sapiens];8e-74 RL27_HUMAN // Gene:RPL27 60S ribosomal protein L27. length=135;5e-74 /// Q9CSM4 // Gene-TRE:RPL27 60S RIBOSOMAL PROTEIN L27 (FRAGMENT). length=85;2e-44 /// Q9SKX8 // Gene-TRE:AT2G32220 60S RIBOSOMAL PROTEIN L27. length=135;8e-40 /// Q9LIE0 // Gene-TRE:AT3G22230 Gene-TRE:MKA23.13 60S RIBOSOMAL PROTEIN L27 (PUTATIVE RIBOSOMAL PROTEIN L27). length=135;2e-39 /// RL27_HUMAN // Gene:RPL27 60S ribosomal protein L27. length=135;1e-74 /// Q9VBN5 // Gene-TRE:CG4759 60S RIBOSOMAL PROTEIN L27. length=135;2e-43 /// RL27_ARATH // SW:O23354 Gene:RPL27 Gene:AT4G15000 Gene:DL3545W 60S RIBOSOMAL PROTEIN L27. length=135;3e-39 /// RL27_YEAST // Gene:RPL27A Gene:RPL27 Gene:YHR010W Gene:RPL27B Gene:YDR471W Gene:D8035.14 60S RIBOSOMAL PROTEIN L27. length=136;6e-43 /// RL27_CAEEL // Gene:RPL-27 Gene:C53H9.1 60S ribosomal protein L27. length=136;1e-51 rc_AI176589_at RG-U34A // 89.22% ribosomal protein L27 Putative Ortholog /// 1367561_at RAE230A // 89.22% ribosomal protein L27 Putative Ortholog /// rc_AI176589_g_at RG-U34A // 89.22% ribosomal protein L27 Putative Ortholog /// rc_AI008283_s_at RG-U34B // 89.22% ribosomal protein L27 Putative Ortholog /// rc_AI101165_at RG-U34C // 89.22% ribosomal protein L27 Putative Ortholog /// 1416099_at MOE430A // ribosomal protein L27 Curated Ortholog /// 1448217_a_at MOE430A // ribosomal protein L27 Curated Ortholog /// aa518088_at Mu11KsubA // ribosomal protein L27 Curated Ortholog /// 1453096_x_at MOE430A // ribosomal protein L27 Curated Ortholog chr17q21.31 // 43313901-43316894 // + // 100 "Hs.381797 // 1 // BC021886 // Similar to ribosomal protein L27 [Homo sapiens], mRNA sequence // chr17 // 43312748-43316924 // + /// Hs.402678 // 7 // NM_000988 // ribosomal protein L27 // chr17 // 43312393-43317285 // +" 200026_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000995.1 "gb:NM_000995.1 /DEF=Homo sapiens ribosomal protein L34 (RPL34), mRNA. /FEA=mRNA /GEN=RPL34 /PROD=ribosomal protein L34 /DB_XREF=gi:4506636 /UG=Hs.250895 ribosomal protein L34 /FL=gb:L38941.1 gb:BC001773.1 gb:NM_000995.1" g4506636 Hs.250895.0 --- ribosomal protein L34 RPL34 Chr:4q25 Hs.250895 6164 P49207 --- --- --- --- NM_000995 // ribosomal protein L34 /// NM_033625 // ribosomal protein L34 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR001284 // Ribosomal protein L34e Ribosomal_L34e // Ribosomal protein L34e;1e-65 IPB001284 // Ribosomal protein L34e;3e-47 --- --- --- 20826384 // similar to 60S ribosomal protein L34 [Mus musculus];2e-60 /// 16117787 // ribosomal protein L34; 60S ribosomal protein L34 [Homo sapiens];8e-61 RL34_MOUSE // Gene:RPL34 60S ribosomal protein L34. length=116;6e-60 /// Q9BUZ2 // Gene-TRE:RPL34 SIMILAR TO RIBOSOMAL PROTEIN L34. length=117;8e-61 /// RL34_HUMAN // SW:Q9BUZ2 Gene:RPL34 60S ribosomal protein L34. length=116;3e-60 /// RL34_RAT // Gene:RPL34 60S RIBOSOMAL PROTEIN L34. length=116;3e-48 "rc_AA956855_at RN-U34 // 91.85% nuclear receptor subfamily 1, group H, member 2 Putative Ortholog /// 1389854_at RAE230A // 91.85% nuclear receptor subfamily 1, group H, member 2 Putative Ortholog /// rc_AA956855_at RG-U34A // 91.85% nuclear receptor subfamily 1, group H, member 2 Putative Ortholog /// U14533_at RG-U34A // 91.85% nuclear receptor subfamily 1, group H, member 2 Putative Ortholog /// 1370208_at RAE230A // 91.85% nuclear receptor subfamily 1, group H, member 2 Putative Ortholog /// U14533_at RN-U34 // 91.85% nuclear receptor subfamily 1, group H, member 2 Putative Ortholog /// 96309_r_at MG-U74Av2 // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog /// aa541910_s_at Mu11KsubA // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog /// 96308_r_at MG-U74Av2 // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog /// aa541910_r_at Mu11KsubA // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog /// 1438655_a_at MOE430A // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog /// 1427875_a_at MOE430A // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog /// 96307_s_at MG-U74Av2 // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog" chr8q22.1 // 94815527-94815830 // - // 95 --- 200027_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004539.2 "gb:NM_004539.2 /DEF=Homo sapiens asparaginyl-tRNA synthetase (NARS), mRNA. /FEA=mRNA /GEN=NARS /PROD=asparaginyl-tRNA synthetase /DB_XREF=gi:7262387 /UG=Hs.181311 asparaginyl-tRNA synthetase /FL=gb:BC001687.1 gb:D84273.1 gb:NM_004539.2" g7262387 Hs.181311.0 --- asparaginyl-tRNA synthetase NARS Chr:18q21.2-q21.3 Hs.406437 4677 O43776 EC:6.1.1.22 --- ENSG00000134440 --- NM_004539 // asparaginyl-tRNA synthetase 6412 // protein biosynthesis // not recorded 5737 // cytoplasm // predicted/computed /// 5625 // soluble fraction // predicted/computed 3676 // nucleic acid binding // extended:Unknown; RNA_anti; 5.3e-17 /// 4816 // asparagine-tRNA ligase // experimental evidence tRNA synthetase // experimental evidence /// RNA-binding protein // not recorded /// Ligase // experimental evidence RNA processing/modification // experimental evidence /// Protein synthesis // experimental evidence Soluble // not recorded --- Cytoplasmic // not recorded Alanine-Aspartate_Metabolism /// tRNA_Synthetases MAP00252 // Alanine and aspartate metabolism /// MAP00970 // Aminoacyl-tRNA biosynthesis "IPR004364 // tRNA synthetase, class II (D, K and N) /// IPR004365 // OB-fold nucleic acid binding domain /// IPR002312 // Aspartyl-tRNA synthetase, class IIb /// IPR004522 // Asparaginyl-tRNA synthetase, class IIb" "tRNA_anti // OB-fold nucleic acid binding domain;5.3e-17 /// tRNA-synt_2 // tRNA synthetases class II (D, K and N);6.3e-125" --- d1b8aa2 // d.104.1.1 // Aspartyl-tRNA synthetase (AspRS) ;3.85e-95 /// d1b8aa1 // b.40.4.1 // Aspartyl-tRNA synthetase (AspRS) ;5.36e-18 --- "EC:6.1.1.22 // SYN_HUMAN ASPARAGINYL-TRNA SYNTHETASE, CYTOPLASMIC (EC 6.1.1.22) (ASPARAGINE-- TRNA LIGASE) (ASNRS).;1.53e-165" "4758762 // asparaginyl-tRNA synthetase [Homo sapiens];0.0 /// 20879071 // similar to Asparaginyl-tRNA synthetase, cytoplasmic (Asparagine--tRNA ligase) (AsnRS) [Mus musculus];0.0" "Q9CRY5 // Gene-TRE:3010001M15RIK 3010001M15RIK PROTEIN (FRAGMENT). length=251;1e-141 /// SYN_CAEEL // Gene:NRS-1 Gene:F22D6.3 Asparaginyl-tRNA synthetase, cytoplasmic (EC 6.1.1.22) (Asparagine-- tRNA ligase) (AsnRS). length=545;0 /// SYN_HUMAN // Gene:NARS Gene:ASNS Asparaginyl-tRNA synthetase, cytoplasmic (EC 6.1.1.22) (Asparagine-- tRNA ligase) (AsnRS). length=548;0" rc_AA956946_at RG-U34B // 82.66% ESTs Putative Ortholog /// 1372220_at RAE230A // 82.66% ESTs Putative Ortholog /// 170777_at MG-U74Cv2 // asparaginyl-tRNA synthetase Curated Ortholog /// Msa.8538.0_s_at Mu11KsubB // asparaginyl-tRNA synthetase Curated Ortholog /// 1452866_at MOE430A // asparaginyl-tRNA synthetase Curated Ortholog /// 95070_at MG-U74Av2 // asparaginyl-tRNA synthetase Curated Ortholog /// 1428666_at MOE430A // asparaginyl-tRNA synthetase Curated Ortholog /// Msa.24693.0_s_at Mu11KsubB // asparaginyl-tRNA synthetase Curated Ortholog /// aa673561_s_at Mu11KsubA // asparaginyl-tRNA synthetase Curated Ortholog chr18q21.31 // 55242538-55242939 // - // 100 Hs.406437 // 4 // NM_004539 // asparaginyl-tRNA synthetase // chr18 // 55242501-55263624 // - 200028_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_020151.1 "gb:NM_020151.1 /DEF=Homo sapiens GTT1 protein (GTT1), mRNA. /FEA=mRNA /GEN=GTT1 /PROD=GTT1 protein /DB_XREF=gi:9910251 /UG=Hs.283722 GTT1 protein /FL=gb:AF270647.1 gb:NM_020151.1" g9910251 Hs.283722.0 "1500074343 (2 transcripts, 1 gene cluster)" START domain containing 7 STARD7 Chr:2q11.1 Hs.283722 56910 AAH14274 /// Q9NQZ5 --- --- ENSG00000084090 --- NM_020151 // START domain containing 7 /// NM_139267 // START domain containing 7 --- --- --- --- --- --- --- --- --- --- IPR002913 // Lipid-binding START START // START domain;3.2e-09 --- --- --- --- 22800656 // similar to START domain containing 7 [Homo sapiens];e-173 /// 9910252 // START domain containing 7 [Homo sapiens];e-173 STR7_HUMAN // SW:Q969M6 Gene:STARD7 StAR-related lipid transfer protein 7 (StARD7) (START domain- containing protein 7) (GTT1 protein). length=295;1e-173 /// Q969M6 // GTT1 PROTEIN (HYPOTHETICAL 34.6 KDA PROTEIN). length=295;1e-172 /// STR7_MOUSE // Gene:STARD7 StAR-related lipid transfer protein 7 (StARD7) (START domain- containing protein 7). length=295;1e-162 1453081_at MOE430B // 82.23% RIKEN cDNA 2410022M11 gene Putative Ortholog /// 107416_at MG-U74Bv2 // 82.23% RIKEN cDNA 2410022M11 gene Putative Ortholog chr2q11.2 // 95304790-95305143 // - // 100 Hs.283722 // 17 // NM_020151 // START domain containing 7 // chr2 // 95304716-95328683 // - /// Hs.283722 // 17 // NM_139267 // START domain containing 7 // chr2 // 95304716-95328683 // - 200029_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000981.1 "gb:NM_000981.1 /DEF=Homo sapiens ribosomal protein L19 (RPL19), mRNA. /FEA=mRNA /GEN=RPL19 /PROD=ribosomal protein L19 /DB_XREF=gi:4506608 /UG=Hs.252723 ribosomal protein L19 /FL=gb:BC000530.1 gb:NM_000981.1" g4506608 Hs.252723.0 --- ribosomal protein L19 RPL19 Chr:17q11.2-q12 Hs.252723 6143 P14118 --- --- ENSG00000108298 --- NM_000981 // ribosomal protein L19 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // not recorded /// Ribosomal subunit // not recorded Protein synthesis // not recorded Ribosome-associated // not recorded General cellular role // not recorded Cytoplasmic // not recorded --- --- IPR000196 // Ribosomal protein L19e Ribosomal_L19e // Ribosomal protein L19e;3.6e-104 IPB000196 // Ribosomal protein L19e;1.2e-78 d1jj2o_ // a.94.1.1 // Ribosomal protein L19 (L19e) ;9.27e-67 --- --- 4506609 // ribosomal protein L19; 60S ribosomal protein L19 [Homo sapiens];e-106 /// 6677773 // ribosomal protein L19 [Mus musculus];e-106 RL19_YEAST // Gene:RPL19A Gene:YBR084BC Gene:RPL19B Gene:YBL027W Gene:YBL0424 60S RIBOSOMAL PROTEIN L19 (L23) (YL14) (RP33) (RP15L). length=188;1e-59 /// RL19_MOUSE // Gene:RPL19 60S RIBOSOMAL PROTEIN L19. length=196;1e-107 /// Q63287 // Gene-TRE:RP L19 RIBOSOMAL PROTEIN L19 (FRAGMENT). length=35;6e-15 /// RL19_HUMAN // SW:P22908 Gene:RPL19 60S ribosomal protein L19. length=196;1e-108 /// RL19_HUMAN // SW:P22908 Gene:RPL19 60S ribosomal protein L19. length=196;1e-107 rc_AA800054_at RG-U34A // 90.45% ribosomal protein L19 Putative Ortholog /// 1367610_at RAE230A // 90.45% ribosomal protein L19 Putative Ortholog /// 1387651_at RAE230A // 90.45% aquaporin 1 Putative Ortholog /// X67948_at RG-U34A // 90.45% aquaporin 1 Putative Ortholog /// 1369625_at RAE230A // 90.45% aquaporin 1 Putative Ortholog /// M62952_f_at Mu11KsubA // ribosomal protein L19 Curated Ortholog /// 97483_at MG-U74Av2 // ribosomal protein L19 Curated Ortholog /// 161961_at MG-U74Av2 // ribosomal protein L19 Curated Ortholog /// 1416219_at MOE430A // ribosomal protein L19 Curated Ortholog chr17q12 // 39355358-39358744 // + // 100 Hs.252723 // 5 // NM_000981 // ribosomal protein L19 // chr17 // 39354380-39358791 // + 200030_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_002635.1 "gb:NM_002635.1 /DEF=Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 (SLC25A3), nuclear gene encoding mitochondrial protein, transcript variant 1b, mRNA. /FEA=mRNA /GEN=SLC25A3 /PROD=phosphate carrier precursor isoform 1b /DB_XREF=gi:4505774 /UG=Hs.78713 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 /FL=gb:BC000998.1 gb:BC001328.1 gb:BC003504.1 gb:BC004345.1 gb:NM_002635.1" g4505774 Hs.78713.0 "1500074344 (3 transcripts, 1 gene cluster)" "solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3" SLC25A3 Chr:12q23 Hs.78713 5250 BAB93517 /// Q00325 /// Q8NCF7 --- --- ENSG00000075415 --- NM_002635 // phosphate carrier precursor isoform 1b /// NM_005888 // phosphate carrier precursor isoform 1a 6091 // energy pathways // predicted/computed /// 6832 // small molecule transport // predicted/computed 5743 // mitochondrial inner membrane // predicted/computed /// 5739 // mitochondrion // predicted/computed /// 5887 // integral to plasma membrane // predicted/computed 5488 // binding // extended:traceable author statement; mito_carr; 3.6e-27 /// 5488 // binding // extended:traceable author statement; mito_carr; 7.7e-27 /// 15320 // phosphate carrier // predicted/computed "Active transporter, secondary // not recorded" Energy generation // not recorded Integral membrane // predicted/computed --- Mitochondrial // not recorded --- --- "IPR000408 // Regulator of chromosome condensation, RCC1 /// IPR001993 // Mitochondrial substrate carrier" mito_carr // Mitochondrial carrier protein;5.5e-64 /// mito_carr // Mitochondrial carrier protein;1.4e-63 IPB001993 // Mitochondrial energy transfer proteins (carrier protein);2.8e-19 /// IPB001993 // Mitochondrial energy transfer proteins (carrier protein);2.2e-19 --- numtm:2;Nin-prob:0.35264;type:tm;type:tm; /// numtm:2;Nin-prob:0.48035;type:tm;type:tm; --- "4505775 // phosphate carrier precursor isoform 1b; phosphate carrier, mitochondrial; phosphate carrier, mitochondrial precursor [Homo sapiens];0.0 /// 22760412 // unnamed protein product [Homo sapiens];0.0 /// 6031192 // phosphate carrier precursor isoform 1a; phosphate carrier, mitochondrial; phosphate carrier, mitochondrial precursor [Homo sapiens];0.0" "MPCP_MOUSE // Gene:SLC25A3 Phosphate carrier protein, mitochondrial precursor (PTP). length=357;0 /// MPCP_HUMAN // SW:Q96A03 Gene:SLC25A3 Gene:PHC Phosphate carrier protein, mitochondrial precursor (PTP). length=362;0 /// Q99KS5 // SIMILAR TO SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER, PHOSPHATE CARRIER), MEMBER 3. length=357;0 /// MPCP_RAT // Gene:SLC25A3 Gene:PHC Phosphate carrier protein, mitochondrial precursor (PTP). length=356;0 /// Q9VUF1 // Gene-TRE:MPCP Gene-TRE:CG4994 MPCP PROTEIN. length=356;1e-142 /// Q9V916 // Gene-TRE:CG9090 CG9090 PROTEIN. length=374;1e-143 /// Q9XZE4 // Gene-TRE:MPCP Gene-TRE:CG4994 PHOSPHATE TRANSPORTER PRECURSOR. length=356;1e-141" "1370277_at RAE230A // 88.79% solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 3 Putative Ortholog /// rc_AA892776_at RG-U34A // 88.79% solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 3 Putative Ortholog /// 1416300_a_at MOE430A // solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 Curated Ortholog /// 93506_at MG-U74Av2 // solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 Curated Ortholog" chr12q23.1 // 99497566-99499037 // + // 100 "Hs.78713 // 16 // NM_002635 // solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 // chr12 // 99491264-99499276 // + /// Hs.78713 // 16 // NM_005888 // solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 // chr12 // 99491264-99499276 // +" 200031_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001015.1 "gb:NM_001015.1 /DEF=Homo sapiens ribosomal protein S11 (RPS11), mRNA. /FEA=mRNA /GEN=RPS11 /PROD=ribosomal protein S11 /DB_XREF=gi:4506680 /UG=Hs.182740 ribosomal protein S11 /FL=gb:NM_001015.1" g4506680 Hs.182740.0 "1500074345 (3 transcripts, 1 gene cluster)" ribosomal protein S11 RPS11 Chr:19q13.3 Hs.182740 6205 P04643 --- --- ENSG00000142534 --- NM_001015 // ribosomal protein S11 6412 // protein biosynthesis // predicted/computed 5840 // ribosome // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // not recorded /// Ribosomal subunit // not recorded Protein synthesis // not recorded Ribosome-associated // not recorded General cellular role // not recorded Cytoplasmic // predicted/computed --- --- IPR000266 // Ribosomal protein S17 Ribosomal_S17 // Ribosomal protein S17;1.9e-41 IPB000266 // Ribosomal protein S17;5.6e-34 d1rip__ // b.40.4.5 // Ribosomal protein S17 ;1.08e-24 --- --- 4506681 // ribosomal protein S11; 40S ribosomal protein S11 [Homo sapiens];1e-87 /// 13516490 // ribosomal protein S11 [Gallus gallus];1e-85 RS11_HUMAN // Gene:RPS11 40S ribosomal protein S11. length=158;3e-89 /// Q9CW75 // Gene-TRE:RPS11 RIBOSOMAL PROTEIN S11 (FRAGMENT). length=64;3e-32 /// Q9V679 // Gene-TRE:CG8857 CG8857 PROTEIN. length=155;5e-58 /// R11G_ARATH // Gene:AT4G30800 Gene:F6I18.290 40S RIBOSOMAL PROTEIN S11-LIKE. length=159;4e-51 /// RS11_HUMAN // Gene:RPS11 40S ribosomal protein S11. length=158;9e-89 /// RS11_HUMAN // Gene:RPS11 40S ribosomal protein S11. length=158;2e-88 /// Q20206 // Gene-TRE:F40F11.1 F40F11.1 PROTEIN. length=155;5e-57 /// Q9FFA6 // Gene-TRE:MRO11.22/AT5G23740 40S RIBOSOMAL PROTEIN S11 (PUTATIVE 40S RIBOSOMAL PROTEIN S11). length=159;6e-48 1367630_at RAE230A // 90.16% ribosomal protein S11 Putative Ortholog /// K03250_at RG-U34A // 90.16% ribosomal protein S11 Putative Ortholog /// 1398787_at RAE230A // 90.16% Ras homolog enriched in brain Putative Ortholog /// rc_AI009605_at RG-U34A // 90.16% Ras homolog enriched in brain Putative Ortholog /// rc_AA851381_at RG-U34A // 90.16% Ras homolog enriched in brain Putative Ortholog /// 1375360_at RAE230A // 90.16% Ras homolog enriched in brain Putative Ortholog /// 94767_at MG-U74Av2 // ribosomal protein S11 Curated Ortholog /// 1424000_a_at MOE430A // ribosomal protein S11 Curated Ortholog /// 161095_i_at MG-U74Av2 // ribosomal protein S11 Curated Ortholog chr12q24.33 // 132955840-132956278 // + // 96 /// chr19q13.33 // 50368585-50370980 // + // 96 Hs.182740 // 2 // BC016378 // ribosomal protein S11 // chr12 // 132955835-132956399 // + /// Hs.182740 // 2 // BC016378 // ribosomal protein S11 // chr19 // 50368585-50371083 // + 200032_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000661.1 "gb:NM_000661.1 /DEF=Homo sapiens ribosomal protein L9 (RPL9), mRNA. /FEA=mRNA /GEN=RPL9 /PROD=ribosomal protein L9 /DB_XREF=gi:4506664 /UG=Hs.157850 ribosomal protein L9 /FL=gb:U09953.1 gb:NM_000661.1" g4506664 Hs.157850.0 "1500074346 (2 transcripts, 1 gene cluster)" ribosomal protein L9 RPL9 Chr:4p13 Hs.157850 6133 AAH31906 /// P32969 --- --- ENSG00000169653 /// ENSG00000169303 --- NM_000661 // ribosomal protein L9 6412 // protein biosynthesis // predicted/computed 5840 // ribosome // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- "IPR002359 // Ribosomal protein L6, signature 2 /// IPR000702 // Ribosomal protein L6" Ribosomal_L6 // Ribosomal protein L6;3.2e-42 "IPB002358 // Ribosomal protein L6, signature 1;5.9e-06" d1rl6a1 // d.141.1.1 // Ribosomal protein L6 ;1.07e-12 --- --- "2136121 // ribosomal protein L9, cytosolic - human;e-104 /// 14720157 // similar to ribosomal protein L9; 60S ribosomal protein L9 [Homo sapiens];e-105" "RL9_HUMAN // Gene:RPL9 60S ribosomal protein L9. length=192;1e-105 /// Q9JK58 // Gene-TRE:RPL9 60S RIBOSOMAL PROTEIN L9. length=192;1e-104 /// RL9_MOUSE // SW:Q9JK58 Gene:RPL9 60S ribosomal protein L9. length=192;1e-104 /// RL9B_YEAST // Gene:RPL9B Gene:YNL067W Gene:N2406 Gene:YNL2406W 60S RIBOSOMAL PROTEIN L9-B (L8) (YL11) (RP25). length=191;2e-46 /// RL9_ARATH // SW:Q9LDX2 Gene:RPL9B Gene:AT1G33120 Gene:T9L6.2 Gene:RPL9C Gene:AT1G33140 Gene:T9L6.5 60S ribosomal protein L9. length=194;2e-56 /// RL9_RAT // Gene:RPL9 60S RIBOSOMAL PROTEIN L9. length=192;1e-104 /// RL9_CAEEL // Gene:RPL-9 Gene:R13A5.8 60S ribosomal protein L9. length=189;2e-65 /// Q9LDX2 // Gene-TRE:T9L6.5 Gene-TRE:T9L6.2 Gene-TRE:AT1G33120 PUTATIVE 60S RIBOSOMAL PROTEIN L9 (T9L6.2) (AT1G33140/T9L6_10) (RIBOSOMAL PROTEIN L9, PUTATIVE). length=194;2e-56 /// Q9SZX9 // Gene-TRE:F7L13.30 Gene-TRE:AT4G10450 PUTATIVE RIBOSOMAL PROTEIN L9, CYTOSOLIC (PUTATIVE CYTOSOLIC RIBOSOMAL PROTEIN L9). length=194;3e-56" 164935_r_at MG-U74Bv2 // ribosomal protein L9 Curated Ortholog /// 1443843_x_at MOE430B // ribosomal protein L9 Curated Ortholog /// 167724_r_at MG-U74Cv2 // ribosomal protein L9 Curated Ortholog /// aa050526_f_at Mu11KsubA // ribosomal protein L9 Curated Ortholog /// 1436798_at MOE430A // ribosomal protein L9 Curated Ortholog /// 1416420_a_at MOE430A // ribosomal protein L9 Curated Ortholog chr15q25.2 // 75822414-75822964 // - // 100 /// chr15q25.2 // 75974466-75975016 // - // 100 /// chr4p14 // 39630208-39634299 // - // 99 /// chrXp22.11 // 22351075-22351625 // - // 99 "Hs.406464 // 1 // BC008758 // EST // chrX // 22351014-22351721 // - /// Hs.420233 // 1 // AL832047 // Homo sapiens mRNA; cDNA DKFZp313J1510 (from clone DKFZp313J1510), mRNA sequence // chr4 // 39630158-39634945 // - /// Hs.381667 // 1 // BC007261 // Unknown (protein for MGC:15545) [Homo sapiens], mRNA sequence // chrX // 22351015-22351723 // - /// Hs.157850 // 11 // NM_000661 // ribosomal protein L9 // chr4 // 39630157-39634948 // -" 200033_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004396.2 "gb:NM_004396.2 /DEF=Homo sapiens DEADH (Asp-Glu-Ala-AspHis) box polypeptide 5 (RNA helicase, 68kD) (DDX5), mRNA. /FEA=mRNA /GEN=DDX5 /PROD=DEADH (Asp-Glu-Ala-AspHis) box polypeptide 5 /DB_XREF=gi:13514826 /UG=Hs.76053 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 5 (RNA helicase, 68kD) /FL=gb:NM_004396.2" g13514826 Hs.76053.0 --- "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kDa)" DDX5 Chr:17q21 Hs.76053 1655 P17844 --- --- ENSG00000108654 --- NM_004396 // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 --- --- 5524 // ATP binding // extended:inferred from electronic annotation; DEAD; 2.6e-78 --- --- --- --- --- --- --- "IPR001650 // Helicase, C-terminal /// IPR000629 // ATP-dependent helicase, DEAD-box /// IPR001410 // DEAD/DEAH box helicase" DEAD // DEAD/DEAH box helicase;2.6e-78 /// helicase_C // Helicase conserved C-terminal domain;3.7e-32 IPB000330 // SNF2 related domain;0.00068 d1hv8a1 // c.37.1.13 // Putative DEAD box RNA helicase ;5.64e-65 --- --- "6681157 // DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide 5; D-E-A-D (aspartate-glutamate-alanine-aspartate) box polypeptide 5 [Mus musculus];0.0 /// 4758138 // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kD); DEAD/H box-5 (RNA helicase, 68kD); RNA-dependent ATPase [Homo sapiens];0.0" "O75681 // Gene-TRE:DDX5 P68 RNA HELICASE (FRAGMENT). length=111;4e-58 /// Q9CSD9 // Gene-TRE:DDX5 DEAD (ASPARTATE-GLUTAMATE-ALANINE-ASPARTATE) BOX POLYPEPTIDE 5 (FRAGMENT). length=304;1e-175 /// DDX5_HUMAN // SW:O75681 Gene:DDX5 Gene:HLR1 Gene:HELR Probable RNA-dependent helicase p68 (DEAD-box protein p68) (DEAD-box protein 5). length=614;0 /// O35662 // Gene-TRE:HLR1 P68 RNA HELICASE (FRAGMENT). length=169;1e-95 /// DDX5_MOUSE // Gene:DDX5 Gene:TNZ2 PROBABLE RNA-DEPENDENT HELICASE P68 (DEAD-BOX PROTEIN P68) (DEAD-BOX PROTEIN 5) (DEAD-BOX RNA HELICASE DEAD1) (MDEAD1). length=614;0 /// Q921Y3 // SIMILAR TO DEAD/H (ASP-GLU-ALA-ASP/HIS) BOX POLYPEPTIDE 5 (RNA HELICASE, 68KD). length=127;1e-68 /// O77731 // Gene-TRE:DDX5 P68 RNA HELICASE (FRAGMENT). length=111;3e-62" 1454793_x_at MOE430A // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 Curated Ortholog /// Msa.2334.0_f_at Mu11KsubB // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 Curated Ortholog /// 1433809_at MOE430A // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 Curated Ortholog /// 1438371_x_at MOE430A // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 Curated Ortholog /// 1419653_a_at MOE430A // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 Curated Ortholog /// 93493_at MG-U74Av2 // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 Curated Ortholog /// 1433810_x_at MOE430A // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 Curated Ortholog /// X65627_f_at Mu11KsubB // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 Curated Ortholog chr17q24.2 // 68982332-68982757 // + // 100 "Hs.76053 // 5 // NM_004396 // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kDa) // chr17 // 68976219-68982889 // +" 200034_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000970.1 "gb:NM_000970.1 /DEF=Homo sapiens ribosomal protein L6 (RPL6), mRNA. /FEA=mRNA /GEN=RPL6 /PROD=ribosomal protein L6 /DB_XREF=gi:4506656 /UG=Hs.174131 ribosomal protein L6 /FL=gb:BC004138.1 gb:D17554.1 gb:NM_000970.1 gb:AF261087.1" g4506656 Hs.174131.0 "1500074347 (2 transcripts, 1 gene cluster)" ribosomal protein L6 RPL6 Chr:12q24.1 Hs.349961 6128 AAH32299 /// Q02878 /// Q8N5Z7 /// Q8TBK5 /// Q8WW97 /// Q9HBB3 --- --- ENSG00000089009 --- NM_000970 // ribosomal protein L6 "6412 // protein biosynthesis // predicted/computed /// 6355 // regulation of transcription, DNA-dependent // predicted/computed" 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed /// 3677 // DNA binding // experimental evidence RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- "IPR005568 // Ribosomal protein L6, N-terminal /// IPR000915 // Ribosomal protein L6E" "Ribosomal_L6e_N // Ribosomal protein L6, N-terminal doma;2.7e-36 /// Ribosomal_L6e // Ribosomal protein L6e;4.7e-72" IPB000915 // Ribosomal protein L6E;4.7e-92 --- --- --- 18490263 // ribosomal protein L6 [Homo sapiens];e-162 /// 16753227 // ribosomal protein L6; 60S ribosomal protein L6; tax-responsive enhancer element-binding protein 107; DNA-binding protein TAXREB107; neoplasm-related protein C140 [Homo sapiens];e-162 Q925C3 // Gene-TRE:RPL6 RIBOSOMAL PROTEIN L6. length=296;1e-120 /// Q8WW97 // RIBOSOMAL PROTEIN L6. length=288;1e-141 /// Q9HBB3 // 60S RIBOSOMAL PROTEIN L6. length=289;1e-139 /// RL6_RAT // SW:Q64624 Gene:RPL6 60S RIBOSOMAL PROTEIN L6 (NEOPLASM-RELATED PROTEIN C140). length=296;1e-122 /// RL6_HUMAN // Gene:RPL6 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) (Neoplasm-related protein C140). length=287;1e-142 "1375848_at RAE230A // 83.97% ESTs, Weakly similar to PON1_RAT Serum paraoxonase/arylesterase 1 (PON 1) (Serum aryldiakylphosphatase 1) (A-esterase 1) (Aromatic esterase 1) [R.norvegicus] Putative Ortholog /// rc_AI169105_at RG-U34C // 83.97% ESTs, Weakly similar to PON1_RAT Serum paraoxonase/arylesterase 1 (PON 1) (Serum aryldiakylphosphatase 1) (A-esterase 1) (Aromatic esterase 1) [R.norvegicus] Putative Ortholog /// 1367567_at RAE230A // 83.97% ribosomal protein L6 Putative Ortholog /// rc_AA799672_s_at RG-U34A // 83.97% ribosomal protein L6 Putative Ortholog /// 1416546_a_at MOE430A // ribosomal protein L6 Curated Ortholog /// x81987_f_at Mu11KsubB // ribosomal protein L6 Curated Ortholog /// Msa.28808.0_f_at Mu11KsubB // ribosomal protein L6 Curated Ortholog /// Msa.23709.0_f_at Mu11KsubB // ribosomal protein L6 Curated Ortholog /// 96962_at MG-U74Av2 // ribosomal protein L6 Curated Ortholog /// Msa.2713.0_f_at Mu11KsubB // ribosomal protein L6 Curated Ortholog" chr12q24.13 // 112320210-112321877 // - // 98 /// chr18p11.31 // 6526165-6526704 // - // 99 /// chr4q13.1 // 66423610-66424152 // + // 98 /// chr7q33 // 135749361-135749900 // + // 98 Hs.349961 // 9 // NM_000970 // ribosomal protein L6 // chr12 // 112320176-112323645 // - /// Hs.349961 // 5 // NM_000970 // ribosomal protein L6 // chr4 // 66423263-66424195 // + 200035_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_015343.1 "gb:NM_015343.1 /DEF=Homo sapiens hypothetical protein (HSA011916), mRNA. /FEA=mRNA /GEN=HSA011916 /PROD=hypothetical protein /DB_XREF=gi:7661721 /UG=Hs.84359 hypothetical protein /FL=gb:NM_015343.1" g7661721 Hs.84359.0 --- likely ortholog of Xenopus dullard HSA011916 Chr:17p13 Hs.84359 23399 O95476 --- --- ENSG00000004978 /// ENSG00000169963 --- NM_015343 // likely ortholog of Xenopus dullard --- --- --- --- --- --- --- --- --- --- IPR004274 // NLI interacting factor NIF // NLI interacting factor;3.6e-120 --- --- numtm:1;Nin-prob:0.96557;type:signal; --- 7661722 // likely ortholog of Xenopus dullard; hypothetical protein HSA011916 [Homo sapiens];e-138 /// 22064567 // similar to hypothetical protein HSA011916 [Homo sapiens];e-138 O95476 // HYPOTHETICAL 28.3 KDA PROTEIN. length=244;1e-139 /// Q9CSS5 // Gene-TRE:2610507E10RIK 2610507E10RIK PROTEIN (FRAGMENT). length=342;2e-91 /// Q96GQ9 // UNKNOWN (PROTEIN FOR MGC:16648). length=244;1e-138 /// Q8VEL4 // HYPOTHETICAL 28.4 KDA PROTEIN. length=244;1e-138 1452100_at MOE430A // Dullard homolog (Xenopus laevis) Curated Ortholog /// 113195_at MG-U74Bv2 // Dullard homolog (Xenopus laevis) Curated Ortholog chr17p13.1 // 7876511-7877022 // - // 100 Hs.84359 // 2 // NM_015343 // likely ortholog of Xenopus dullard // chr17 // 7876468-7884201 // - 200036_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_007104.2 "gb:NM_007104.2 /DEF=Homo sapiens ribosomal protein L10a (RPL10A), mRNA. /FEA=mRNA /GEN=RPL10A /PROD=ribosomal protein L10a /DB_XREF=gi:6325471 /UG=Hs.252574 ribosomal protein L10a /FL=gb:U12404.1 gb:NM_007104.2" g6325471 Hs.252574.0 "1500074348 (2 transcripts, 1 gene cluster)" ribosomal protein L10a RPL10A Chr:6p21.3-p21.2 Hs.334895 4736 BAC16802 /// P53025 --- --- ENSG00000007869 --- NM_007104 // ribosomal protein L10a 7345 // embryogenesis and morphogenesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural constituent of ribosome // extended:traceable author statement; Ribosomal_L1; 1.6e-101 --- --- --- --- --- --- --- IPR002143 // Ribosomal protein L1 Ribosomal_L1 // Ribosomal protein L1p/L10e family;1.6e-101 IPB002143 // Ribosomal protein L1;7.2e-52 d1dwua_ // e.24.1.1 // Ribosomal protein L1 ;8.68e-76 --- --- 13592009 // ribosomal protein L10a [Rattus norvegicus];e-120 /// 531171 // Csa-19;e-119 "Q9N4I4 // Gene-TRE:Y71F9AL.13 RIBOSOMAL PROTEIN L1. length=216;8e-88 /// Q9VFE0 // Gene-TRE:CG3843 CG3843 PROTEIN. length=216;6e-65 /// Q9FMQ7 // RIBOSOMAL PROTEIN L1. length=217;9e-78 /// Q8VZB9 // Gene-TRE:AT1G08360, T27G7.6 PUTATIVE RIBOSOMAL PROTEIN L10. length=216;4e-79 /// Q99JL6 // PUTATIVE RIBOSOMAL PROTEIN L1. length=133;4e-70 /// R10A_RAT // Gene:RPL10A 60S RIBOSOMAL PROTEIN L10A. length=217;1e-121 /// R10A_YEAST // Gene:RPL1A Gene:SSM1A Gene:SSM1 Gene:YPL220W Gene:RPL1B Gene:SSM1B Gene:SSM2 OR Gene:YGL135W Gene:G2834 60S ribosomal protein L1 (L10a). length=217;1e-71 /// R10A_HUMAN // SW:P52859 Gene:RPL10A 60S ribosomal protein L10a (CSA-19). length=217;1e-121 /// Q9C5M4 // Gene-TRE:F15K20.37/AT2G27530 RIBOSOMAL PROTEIN L1. length=216;1e-79 /// R10A_MOUSE // Gene:RPL10A Gene:NEDD6 60S RIBOSOMAL PROTEIN L10A (CSA-19) (NEDD-6). length=217;1e-120 /// R10A_HUMAN // SW:P52859 Gene:RPL10A 60S ribosomal protein L10a (CSA-19). length=217;1e-120 /// R10A_ARATH // Gene:RPL10A 60S RIBOSOMAL PROTEIN L10A (FRAGMENT). length=126;5e-41" 1383684_at RAE230A // 89.22% ESTs Putative Ortholog /// rc_AA860055_at RG-U34A // 89.22% ESTs Putative Ortholog /// 1367580_at RAE230A // 89.22% ribosomal protein L10a Putative Ortholog /// X93352_at RG-U34A // 89.22% ribosomal protein L10a Putative Ortholog /// AA673187_rc_at Mu11KsubA // ribosomal protein L10A Curated Ortholog /// 1431177_a_at MOE430A // ribosomal protein L10A Curated Ortholog /// Msa.1847.0_f_at Mu11KsubB // ribosomal protein L10A Curated Ortholog /// U12403_f_at Mu11KsubA // ribosomal protein L10A Curated Ortholog /// 161327_f_at MG-U74Av2 // ribosomal protein L10A Curated Ortholog /// 100711_at MG-U74Av2 // ribosomal protein L10A Curated Ortholog chr6p21.31 // 35433164-35434490 // + // 99 Hs.334895 // 6 // NM_007104 // ribosomal protein L10a // chr6 // 35432610-35434972 // + 200037_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_016587.1 "gb:NM_016587.1 /DEF=Homo sapiens heterochromatin-like protein 1 (HECH), mRNA. /FEA=mRNA /GEN=HECH /PROD=heterochromatin-like protein 1 /DB_XREF=gi:7705406 /UG=Hs.278554 heterochromatin-like protein 1 /FL=gb:AF136630.1 gb:NM_016587.1" g7705406 Hs.278554.0 "1500074349 (3 transcripts, 2 gene clusters)" "chromobox homolog 3 (HP1 gamma homolog, Drosophila)" CBX3 Chr:7p15.2 Hs.406384 11335 Q13185 --- --- ENSG00000122565 --- NM_007276 // chromobox homolog 3 /// NM_016587 // chromobox homolog 3 --- 5634 // nucleus // predicted/computed 3682 // chromatin binding // predicted/computed DNA-binding protein // predicted/computed Chromatin/chromosome structure // predicted/computed DNA-associated (direct or indirect) // predicted/computed --- Nuclear // predicted/computed --- --- IPR000953 // Chromo domain chromo // 'chromo' (CHRromatin Organization MOdif;2.3e-21 /// Chromo_shadow // Chromo shadow domain;1.4e-38 IPB000953 // Chromo domain;4.4e-09 "d1dz1a_ // d.9.2.2 // Modifier protein 1 (M31, HP1 beta) ;5.02e-32" --- --- 7416937 // heterochromatin-like protein 1 [Homo sapiens];e-102 /// 15082258 // chromobox homolog 3; heterochromatin protein HP1 gamma; HP1 gamma homolog; heterochromatin-like protein 1 [Homo sapiens];e-103 Q9DCC5 // Gene-TRE:CBX3 CHROMOBOX HOMOLOG 3 (DROSOPHILA HP1 GAMMA) (HYPOTHETICAL 20.8 KDA PROTEIN). length=183;1e-103 /// Q96CD7 // HYPOTHETICAL 8.3 KDA PROTEIN (FRAGMENT). length=73;7e-37 /// Q921C4 // Gene-TRE:CBX3 HETEROCHROMATIN PROTEIN 1 GAMMA (HP1-GAMMA). length=183;1e-102 /// Q9BVS3 // HETEROCHROMATIN-LIKE PROTEIN 1. length=183;1e-103 /// Q9P0Z6 // Gene-TRE:HECH HETEROCHROMATIN-LIKE PROTEIN 1. length=183;1e-103 /// CBX3_MOUSE // SW:Q921C4 Gene:CBX3 Chromobox protein homolog 3 (Heterochromatin protein 1 homolog gamma) (HP1 gamma) (Modifier 2 protein) (M32). length=183;1e-102 /// CBX3_HUMAN // SW:Q99409 SW:Q9BVS3 SW:Q9P0Z6 SW:Q96CD7 Gene:CBX3 Chromobox protein homolog 3 (Heterochromatin protein 1 homolog gamma) (HP1 gamma) (Modifier 2 protein) (HECH). length=183;1e-102 "rc_AI008815_s_at RG-U34A // 88.31% cytochrome c, somatic Putative Ortholog /// 1369939_at RAE230A // 88.31% cytochrome c, somatic Putative Ortholog /// 1387773_at RAE230A // 88.31% cytochrome c, somatic Putative Ortholog /// Msa.2457.0_at Mu11KsubB // chromobox homolog 3 (Drosophila HP1 gamma) Curated Ortholog /// 1448504_a_at MOE430A // chromobox homolog 3 (Drosophila HP1 gamma) Curated Ortholog /// 131700_at MG-U74Cv2 // chromobox homolog 3 (Drosophila HP1 gamma) Curated Ortholog /// 1454305_at MOE430A // chromobox homolog 3 (Drosophila HP1 gamma) Curated Ortholog /// 160272_at MG-U74Av2 // chromobox homolog 3 (Drosophila HP1 gamma) Curated Ortholog /// 100405_at MG-U74Av2 // chromobox homolog 3 (Drosophila HP1 gamma) Curated Ortholog /// 1416884_at MOE430A // chromobox homolog 3 (Drosophila HP1 gamma) Curated Ortholog /// 1439421_x_at MOE430A // chromobox homolog 3 (Drosophila HP1 gamma) Curated Ortholog /// aa521730_at Mu11KsubA // chromobox homolog 3 (Drosophila HP1 gamma) Curated Ortholog" chr7p15.2 // 25894867-25895199 // + // 100 "Hs.406384 // 6 // NM_007276 // chromobox homolog 3 (HP1 gamma homolog, Drosophila) // chr7 // 25883378-25895256 // + /// Hs.406384 // 6 // NM_016587 // chromobox homolog 3 (HP1 gamma homolog, Drosophila) // chr7 // 25883603-25895256 // +" 200038_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000985.1 "gb:NM_000985.1 /DEF=Homo sapiens ribosomal protein L17 (RPL17), mRNA. /FEA=mRNA /GEN=RPL17 /PROD=ribosomal protein L17 /DB_XREF=gi:4506616 /UG=Hs.82202 ribosomal protein L17 /FL=gb:BC000502.1 gb:NM_000985.1" g4506616 Hs.82202.0 "1500074350 (4 transcripts, 1 gene cluster)" ribosomal protein L17 RPL17 Chr:18q21 Hs.82202 6139 P18621 /// Q8TCD1 --- --- ENSG00000175333 /// ENSG00000174228 /// ENSG00000154022 --- NM_000985 // ribosomal protein L17 --- 5840 // ribosome // not recorded 3723 // RNA binding // not recorded /// 3735 // structural protein of ribosome // not recorded RNA-binding protein // not recorded /// Ribosomal subunit // not recorded Protein synthesis // not recorded Ribosome-associated // not recorded General cellular role // not recorded Cytoplasmic // not recorded --- --- "IPR001063 // Ribosomal protein L22/L17 /// IPR005721 // Ribosomal protein L22/L17, eukaryotic and archaeal form" Ribosomal_L22 // Ribosomal protein L22p/L17e;9.1e-68 IPB001063 // Ribosomal protein L22p / L17e;1.2e-52 d1jj2q_ // d.55.1.1 // Ribosomal protein L22 ;2.52e-70 --- --- 4506617 // ribosomal protein L17; 60S ribosomal protein L17 [Homo sapiens];e-104 /// 132805 // 60S RIBOSOMAL PROTEIN L17 (L23) (AMINO ACID STARVATION-INDUCED PROTEIN) (ASI);e-104 RL17_ARATH // Gene:RPL17 60S RIBOSOMAL PROTEIN L17 (FRAGMENT). length=114;4e-31 /// Q9BL19 // Gene-TRE:Y48G8AL.8 HYPOTHETICAL PROTEIN Y48G8AL.8. length=187;1e-65 /// O64803 // Gene-TRE:T1F15.11 T1F15.11 PROTEIN (RIBOSOMAL PROTEIN L17-LIKE PROTEIN). length=175;1e-59 /// RL17_MOUSE // Gene:RPL17 60S ribosomal protein L17 (L23). length=184;1e-104 /// RL17_HUMAN // Gene:RPL17 60S ribosomal protein L17 (L23). length=184;1e-105 /// RL17_RAT // Gene:RPL17 60S RIBOSOMAL PROTEIN L17 (L23) (AMINO ACID STARVATION-INDUCED PROTEIN) (ASI). length=184;1e-105 --- chr1p13.3 // 108512205-108512510 // + // 99 /// chr1p31.1 // 76539319-76539624 // + // 99 /// chr15q23 // 64730433-64730738 // - // 98 /// chr18q21.1 // 46815545-46817468 // - // 98 Hs.82202 // 4 // NM_000985 // ribosomal protein L17 // chr18 // 46814518-46817877 // - 200039_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_002794.1 "gb:NM_002794.1 /DEF=Homo sapiens proteasome (prosome, macropain) subunit, beta type, 2 (PSMB2), mRNA. /FEA=mRNA /GEN=PSMB2 /PROD=proteasome (prosome, macropain) subunit, betatype, 2 /DB_XREF=gi:4506194 /UG=Hs.1390 proteasome (prosome, macropain) subunit, beta type, 2 /FL=gb:BC000268.1 gb:NM_002794.1 gb:D26599.1" g4506194 Hs.1390.0 "1500074351 (1 transcript, 1 gene cluster)" "proteasome (prosome, macropain) subunit, beta type, 2" PSMB2 Chr:1p34.2 Hs.432607 5690 P49721 EC:3.4.25.1 --- --- --- NM_002794 // proteasome beta 2 subunit --- 5837 // 26S proteasome // predicted/computed 4299 // proteasome endopeptidase // extended:inferred from electronic annotation; proteasome; 5.3e-55 Proteasome subunit // not recorded Protein degradation // not recorded --- --- --- --- --- IPR001353 // Multispecific proteasome protease /// IPR000243 // Proteasome B-type subunit proteasome // Proteasome A-type and B-type;5.3e-55 IPB000426 // Proteasome A-type subunit;0.0009 d1ryph_ // d.153.1.4 // Proteasome beta subunit (catalytic) ;2.21e-46 --- --- "4506195 // proteasome beta 2 subunit; proteasome subunit, beta type, 2; macropain subunit C7-I; multicatalytic endopeptidase complex subunit C7-1; proteasome component C7-I [Homo sapiens];e-112 /// 6755200 // proteasome (prosome, macropain) subunit, beta type 2; proteasome (prosome, macropain) subunit, beta type, 2; DNA segment, Chr 4, Wayne State University 33, expressed [Mus musculus];e-109" "PSB2_MOUSE // Gene:PSMB2 Proteasome subunit beta type 2 (EC 3.4.25.1) (Proteasome component C7-I) (Macropain subunit C7-I) (Multicatalytic endopeptidase complex subunit C7-I). length=201;1e-110 /// PSB2_HUMAN // SW:P31145 Gene:PSMB2 Proteasome subunit beta type 2 (EC 3.4.25.1) (Proteasome component C7-I) (Macropain subunit C7-I) (Multicatalytic endopeptidase complex subunit C7-I). length=201;1e-113 /// Q9BWZ9 // Gene-TRE:PSMB2 BA435D7.2 (PROTEASOME (PROSOME, MACROPAIN) SUBUNIT 2, BETA TYPE) (FRAGMENT). length=95;6e-49 /// PSB2_RAT // Gene:PSMB2 Proteasome subunit beta type 2 (EC 3.4.25.1) (Proteasome component C7-I) (Macropain subunit C7-I) (Multicatalytic endopeptidase complex subunit C7-I). length=201;1e-109 /// Q9HCZ6 // Gene-TRE:PSMB2 DJ983H21.1 (PROTEASOME (PROSOME, MACROPAIN) SUBUNIT, BETA TYPE, 2) (FRAGMENT). length=51;2e-22" "1398786_at RAE230A // proteasome (prosome, macropain) subunit, beta type 2 Curated Ortholog /// 1389015_at RAE230A // ESTs, Moderately similar to RIKEN cDNA 4833415N24 [Mus musculus] [M.musculus] Curated Ortholog /// rc_AI171623_at RG-U34C // ESTs, Moderately similar to RIKEN cDNA 4833415N24 [Mus musculus] [M.musculus] Curated Ortholog /// rc_AI171982_at RG-U34C // ESTs, Moderately similar to RIKEN cDNA 4833415N24 [Mus musculus] [M.musculus] Curated Ortholog /// 94219_at MG-U74Av2 // proteasome (prosome, macropain) subunit, beta type 2 Curated Ortholog /// 1448262_at MOE430A // proteasome (prosome, macropain) subunit, beta type 2 Curated Ortholog /// aa683747_s_at Mu11KsubA // proteasome (prosome, macropain) subunit, beta type 2 Curated Ortholog" chr1p34.3 // 35124743-35152883 // - // 100 "Hs.432607 // 3 // NM_002794 // proteasome (prosome, macropain) subunit, beta type, 2 // chr1 // 35124704-35163109 // -" 200040_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_006559.1 "gb:NM_006559.1 /DEF=Homo sapiens GAP-associated tyrosine phosphoprotein p62 (Sam68) (SAM68), mRNA. /FEA=mRNA /GEN=SAM68 /PROD=GAP-associated tyrosine phosphoprotein p62(Sam68) /DB_XREF=gi:5730026 /UG=Hs.119537 GAP-associated tyrosine phosphoprotein p62 (Sam68) /FL=gb:BC000717.1 gb:M88108.1 gb:NM_006559.1" g5730026 Hs.119537.0 --- "KH domain containing, RNA binding, signal transduction associated 1" KHDRBS1 Chr:1p32 Hs.119537 10657 Q07666 /// Q8NB97 /// Q99760 --- --- ENSG00000121774 --- "NM_006559 // KH domain containing, RNA binding, signal transduction associated 1" 8283 // cell proliferation // experimental evidence /// 6397 // mRNA processing // predicted/computed /// 7165 // signal transduction // predicted/computed /// 7265 // RAS protein signal transduction // not recorded /// 7050 // cell cycle arrest // experimental evidence /// 82 // G1/S transition of mitotic cell cycle // experimental evidence --- 3729 // mRNA binding // experimental evidence /// 3727 // single-stranded RNA binding // not recorded /// 3676 // nucleic acid binding // extended:Unknown; KH; 0.01 /// 3677 // DNA binding // experimental evidence /// 3697 // single-stranded DNA binding // not recorded DNA-binding protein // experimental evidence /// RNA-binding protein // experimental evidence RNA processing/modification // predicted/computed RNA-associated // experimental evidence /// DNA-associated (direct or indirect) // experimental evidence --- --- --- --- "IPR004088 // KH domain, type 1 /// IPR004087 // KH domain /// IPR000515 // Binding-protein-dependent transport systems inner membrane component" KH // KH domain;0.01 IPB000958 // KH domain;0.0051 d1k1ga_ // d.51.1.1 // RNA splicing factor 1 ;2.09e-42 --- --- "12805185 // src associated in mitosis, 68 kDa [Mus musculus];0.0 /// 5730027 // KH domain containing, RNA binding, signal transduction associated 1; GAP-associated tyrosine phosphoprotein p62 (Sam68) [Homo sapiens];0.0" "Q9WU01 // Gene-TRE:SLM1 SLM-1. length=349;1e-120 /// Q07666 // Gene-TRE:P62 GAP-ASSOCIATED TYROSINE PHOSPHOPROTEIN P62 (SAM68). length=443;0 /// Q99M33 // Gene-TRE:SAM68 SRC ASSOCIATED IN MITOSIS, 68 KDA. length=443;0 /// Q9PTB4 // Gene-TRE:P62 GAP-ASSOCIATED PHOSPHOPROTEIN P62 (FRAGMENT). length=322;5e-99 /// Q9UJ11 // Gene-TRE:DJ240B8.1 DJ240B8.1 (NOVEL PROTEIN SIMILAR TO T-STAR, ETOILE, SAM68, SLM1 AND P62 TYROSINE PHOSPHOPROTEIN) (FRAGMENT). length=51;3e-14 /// Q99760 // SAM68DELTAKH. length=404;0 /// O75525 // Gene-TRE:T-STAR Gene-TRE:SALP T-STAR. length=346;1e-104 /// Q920F3 // NUCLEAR RNA BINDING PROTEIN SLM-1. length=349;1e-122 /// Q9R226 // Gene-TRE:ETLE Gene-TRE:SLM2 SLM-2. length=346;1e-102 /// Q91V33 // NUCLEAR RNA BINDING PROTEIN SAM68 (SRC ASSOCIATED IN MITOSIS SAM68). length=443;0 /// Q9UPA8 // Gene-TRE:SALP SAM68-LIKE PHOSPHOTYROSINE PROTEIN BETA (FRAGMENT). length=264;8e-77 /// Q9JLP1 // Gene-TRE:SLM-2 SAM68-LIKE PROTEIN SLM-2. length=346;1e-103 /// Q60735 // Gene-TRE:SAM68 P62 RAS-GAP ASSOCIATED PHOSPHOPROTEIN. length=443;0 /// O88624 // Gene-TRE:ETLE Gene-TRE:ETOILE ETOILE. length=346;1e-103 /// Q60749 // Gene-TRE:SAM68 P62. length=443;0" "rc_AA818199_at RG-U34C // 89.19% src associated in mitosis, 68 kDa Putative Ortholog /// 1379362_at RAE230B // 89.19% ESTs Putative Ortholog /// 1386896_at RAE230A // 89.19% src associated in mitosis, 68 kDa Putative Ortholog /// rc_AI044977_at RG-U34B // 89.19% src associated in mitosis, 68 kDa Putative Ortholog /// rc_AI009261_at RG-U34B // 89.19% ESTs Putative Ortholog /// rc_AA894160_at RG-U34A // 89.19% src associated in mitosis, 68 kDa Putative Ortholog /// 1398773_at RAE230A // 89.19% src associated in mitosis, 68 kDa Putative Ortholog /// u17961_s_at Mu11KsubA // KH domain containing, RNA binding, signal transduction associated 1 Curated Ortholog /// 1438461_at MOE430A // KH domain containing, RNA binding, signal transduction associated 1 Curated Ortholog /// 1418628_at MOE430A // KH domain containing, RNA binding, signal transduction associated 1 Curated Ortholog /// 1437389_x_at MOE430A // KH domain containing, RNA binding, signal transduction associated 1 Curated Ortholog /// 1418630_at MOE430A // KH domain containing, RNA binding, signal transduction associated 1 Curated Ortholog /// 1418629_a_at MOE430A // KH domain containing, RNA binding, signal transduction associated 1 Curated Ortholog /// 1438462_x_at MOE430A // KH domain containing, RNA binding, signal transduction associated 1 Curated Ortholog /// 1434541_x_at MOE430A // KH domain containing, RNA binding, signal transduction associated 1 Curated Ortholog /// 170444_i_at MG-U74Cv2 // KH domain containing, RNA binding, signal transduction associated 1 Curated Ortholog /// 101508_at MG-U74Av2 // KH domain containing, RNA binding, signal transduction associated 1 Curated Ortholog" chr1p35.1 // 31496590-31497081 // + // 100 "Hs.119537 // 3 // NM_006559 // KH domain containing, RNA binding, signal transduction associated 1 // chr1 // 31467163-31497145 // +" 200041_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004640.1 "gb:NM_004640.1 /DEF=Homo sapiens HLA-B associated transcript-1 (D6S81E), mRNA. /FEA=mRNA /GEN=D6S81E /PROD=HLA-B associated transcript-1 /DB_XREF=gi:4758111 /UG=Hs.55296 HLA-B associated transcript-1 /FL=gb:BC004350.1 gb:NM_004640.1" g4758111 Hs.55296.0 "1500074352 (3 transcripts, 1 gene cluster)" HLA-B associated transcript 1 BAT1 Chr:6p21.3 Hs.55296 7919 Q13838 --- --- ENSG00000123136 --- NM_004640 // HLA-B associated transcript 1 /// NM_080598 // HLA-B associated transcript 1 --- 5634 // nucleus // experimental evidence 4004 // ATP dependent RNA helicase // predicted/computed /// 5524 // ATP binding // extended:inferred from electronic annotation; DEAD; 4e-62 /// 4002 // adenosinetriphosphatase // predicted/computed RNA-binding protein // predicted/computed /// Hydrolase // predicted/computed --- RNA-associated // predicted/computed --- Nuclear // experimental evidence --- --- "IPR001650 // Helicase, C-terminal /// IPR001410 // DEAD/DEAH box helicase" helicase_C // Helicase conserved C-terminal domain;1.9e-25 /// DEAD // DEAD/DEAH box helicase;4e-62 "IPB000629 // ATP-dependent helicase, DEAD-box;9.6e-51" d1hv8a1 // c.37.1.13 // Putative DEAD box RNA helicase ;1.81e-57 --- --- "9790069 // HLA-B-associated transcript 1A; DNA segment, Chr 17, human D6S81E 1; nuclear RNA helicase Bat1 [Mus musculus];0.0 /// 4758112 // HLA-B associated transcript-1; DEAD-box protein; nuclear RNA helicase (DEAD family) [Homo sapiens];0.0" "O43496 // Gene-TRE:BAT1 DEAD-BOX PROTEIN (FRAGMENT). length=284;1e-160 /// HE47_DROME // SW:Q9VMQ1 Gene:HEL25E Gene:DBP25F Gene:WM6 Gene:CG7269 PROBABLE ATP-DEPENDENT RNA HELICASE WM6. length=424;0 /// Q9Z1N5 // Gene-TRE:D17H6S81E-1 Gene-TRE:BAT1 NUCLEAR RNA HELICASE BAT1 (SIMILAR TO DNA SEGMENT, CHR 17, HUMAN D6S81E 1). length=428;0 /// HE47_RAT // Gene:BAT1 PROBABLE ATP-DEPENDENT RNA HELICASE P47. length=428;0 /// HE47_HUMAN // Gene:BAT1 Probable ATP-dependent RNA helicase p47 (HLA-B associated transcript- 1). length=428;0 /// O70498 // NUCLEAR RNA HELICASE. length=427;0 /// HE47_CAEEL // SW:Q17323 Gene:HEL Gene:C26D10.2 PROBABLE ATP-DEPENDENT RNA HELICASE P47 HOMOLOG. length=425;0 /// Q8VDW0 // NUCLEAR RNA HELICASE, DECD VARIANT OF DEAD BOX FAMILY. length=427;0 /// Q9ZS06 // Gene-TRE:RH15 RNA HELICASE (FRAGMENT). length=451;1e-176 /// Q9BVP6 // SIMILAR TO NUCLEAR RNA HELICASE, DECD VARIANT OF DEAD BOX FAMILY. length=427;0 /// O00148 // NUCLEAR RNA HELICASE. length=427;0" 1448221_at MOE430A // HLA-B-associated transcript 1A Curated Ortholog /// 1447779_x_at MOE430B // HLA-B-associated transcript 1A Curated Ortholog /// 1437367_at MOE430A // HLA-B-associated transcript 1A Curated Ortholog /// 115637_at MG-U74Bv2 // HLA-B-associated transcript 1A Curated Ortholog /// 160384_at MG-U74Av2 // HLA-B-associated transcript 1A Curated Ortholog /// Msa.4225.0_f_at Mu11KsubB // HLA-B-associated transcript 1A Curated Ortholog /// 1437984_x_at MOE430A // HLA-B-associated transcript 1A Curated Ortholog chr6p21.33 // 31552085-31552876 // - // 99 --- 200042_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_014306.1 "gb:NM_014306.1 /DEF=Homo sapiens hypothetical protein (HSPC117), mRNA. /FEA=mRNA /GEN=HSPC117 /PROD=similar to C. elegens hypothetical 55.2 kDprotein F16A11.2 /DB_XREF=gi:7657014 /UG=Hs.10729 hypothetical protein /FL=gb:BC000151.1 gb:BC002970.1 gb:AF161466.1 gb:NM_014306.1 gb:AF155658.1" g7657014 Hs.10729.0 --- hypothetical protein HSPC117 HSPC117 Chr:22q12 Hs.10729 51493 Q9BWL4 /// Q9NTH1 /// Q9P037 /// Q9P0J3 /// Q9Y3I0 --- --- ENSG00000100220 --- NM_014306 // similar to C. elegens hypothetical 55.2 kD protein F16A11.2 --- --- --- --- --- --- --- --- --- --- IPR001233 // Protein of unknown function UPF0027 UPF0027 // Uncharacterized protein family UPF0027;5.2e-294 IPB001233 // Uncharacterized protein family UPF0027;8.5e-105 --- --- --- 12652799 // hypothetical protein [Homo sapiens];0.0 /// 7657015 // similar to C. elegens hypothetical 55.2 kD protein F16A11.2 [Homo sapiens];0.0 Q9VIW7 // Gene-TRE:CG9987 CG9987 PROTEIN. length=506;0 /// YT6J_CAEEL // Gene:F16A11.2 Hypothetical 55.2 kDa protein F16A11.2 in chromosome I. length=505;0 /// Q9BWL4 // HYPOTHETICAL 55.2 KDA PROTEIN. length=505;0 /// Q9NTH1 // Gene-TRE:DKFZP434I1614 HYPOTHETICAL 21.4 KDA PROTEIN (FRAGMENT). length=197;1e-110 /// Q99LF4 // HYPOTHETICAL 55.2 KDA PROTEIN. length=505;0 /// Q9Y3I0 // HYPOTHETICAL 55.2 KDA PROTEIN. length=505;0 /// Q9P037 // HSPC117. length=505;0 /// Q9P0J3 // PUTATIVE 55 KDA PROTEIN. length=505;0 "rc_AA849390_at RG-U34B // 90.56% ESTs Putative Ortholog /// 1382867_at RAE230B // 90.56% ESTs Putative Ortholog /// 1420129_s_at MOE430A // DNA segment, Chr 10, Wayne State University 52, expressed Curated Ortholog /// 1420130_s_at MOE430A // DNA segment, Chr 10, Wayne State University 52, expressed Curated Ortholog /// 161197_r_at MG-U74Av2 // DNA segment, Chr 10, Wayne State University 52, expressed Curated Ortholog /// 101960_at MG-U74Av2 // DNA segment, Chr 10, Wayne State University 52, expressed Curated Ortholog /// 1423880_at MOE430A // DNA segment, Chr 10, Wayne State University 52, expressed Curated Ortholog /// aa409545_rc_s_at Mu11KsubA // DNA segment, Chr 10, Wayne State University 52, expressed Curated Ortholog" chr22q12.3 // 29479659-29484321 // - // 100 Hs.10729 // 9 // NM_014306 // hypothetical protein HSPC117 // chr22 // 29479613-29504265 // - 200043_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004450.1 "gb:NM_004450.1 /DEF=Homo sapiens enhancer of rudimentary (Drosophila) homolog (ERH), mRNA. /FEA=mRNA /GEN=ERH /PROD=enhancer of rudimentary (Drosophila) homolog /DB_XREF=gi:4758301 /UG=Hs.118757 enhancer of rudimentary (Drosophila) homolog /FL=gb:D85758.1 gb:U66871.1 gb:NM_004450.1" g4758301 Hs.118757.0 --- enhancer of rudimentary homolog (Drosophila) ERH Chr:14q24.1 Hs.433413 2079 Q14259 --- --- ENSG00000100632 --- NM_004450 // enhancer of rudimentary homolog "74 // regulation of cell cycle // predicted/computed /// 6205 // pyrimidine metabolism // predicted/computed /// 6139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolism // predicted/computed" --- --- --- --- --- --- --- --- --- IPR000781 // Enhancer of rudimentary ER // Enhancer of rudimentary;3.7e-85 IPB000781 // Enhancer of rudimentary;4.7e-68 --- --- --- 4758302 // enhancer of rudimentary homolog [Homo sapiens];1e-56 /// 18858333 // enhancer of rudimentary [Danio rerio];1e-56 ERH_BRARE // Gene:E(R) ENHANCER OF RUDIMENTARY HOMOLOG. length=104;2e-58 /// ERH_HUMAN // SW:P70659 Gene:ERH Enhancer of rudimentary homolog. length=104;2e-57 /// ERH_HUMAN // SW:P70659 Gene:ERH Enhancer of rudimentary homolog. length=104;4e-57 "1388328_at RAE230A // 88.45% ESTs, Highly similar to eukaryotic translation initiation factor 3, subunit 2 (beta, 36kD); TGF-beta receptor binding protein; DNA segment, Chr 4, ERATO Doi 632, expressed [Mus musculus] [M.musculus] Putative Ortholog /// rc_AI176492_at RG-U34C // 88.45% ESTs, Highly similar to eukaryotic translation initiation factor 3, subunit 2 (beta, 36kD); TGF-beta receptor binding protein; DNA segment, Chr 4, ERATO Doi 632, expressed [Mus musculus] [M.musculus] Putative Ortholog /// d73368_s_at Mu11KsubA // enhancer of rudimentary homolog (Drosophila) Curated Ortholog /// 170768_at MG-U74Cv2 // enhancer of rudimentary homolog (Drosophila) Curated Ortholog /// 1430536_a_at MOE430A // enhancer of rudimentary homolog (Drosophila) Curated Ortholog /// 1448416_at MOE430A // hypothetical protein LOC223886 Curated Ortholog /// D18292_rc_f_at Mu11KsubA // hypothetical protein LOC223886 Curated Ortholog /// 170035_at MG-U74Cv2 // enhancer of rudimentary homolog (Drosophila) Curated Ortholog /// 94040_at MG-U74Av2 // enhancer of rudimentary homolog (Drosophila) Curated Ortholog" chr14q24.1 // 63643301-63650127 // - // 99 Hs.433413 // 3 // NM_004450 // enhancer of rudimentary homolog (Drosophila) // chr14 // 63643262-63661439 // - 200044_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_003769.1 "gb:NM_003769.1 /DEF=Homo sapiens splicing factor, arginineserine-rich 9 (SFRS9), mRNA. /FEA=mRNA /GEN=SFRS9 /PROD=splicing factor, arginineserine-rich 9 /DB_XREF=gi:4506902 /UG=Hs.77608 splicing factor, arginineserine-rich 9 /FL=gb:U30825.1 gb:NM_003769.1" g4506902 Hs.77608.0 --- "splicing factor, arginine/serine-rich 9" SFRS9 Chr:12q24.31 Hs.77608 8683 Q13242 --- --- ENSG00000111786 --- "NM_003769 // splicing factor, arginine/serine-rich 9" 6376 // mRNA splice site selection // experimental evidence /// 6397 // mRNA processing // experimental evidence 5634 // nucleus // not recorded 3676 // nucleic acid binding // extended:Unknown; rrm; 1.3e-21 /// 8248 // pre-mRNA splicing factor // experimental evidence RNA-binding protein // predicted/computed /// Spliceosomal subunit // experimental evidence RNA processing/modification // experimental evidence /// RNA splicing // experimental evidence RNA-associated // experimental evidence --- Nuclear // experimental evidence --- --- IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;1.9e-37" --- d1urna_ // d.58.7.1 // Splicesomal U1A protein ;1.94e-19 --- --- "4506903 // splicing factor, arginine/serine-rich 9 [Homo sapiens];e-132 /// 13385016 // splicing factor, arginine/serine rich 9 (25 kDa) [Mus musculus];e-130" "SFR9_HUMAN // Gene:SFRS9 Gene:SRP30C Splicing factor, arginine/serine-rich 9 (Pre-mRNA splicing factor SRp30C). length=221;1e-133 /// Q9D0B0 // Gene-TRE:2610029M16RIK 2610029M16RIK PROTEIN (RIKEN CDNA 2610029M16 GENE). length=222;1e-131 /// Q9CRN3 // Gene-TRE:2610029M16RIK 2610029M16RIK PROTEIN (FRAGMENT). length=190;1e-112" "Msa.15973.0_s_at Mu11KsubB // splicing factor, arginine/serine rich 9 (25 kDa) Curated Ortholog /// 96834_at MG-U74Av2 // splicing factor, arginine/serine rich 9 (25 kDa) Curated Ortholog /// 1417727_at MOE430A // splicing factor, arginine/serine rich 9 (25 kDa) Curated Ortholog" chr12q24.31 // 120426184-120428517 // - // 94 "Hs.77608 // 2 // NM_003769 // splicing factor, arginine/serine-rich 9 // chr12 // 120426149-120434143 // -" 200045_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001090.1 "gb:NM_001090.1 /DEF=Homo sapiens ATP-binding cassette, sub-family F (GCN20), member 1 (ABCF1), mRNA. /FEA=mRNA /GEN=ABCF1 /PROD=ATP-binding cassette, sub-family F, member 1 /DB_XREF=gi:10947134 /UG=Hs.9573 ATP-binding cassette, sub-family F (GCN20), member 1 /FL=gb:NM_001090.1 gb:AF027302.1" g10947134 Hs.9573.0 --- "ATP-binding cassette, sub-family F (GCN20), member 1" ABCF1 Chr:6p21.33 Hs.9573 23 O14897 /// Q8NE71 --- --- ENSG00000137335 --- "NM_001090 // ATP-binding cassette, sub-family F, member 1" 6412 // protein biosynthesis // predicted/computed /// 6954 // inflammatory response // predicted/computed --- "5524 // ATP binding // predicted/computed /// 8135 // translation factor, nucleic acid binding // predicted/computed /// 4009 // ATP-binding cassette (ABC) transporter // predicted/computed" Hydrolase // predicted/computed /// ATP-binding cassette // predicted/computed Protein synthesis // predicted/computed --- --- --- --- --- IPR003439 // ABC transporter ABC_tran // ABC transporter;6.7e-73 IPB000795 // GTP-binding elongation factor;0.0077 --- --- --- "10947135 // ATP-binding cassette, sub-family F, member 1; ATP-binding cassette 50 (TNF-alpha stimulated); ATP-binding cassette 50 [Homo sapiens];0.0 /// 21759807 // Similar to ATP-binding cassette, sub-family F (GCN20), member 1 [Homo sapiens];0.0" Q99K92 // HYPOTHETICAL 12.3 KDA PROTEIN (FRAGMENT). length=111;1e-55 /// Q9ERQ2 // ABC50 (FRAGMENT). length=815;0 /// O14897 // Gene-TRE:ABC50 TNF-ALPHA STIMULATED ABC PROTEIN (TNFALPHA-INDUCIBLE ATP-BINDING PROTEIN). length=807;0 "rc_AI013494_at RG-U34B // 85.15% ATP-binding cassette, sub-family F (GCN20), member 1 Putative Ortholog /// rc_AA944558_at RG-U34B // 85.15% ATP-binding cassette, sub-family F (GCN20), member 1 Putative Ortholog /// 1398876_at RAE230A // 85.15% ATP-binding cassette, sub-family F (GCN20), member 1 Putative Ortholog /// Msa.19851.0_s_at Mu11KsubB // 85.63% hypothetical protein LOC224742 Putative Ortholog /// 1427444_at MOE430A // 85.63% hypothetical protein LOC224742 Putative Ortholog /// 170555_at MG-U74Cv2 // 85.63% hypothetical protein LOC224742 Putative Ortholog /// 1452429_s_at MOE430A // 85.63% hypothetical protein LOC224742 Putative Ortholog /// 1420157_s_at MOE430A // 85.63% hypothetical protein LOC224742 Putative Ortholog /// aa199380_s_at Mu11KsubA // 85.63% hypothetical protein LOC224742 Putative Ortholog /// 1426921_at MOE430A // 85.63% hypothetical protein LOC224742 Putative Ortholog /// 97330_at MG-U74Av2 // 85.63% hypothetical protein LOC224742 Putative Ortholog" chr6p21.33 // 30614217-30614715 // + // 100 "Hs.9573 // 4 // NM_001090 // ATP-binding cassette, sub-family F (GCN20), member 1 // chr6 // 30594893-30614796 // +" 200046_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001344.1 "gb:NM_001344.1 /DEF=Homo sapiens defender against cell death 1 (DAD1), mRNA. /FEA=mRNA /GEN=DAD1 /PROD=defender against cell death 1 /DB_XREF=gi:4503252 /UG=Hs.82890 defender against cell death 1 /FL=gb:NM_001344.1 gb:D15057.1" g4503252 Hs.82890.0 --- defender against cell death 1 DAD1 Chr:14q11-q12 Hs.82890 1603 P46966 --- --- ENSG00000129562 --- NM_001344 // defender against cell death 1 6486 // protein amino acid glycosylation // experimental evidence /// 6916 // anti-apoptosis // experimental evidence 8250 // oligosaccharyl transferase complex // experimental evidence /// 5792 // microsome // experimental evidence 8189 // apoptosis inhibitor // not recorded Transferase // predicted/computed --- --- Cell death/Apoptosis // not recorded Microsomal fraction // experimental evidence --- --- IPR003038 // Defender against death DAD protein DAD // DAD family;2.5e-74 IPB003038 // DAD family;4.8e-60 --- numtm:3;Nin-prob:0.19983;type:signal;type:tm;type:tm; --- 1905979 // oligosaccharyltransferase subunit homolog [Mus musculus];1e-57 /// 4503253 // defender against cell death 1 [Homo sapiens];5e-58 DAD1_HUMAN // SW:P46968 SW:O08552 SW:O70364 SW:Q96GB7 Gene:DAD1 Defender against cell death 1 (DAD-1). length=113;2e-58 /// DAD1_HUMAN // SW:P46968 SW:O08552 SW:O70364 SW:Q96GB7 Gene:DAD1 Defender against cell death 1 (DAD-1). length=113;8e-59 /// DAD1_HUMAN // SW:P46968 SW:O08552 SW:O70364 SW:Q96GB7 Gene:DAD1 Defender against cell death 1 (DAD-1). length=113;3e-59 /// DAD1_CAEEL // Gene:DAD-1 Gene:F57B10.10 Defender against cell death 1 (Protein dad-1). length=113;2e-37 "1367465_at RAE230A // 91.52% defender against cell death 1 Putative Ortholog /// rc_AI013627_at RG-U34A // 91.52% defender against cell death 1 Putative Ortholog /// 1373866_at RAE230A // 91.52% ESTs, Moderately similar to hypothetical protein FLJ13448 [Homo sapiens] [H.sapiens] Putative Ortholog /// rc_AI228596_at RG-U34C // 91.52% ESTs, Moderately similar to hypothetical protein FLJ13448 [Homo sapiens] [H.sapiens] Putative Ortholog /// Msa.23697.0_s_at Mu11KsubB // defender against cell death 1 Curated Ortholog /// 96008_at MG-U74Av2 // defender against cell death 1 Curated Ortholog /// Msa.10488.0_f_at Mu11KsubB // defender against cell death 1 Curated Ortholog /// 167324_at MG-U74Cv2 // defender against cell death 1 Curated Ortholog /// 1454860_x_at MOE430A // defender against cell death 1 Curated Ortholog /// Msa.16315.0_f_at Mu11KsubB // defender against cell death 1 Curated Ortholog /// 161655_at MG-U74Av2 // defender against cell death 1 Curated Ortholog /// 161896_at MG-U74Av2 // defender against cell death 1 Curated Ortholog /// Msa.5804.0_at Mu11KsubB // defender against cell death 1 Curated Ortholog /// 162175_at MG-U74Av2 // defender against cell death 1 Curated Ortholog /// 1418528_a_at MOE430A // defender against cell death 1 Curated Ortholog /// Msa.10488.0_i_at Mu11KsubB // defender against cell death 1 Curated Ortholog" chr14q11.2 // 16821203-16845326 // - // 99 "Hs.381722 // 1 // BC013646 // Defender against cell death 1 [Homo sapiens], mRNA sequence // chr14 // 16821105-16845437 // - /// Hs.82890 // 3 // NM_001344 // defender against cell death 1 // chr14 // 16821107-16845430 // -" 200047_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_003403.2 "gb:NM_003403.2 /DEF=Homo sapiens YY1 transcription factor (YY1), mRNA. /FEA=mRNA /GEN=YY1 /PROD=YY1 transcription factor /DB_XREF=gi:6042207 /UG=Hs.97496 YY1 transcription factor /FL=gb:M77698.1 gb:M76541.1 gb:NM_003403.2" g6042207 Hs.97496.0 "1500074353 (1 transcript, 1 gene cluster)" YY1 transcription factor YY1 Chr:14q Hs.97496 7528 AAH37308 /// P25490 --- --- ENSG00000100811 --- NM_003403 // YY1 transcription factor 6357 // regulation of transcription from Pol II promoter // experimental evidence /// 6960 // antimicrobial humoral response (sensu Invertebrata) // predicted/computed --- 3713 // transcription co-activator // predicted/computed /// 3700 // transcription factor // experimental evidence /// 8270 // zinc binding // predicted/computed /// 3714 // transcription co-repressor // experimental evidence Inhibitor or repressor // experimental evidence /// DNA-binding protein // experimental evidence /// Activator // predicted/computed Pol II transcription // not recorded DNA-associated (direct or indirect) // not recorded Pathogenic Invasion // not recorded /// Anti-pathogen response // not recorded --- --- --- "IPR000822 // Zn-finger, C2H2 type" "zf-C2H2 // Zinc finger, C2H2 type;3.8e-28" IPB001541 // SUR2-type hydroxylase/desaturase catalytic domain;0.0096 --- --- --- 4507955 // YY1 transcription factor [Homo sapiens];0.0 /// 88893 // transcription repressor protein YY1 - human;0.0 TYY1_HUMAN // SW:Q14935 Gene:YY1 Transcriptional repressor protein YY1 (Yin and yang 1) (YY-1) (Delta transcription factor) (NF-E1). length=414;0 /// TYY1_MOUSE // Gene:YY1 Gene:UCRBP TRANSCRIPTIONAL REPRESSOR PROTEIN YY1 (YIN AND YANG 1) (YY-1) (DELTA TRANSCRIPTION FACTOR) (NF-E1) (UCR-MOTIF DNA-BINDING PROTEIN). length=414;0 98767_at MG-U74Av2 // YY1 transcription factor Curated Ortholog /// 1422569_at MOE430A // YY1 transcription factor Curated Ortholog /// 1457834_at MOE430A // YY1 transcription factor Curated Ortholog /// 1435824_at MOE430A // YY1 transcription factor Curated Ortholog /// 99020_at MG-U74Av2 // YY1 transcription factor Curated Ortholog /// m73963_s_at Mu11KsubA // YY1 transcription factor Curated Ortholog /// AA137984_at Mu11KsubA // YY1 transcription factor Curated Ortholog /// 1422570_at MOE430A // YY1 transcription factor Curated Ortholog chr14q32.2 // 94560146-94560425 // + // 100 Hs.97496 // 4 // NM_003403 // YY1 transcription factor // chr14 // 94520757-94560460 // + 200048_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_006694.1 "gb:NM_006694.1 /DEF=Homo sapiens jumping translocation breakpoint (JTB), mRNA. /FEA=mRNA /GEN=JTB /PROD=jumping translocation breakpoint /DB_XREF=gi:5729888 /UG=Hs.6396 jumping translocation breakpoint /FL=gb:BC000499.1 gb:BC001363.1 gb:BC000996.2 gb:BC001667.1 gb:AB016488.1 gb:AF131797.1 gb:NM_006694.1 gb:AF115850.2" g5729888 Hs.6396.0 "1500074354 (3 transcripts, 2 gene clusters)" jumping translocation breakpoint JTB Chr:1q21 Hs.6396 10899 O76095 /// Q9P0Q4 --- --- ENSG00000143543 --- NM_006694 // jumping translocation breakpoint 7048 // oncogenesis // predicted/computed 5624 // membrane fraction // predicted/computed /// 5887 // integral to plasma membrane // predicted/computed --- --- --- Integral membrane // not recorded --- Unspecified membrane // not recorded --- --- --- --- --- --- numtm:1;Nin-prob:0.04285;type:tm; --- 11139303 // jumping translocation breakpoint [Rattus norvegicus];1e-70 /// 5729889 // jumping translocation breakpoint; PAR protein [Homo sapiens];6e-82 O95442 // PAR PROTEIN (HJTB). length=146;4e-82 /// JTB_RAT // Gene:JTB JTB PROTEIN PRECURSOR. length=146;1e-71 /// Q9D0T9 // Gene-TRE:JTB JUMPING TRANSLOCATION BREAKPOINT. length=146;9e-70 /// JTB_MOUSE // Gene:JTB JTB PROTEIN PRECURSOR. length=146;8e-71 /// JTB_HUMAN // SW:O95442 Gene:JTB JTB protein precursor (Jumping translocation breakpoint protein) (Prostate androgen regulated protein) (PAR protein). length=146;4e-82 102790_at MG-U74Av2 // jumping translocation breakpoint Curated Ortholog /// 1424283_at MOE430A // jumping translocation breakpoint Curated Ortholog /// AA261113_at Mu11KsubA // jumping translocation breakpoint Curated Ortholog chr1q21.3 // 149678154-149680744 // - // 100 Hs.6396 // 11 // NM_006694 // jumping translocation breakpoint // chr1 // 149678067-149681240 // - 200049_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_007067.1 "gb:NM_007067.1 /DEF=Homo sapiens histone acetyltransferase (HBOA), mRNA. /FEA=mRNA /GEN=HBOA /PROD=histone acetyltransferase /DB_XREF=gi:5901961 /UG=Hs.21907 histone acetyltransferase /FL=gb:AF074606.1 gb:AF140360.1 gb:NM_007067.1" g5901961 Hs.21907.0 --- histone acetyltransferase HBOA Chr:17q21.32 Hs.21907 11143 O95251 /// Q96I61 --- --- ENSG00000136504 --- NM_007067 // histone acetyltransferase "6260 // DNA replication // predicted/computed /// 6355 // regulation of transcription, DNA-dependent // predicted/computed" 5634 // nucleus // predicted/computed 5515 // protein binding // experimental evidence /// 4406 // H3/H4 histone acetyltransferase // experimental evidence /// 3700 // transcription factor // extended:inferred from electronic annotation; zf-C2HC; 2.1e-09 Transferase // experimental evidence DNA synthesis // predicted/computed /// Chromatin/chromosome structure // experimental evidence DNA-associated (direct or indirect) // experimental evidence --- Nuclear // predicted/computed --- --- "IPR002717 // MOZ/SAS-like protein /// IPR002515 // Zn-finger, C2HC type /// IPR000822 // Zn-finger, C2H2 type" "zf-C2HC // Zinc finger, C2HC type;2.1e-09 /// zf-C2H2 // Zinc finger, C2H2 type;0.84 /// MOZ_SAS // MOZ/SAS family;2.2e-137" "IPB000822 // Zinc finger, C2H2 type;0.0059" d1fy7a_ // d.108.1.1 // Histone acetyltransferase ESA1 ;4.88e-119 --- --- 5901962 // histone acetyltransferase [Homo sapiens];0.0 /// 20345236 // similar to histone acetyltransferase [Mus musculus];0.0 O95251 // Gene-TRE:HBO1 Gene-TRE:HBOA Gene-TRE:MYST2 HISTONE ACETYLTRANSFERASE (HISTONE ACETYLTRANSFERASE MYST2). length=611;0 /// Q96I61 // UNKNOWN (PROTEIN FOR MGC:14169). length=276;1e-165 rc_AA800202_at RG-U34A // 82.69% ESTs Putative Ortholog /// 1392929_at RAE230A // 82.69% ESTs Putative Ortholog /// 1433433_at MOE430A // 81.21% similar to histone acetyltransferase [Homo sapiens] Putative Ortholog /// AA733256_s_at Mu11KsubA // 81.21% similar to histone acetyltransferase [Homo sapiens] Putative Ortholog /// 96178_at MG-U74Av2 // 81.21% similar to histone acetyltransferase [Homo sapiens] Putative Ortholog chr17q21.33 // 50385972-50386483 // + // 100 /// chrXq21.33 // 92168496-92169007 // - // 98 Hs.21907 // 7 // NM_007067 // histone acetyltransferase // chr17 // 50346227-50386531 // + 200050_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_007145.1 "gb:NM_007145.1 /DEF=Homo sapiens zinc finger protein 146 (ZNF146), mRNA. /FEA=mRNA /GEN=ZNF146 /PROD=zinc finger protein 146 /DB_XREF=gi:6005965 /UG=Hs.301819 zinc finger protein 146 /FL=gb:BC005154.1 gb:NM_007145.1" g6005965 Hs.301819.0 --- zinc finger protein 146 ZNF146 Chr:19q13.1 Hs.301819 7705 Q15072 /// Q9BSB2 --- --- ENSG00000167635 --- NM_007145 // zinc finger protein 146 "6355 // regulation of transcription, DNA-dependent // predicted/computed" 5634 // nucleus // experimental evidence 8201 // heparin binding // experimental evidence /// 3677 // DNA binding // experimental evidence /// 8270 // zinc binding // experimental evidence --- --- --- --- Nuclear // experimental evidence --- --- "IPR000822 // Zn-finger, C2H2 type" "zf-C2H2 // Zinc finger, C2H2 type;1.3e-82" IPB001275 // DM DNA binding domain;1.5e-06 --- --- --- 6005966 // zinc finger protein 146 [Homo sapiens];0.0 /// 2501710 // Zinc finger protein OZF;e-177 "P97660 // Gene-TRE:DZF4 ZINC FINGER PROTEIN 4 (FRAGMENT). length=63;2e-32 /// OZF_HUMAN // Gene:ZNF146 Gene:OZF Zinc finger protein OZF. length=292;0 /// P97657 // Gene-TRE:DZF1 ZINC FINGER PROTEIN 1 (FRAGMENT). length=71;7e-22 /// Q96MQ2 // CDNA FLJ32053 FIS, CLONE NTONG2001550, MODERATELY SIMILAR TO ZINC FINGER PROTEIN 135. length=342;1e-132 /// Q9Z0Q5 // Gene-TRE:ZFP146 Gene-TRE:OZF OZF PROTEIN. length=292;1e-174 /// Q62517 // Gene-TRE:ZFP63 Gene-TRE:ZFP ZINC FINGER PROTEIN (FRAGMENT). length=184;2e-97 /// P97655 // Gene-TRE:AZF16 ZINC FINGER PROTEIN 16 (FRAGMENT). length=56;2e-15 /// P97663 // Gene-TRE:DZF7 ZINC FINGER PROTEIN 7 (FRAGMENT). length=48;1e-16 /// P97653 // Gene-TRE:AZF14 ZINC FINGER PROTEIN 14 (FRAGMENT). length=58;2e-15 /// P97661 // Gene-TRE:DZF5 ZINC FINGER PROTEIN 5 (FRAGMENT). length=56;5e-22 /// P97658 // Gene-TRE:DZF2 ZINC FINGER PROTEIN 2 (FRAGMENT). length=52;1e-11 /// Q96MM9 // CDNA FLJ32133 FIS, CLONE PEBLM2000308, MODERATELY SIMILAR TO ZINC FINGER PROTEIN 135. length=338;1e-117 /// Q62512 // ZINC FINGER PROTEIN (FRAGMENT). length=346;1e-115 /// P97672 // Gene-TRE:DZF16 ZINC FINGER PROTEIN 16 (FRAGMENT). length=56;2e-16" --- --- --- 200051_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_005146.1 "gb:NM_005146.1 /DEF=Homo sapiens squamous cell carcinoma antigen recognised by T cells (SART1), mRNA. /FEA=mRNA /GEN=SART1 /PROD=squamous cell carcinoma antigen recognised by Tcells /DB_XREF=gi:10863888 /UG=Hs.288319 squamous cell carcinoma antigen recognised by T cells /FL=gb:NM_005146.1 gb:BC001058.1 gb:AB006198.1" g10863888 Hs.288319.0 --- squamous cell carcinoma antigen recognised by T cells SART1 Chr:11q13.1 Hs.288319 9092 O43290 --- --- ENSG00000175467 --- NM_005146 // squamous cell carcinoma antigen recognized by T cells 1 --- 5737 // cytoplasm // experimental evidence /// 5829 // cytosol // experimental evidence 8222 // tumor antigen // experimental evidence --- --- --- --- Cytoplasmic // experimental evidence --- --- IPR005011 // SART-1 protein SART-1 // SART-1 family;0 --- --- --- --- 8394236 // squamous cell carcinoma antigen recognized by T-cells 1; squamous cell carcinoma antigen recognized by T-cells [Mus musculus];0.0 /// 10863889 // squamous cell carcinoma antigen recognized by T cells 1; U4/U6.U5 tri-snRNP-associated 110 kDa protein; IgE autoantigen; SART1(259) protein; SART1(800) protein [Homo sapiens];0.0 Q9Z315 // Gene-TRE:SART1 Gene-TRE:MSART-1 MSART-1(806). length=806;0 /// Q9R270 // Gene-TRE:SART1 Gene-TRE:HAF HYPOXIA ASSOCIATED FACTOR. length=806;0 /// Q9Z314 // Gene-TRE:RSALT-1 RSALT-1(806). length=806;0 /// O43290 // SART-1 (SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY T CELLS) (U4/U6.U5 TRI-SNRNP-ASSOCIATED 110 KDA PROTEIN). length=800;0 /// Q9R1I9 // Gene-TRE:SART1 SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNIZED BY T CELLS (FRAGMENT). length=108;1e-57 rc_AA925083_at RG-U34B // 87.05% ESTs Putative Ortholog /// 1387012_at RAE230A // 87.05% squamous cell carcinoma antigen recognized by T-cells 1 Putative Ortholog /// AB014722_g_at RG-U34A // 87.05% squamous cell carcinoma antigen recognized by T-cells 1 Putative Ortholog /// rc_AI228721_at RG-U34C // 87.05% squamous cell carcinoma antigen recognized by T-cells 1 Putative Ortholog /// 1376235_at RAE230A // 87.05% ESTs Putative Ortholog /// AB014722_at RG-U34A // 87.05% squamous cell carcinoma antigen recognized by T-cells 1 Putative Ortholog /// 108886_at MG-U74Bv2 // 89.9% RIKEN cDNA C230075L19 gene Putative Ortholog /// 138113_at MG-U74Cv2 // 89.9% RIKEN cDNA C230075L19 gene Putative Ortholog /// 1456771_at MOE430B // 89.9% RIKEN cDNA C230075L19 gene Putative Ortholog /// 165353_f_at MG-U74Bv2 // squamous cell carcinoma antigen recognized by T-cells 1 Curated Ortholog /// 1448658_at MOE430A // squamous cell carcinoma antigen recognized by T-cells 1 Curated Ortholog /// 98449_at MG-U74Av2 // squamous cell carcinoma antigen recognized by T-cells 1 Curated Ortholog chr11q13.1 // 67425918-67427927 // + // 100 Hs.288319 // 6 // NM_005146 // squamous cell carcinoma antigen recognised by T cells // chr11 // 67410869-67427986 // + 200052_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004515.1 "gb:NM_004515.1 /DEF=Homo sapiens interleukin enhancer binding factor 2, 45kD (ILF2), mRNA. /FEA=mRNA /GEN=ILF2 /PROD=interleukin enhancer binding factor 2, 45kD /DB_XREF=gi:4758601 /UG=Hs.75117 interleukin enhancer binding factor 2, 45kD /FL=gb:BC000382.1 gb:NM_004515.1 gb:U10323.1" g4758601 Hs.75117.0 "1500074355 (2 transcripts, 1 gene cluster)" "interleukin enhancer binding factor 2, 45kDa" ILF2 Chr:1q21.3 Hs.75117 3608 Q12905 /// Q9BWD4 /// Q9P1N0 --- --- ENSG00000143621 --- NM_004515 // interleukin enhancer binding factor 2 --- 5634 // nucleus // experimental evidence 3702 // RNA polymerase II transcription factor // predicted/computed DNA-binding protein // not recorded Pol II transcription // not recorded DNA-associated (direct or indirect) // not recorded --- Nuclear // experimental evidence --- --- IPR006116 // 2-5 oligoadenylate synthetase ubiquitin-like domain --- IPB001797 // 2'-5'-oligoadenylate synthetase;0.0085 --- --- --- 1082855 // transcription factor NF-AT 45K chain - human;0.0 /// 13385872 // interleukin enhancer binding factor 2 [Mus musculus];0.0 Q12905 // NF45 PROTEIN. length=406;0 "rc_AA859533_at RG-U34A // 91.13% ESTs, Moderately similar to TUB_RAT TUBBY PROTEIN HOMOLOG [R.norvegicus] Putative Ortholog /// 1393071_at RAE230A // 91.13% ESTs, Moderately similar to TUB_RAT TUBBY PROTEIN HOMOLOG [R.norvegicus] Putative Ortholog /// 1417949_at MOE430A // interleukin enhancer binding factor 2 Curated Ortholog /// 171016_at MG-U74Cv2 // interleukin enhancer binding factor 2 Curated Ortholog /// 1417948_s_at MOE430A // interleukin enhancer binding factor 2 Curated Ortholog" --- --- 200053_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004890.1 "gb:NM_004890.1 /DEF=Homo sapiens sperm associated antigen 7 (SPAG7), mRNA. /FEA=mRNA /GEN=SPAG7 /PROD=sperm associated antigen 7 /DB_XREF=gi:4757715 /UG=Hs.90436 sperm associated antigen 7 /FL=gb:AF047437.1 gb:NM_004890.1" g4757715 Hs.90436.0 --- sperm associated antigen 7 SPAG7 Chr:17p13.2 Hs.90436 9552 O75391 /// Q96EU5 --- --- ENSG00000091640 --- NM_004890 // sperm associated antigen 7 --- --- 3676 // nucleic acid binding // extended:Unknown; R3H; 1.4e-16 --- --- --- --- --- --- --- IPR001374 // Single-stranded nucleic acid binding (R3H) R3H // R3H domain;1.4e-16 IPB000967 // Zinc finger NF-X1 type;0.00039 --- --- --- 4757716 // sperm associated antigen 7; sperm acrosomal protein [Homo sapiens];e-166 /// 15080361 // Similar to sperm associated antigen 7 [Homo sapiens];e-125 O75391 // SPERM ACROSOMAL PROTEIN. length=293;1e-167 /// Q96EU5 // SIMILAR TO SPERM ASSOCIATED ANTIGEN 7. length=227;1e-126 c76581_rc_at Mu11KsubA // 85.65% hypothetical protein 5730443G10 Putative Ortholog /// 1433940_at MOE430A // 85.65% hypothetical protein 5730443G10 Putative Ortholog /// 163117_at MG-U74Bv2 // 85.65% hypothetical protein 5730443G10 Putative Ortholog /// 1421986_at MOE430A // 85.65% hypothetical protein 5730443G10 Putative Ortholog /// 93832_at MG-U74Av2 // 85.65% hypothetical protein 5730443G10 Putative Ortholog /// 1455108_at MOE430B // 85.65% hypothetical protein 5730443G10 Putative Ortholog chr17p13.2 // 5200475-5201113 // - // 100 Hs.90436 // 4 // NM_004890 // sperm associated antigen 7 // chr17 // 5200455-5209043 // - 200054_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_003904.1 "gb:NM_003904.1 /DEF=Homo sapiens zinc finger protein 259 (ZNF259), mRNA. /FEA=mRNA /GEN=ZNF259 /PROD=zinc finger protein 259 /DB_XREF=gi:4508020 /UG=Hs.7165 zinc finger protein 259 /FL=gb:BC004256.1 gb:AF019767.1 gb:NM_003904.1" g4508020 Hs.7165.0 --- zinc finger protein 259 ZNF259 Chr:11q23.3 Hs.7165 8882 O75312 --- --- ENSG00000109917 --- NM_003904 // zinc finger protein 259 8283 // cell proliferation // experimental evidence /// 7165 // signal transduction // predicted/computed 5737 // cytoplasm // experimental evidence /// 5730 // nucleolus // experimental evidence /// 5634 // nucleus // experimental evidence 5515 // protein binding // extended:inferred from electronic annotation; ZPR1; 3.5e-100 --- --- --- Control of Cell Proliferation // not recorded Nuclear // not recorded /// Cytoplasmic // not recorded --- --- "IPR004457 // Zn-finger, ZPR1 type" ZPR1 // ZPR1 zinc-finger domain;7.6e-196 PR00049 // Wilm's tumour protein signature;0.004 --- --- --- 4508021 // zinc finger protein 259; zinc finger protein ZPR1 [Homo sapiens];0.0 /// 6756053 // zinc finger protein 259 [Mus musculus];0.0 "ZPR1_HUMAN // Gene:ZNF259 Gene:ZPR1 Zinc-finger protein ZPR1 (Zinc finger protein 259). length=459;0 /// Q9CUE2 // Gene-TRE:ZFP259 ZINC FINGER PROTEIN 259 (FRAGMENT). length=225;1e-121 /// ZPR1_MOUSE // Gene:ZNF259 Gene:ZFP259 Gene:ZPR1 ZINC-FINGER PROTEIN ZPR1 (ZINC FINGER PROTEIN 259). length=459;0 /// Q9JJA1 // BRAIN CDNA, CLONE MNCB-6015, SIMILAR TO MUS MUSCULUS ZINC FINGER PROTEIN 259 (ZFP259), MRNA. length=459;0" 161881_f_at MG-U74Av2 // zinc finger protein 259 Curated Ortholog /// U41287_s_at Mu11KsubA // zinc finger protein 259 Curated Ortholog /// 103096_at MG-U74Av2 // zinc finger protein 259 Curated Ortholog /// 1428294_at MOE430A // zinc finger protein 259 Curated Ortholog /// 1419281_a_at MOE430A // zinc finger protein 259 Curated Ortholog chr11q23.3 // 118161411-118161820 // - // 99 Hs.7165 // 7 // NM_003904 // zinc finger protein 259 // chr11 // 118161359-118170812 // - 200055_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_006284.1 "gb:NM_006284.1 /DEF=Homo sapiens TATA box binding protein (TBP)-associated factor, RNA polymerase II, H, 30kD (TAF2H), mRNA. /FEA=mRNA /GEN=TAF2H /PROD=TATA box binding protein (TBP)-associatedfactor, RNA polymerase II, H, 30kD /DB_XREF=gi:5454105 /UG=Hs.89657 TATA box binding protein (TBP)-associated factor, RNA polymerase II, H, 30kD /FL=gb:NM_006284.1 gb:U13991.1" g5454105 Hs.89657.0 --- "TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa" TAF10 Chr:11p15.3 Hs.89657 6881 Q12962 --- --- ENSG00000166337 --- NM_006284 // TBP-related factor 10 --- 5669 // transcription factor TFIID complex // experimental evidence 3702 // RNA polymerase II transcription factor // experimental evidence /// 3700 // transcription factor // extended:inferred from electronic annotation; TFIID_30kD; 3e-39 --- --- DNA-associated (direct or indirect) // not recorded --- --- --- --- "IPR003923 // Transcription initiation factor TFIID, 23-30 kDa subunit /// IPR000515 // Binding-protein-dependent transport systems inner membrane component" TFIID_30kD // Transcription initiation factor TFIID 23-3;3e-39 PR01443 // Transcription initiation factor TFIID 23-30kDa subunit signature;3.6e-53 --- --- --- "2136293 // transcription factor IID 30k chain - human;e-119 /// 5454106 // TBP-related factor 10; TATA box binding protein (TBP)-associated factor, RNA polymerase II; TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30 kD; TATA box binding protein (TBP)-associated factor, RNA polymerase II, H, 30kD; transcription initiation factor TFIID 30 kD subunit [Homo sapiens];e-120" T2D8_HUMAN // SW:O00703 SW:Q13175 Gene:TAF10 Gene:TAF2H Gene:TAFII30 Transcription initiation factor TFIID 30 kDa subunit (TAFII-30) (TAFII30). length=218;1e-121 /// Q9QYY5 // Gene-TRE:TAF2H Gene-TRE:TAFII30 MTAFII30 PROTEIN. length=218;1e-109 "1384010_at RAE230B // 88.31% ESTs Putative Ortholog /// rc_AI172595_at RG-U34C // 88.31% ESTs Putative Ortholog /// aa276759_s_at Mu11KsubA // TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30 kDa Curated Ortholog /// 1448784_at MOE430A // TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30 kDa Curated Ortholog /// 103910_at MG-U74Av2 // TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30 kDa Curated Ortholog" chr11p15.4 // 7092579-7093398 // - // 100 "Hs.106960 // 1 // AL833496 // Homo sapiens mRNA; cDNA DKFZp686M1629 (from clone DKFZp686M1629), mRNA sequence // chr11 // 7087979-7093628 // - /// Hs.89657 // 3 // NM_006284 // TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa // chr11 // 7092521-7093894 // -" 200056_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_006333.1 "gb:NM_006333.1 /DEF=Homo sapiens nuclear DNA-binding protein (C1D), mRNA. /FEA=mRNA /GEN=C1D /PROD=nuclear DNA-binding protein /DB_XREF=gi:5453582 /UG=Hs.15164 nuclear DNA-binding protein /FL=gb:NM_006333.1" g5453582 Hs.15164.0 "1500074356 (2 transcripts, 1 gene cluster)" nuclear DNA-binding protein C1D Chr:2p13-p12 Hs.15164 10438 Q13901 --- --- ENSG00000115936 --- NM_006333 // nuclear DNA-binding protein /// NM_173177 // nuclear DNA-binding protein --- 5634 // nucleus // experimental evidence 3677 // DNA binding // experimental evidence DNA-binding protein // experimental evidence --- DNA-associated (direct or indirect) // experimental evidence --- Nuclear // experimental evidence --- --- --- --- --- --- --- --- 2642586 // small unique nuclear receptor co-repressor [Mus musculus];4e-68 /// 5453583 // nuclear DNA-binding protein [Homo sapiens];3e-75 Q13901 // Gene-TRE:C1D C1D DNA-BINDING PROTEIN (NUCLEAR DNA-BINDING PROTEIN). length=141;2e-75 /// O35473 // Gene-TRE:C1D Gene-TRE:SUN-COR SMALL UNIQUE NUCLEAR RECEPTOR CO-REPRESSOR (NUCLEAR DNA-BINDING PROTEIN). length=141;1e-68 /// Q61368 // Gene-TRE:C1D C1D PROTEIN. length=141;1e-67 "1382679_at RAE230B // 87.13% ESTs, Weakly similar to nucleolin-related protein NRP (NRP) [Rattus norvegicus] [R.norvegicus] Putative Ortholog /// rc_AA955298_at RG-U34B // 87.13% ESTs, Weakly similar to nucleolin-related protein NRP (NRP) [Rattus norvegicus] [R.norvegicus] Putative Ortholog /// 1388709_at RAE230A // 87.13% ESTs, Weakly similar to nucleolin-related protein NRP (NRP) [Rattus norvegicus] [R.norvegicus] Putative Ortholog /// 1448505_at MOE430A // nuclear DNA binding protein Curated Ortholog /// 130426_r_at MG-U74Cv2 // nuclear DNA binding protein Curated Ortholog /// x95591_s_at Mu11KsubB // nuclear DNA binding protein Curated Ortholog /// 1416887_at MOE430A // nuclear DNA binding protein Curated Ortholog /// 95479_at MG-U74Av2 // nuclear DNA binding protein Curated Ortholog /// 1416886_at MOE430A // nuclear DNA binding protein Curated Ortholog /// 107912_at MG-U74Bv2 // nuclear DNA binding protein Curated Ortholog" chr10p11.22 // 32516229-32516674 // - // 93 /// chr2p14 // 68455590-68456033 // - // 94 Hs.15164 // 6 // NM_006333 // nuclear DNA-binding protein // chr2 // 68455516-68476299 // - 200057_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_007363.2 "gb:NM_007363.2 /DEF=Homo sapiens non-POU-domain-containing, octamer-binding (NONO), mRNA. /FEA=mRNA /GEN=NONO /PROD=non-Pou domain-containing octamer (ATGCAAAT)binding protein /DB_XREF=gi:7657382 /UG=Hs.172207 non-POU-domain-containing, octamer-binding /FL=gb:NM_007363.2" g7657382 Hs.172207.0 "1500074357 (2 transcripts, 1 gene cluster)" "non-POU domain containing, octamer-binding" NONO Chr:Xq13.1 Hs.355861 4841 --- --- --- ENSG00000147140 --- "NM_007363 // non-POU domain containing, octamer-binding" 6371 // mRNA splicing // predicted/computed /// 6397 // mRNA processing // predicted/computed 5634 // nucleus // experimental evidence 3676 // nucleic acid binding // extended:Unknown; rrm; 8.4e-19 /// 8248 // pre-mRNA splicing factor // predicted/computed RNA-binding protein // predicted/computed RNA processing/modification // predicted/computed RNA-associated // not recorded --- Nuclear // not recorded --- --- --- "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;9.1e-34" IPB000237 // GRIP domain;0.003 --- --- --- "7657383 // non-Pou domain-containing octamer (ATGCAAAT) binding protein; Nuclear RNA-binding protein, 54-kD; non-POU-domain-containing, octamer-binding [Homo sapiens];0.0 /// 1895081 // nuclear matrix protein 55 [Homo sapiens];0.0" "Q99K48 // Gene-TRE:NONO NON-POU-DOMAIN-CONTAINING, OCTAMER-BINDING PROTEIN. length=473;0 /// Q9DBP2 // Gene-TRE:NONO NON-POU-DOMAIN-CONTAINING, OCTAMER-BINDING PROTEIN. length=257;1e-143 /// Q96G18 // UNKNOWN (PROTEIN FOR MGC:19787). length=340;0 /// Q9Z1Q0 // PTB-ASSOCIATED SPLICING FACTOR (FRAGMENT). length=122;2e-48 /// Q9BQC5 // NON-POU-DOMAIN-CONTAINING, OCTAMER-BINDING (UNKNOWN) (PROTEIN FOR MGC:20251). length=471;0 /// Q9CYQ4 // Gene-TRE:NONO 10, 11 DAYS EMBRYO CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:2810486E17, FULL INSERT SEQUENCE. length=203;1e-100 /// Q9BTG6 // SIMILAR TO NON-POU-DOMAIN-CONTAINING, OCTAMER-BINDING (FRAGMENT). length=171;2e-92 /// NR54_HUMAN // SW:O00201 SW:Q12786 SW:P30807 Gene:NONO Gene:NRB54 54 KDA NUCLEAR RNA- AND DNA-BINDING PROTEIN (P54(NRB)) (P54NRB) (55 KDA NUCLEAR PROTEIN) (NMT55) (NON-POU DOMAIN-CONTAINING OCTAMER- BINDING PROTEIN) (DNA-BINDING P52/P100 COMPLEX, 52 KDA SUBUNIT). length=470;0 /// Q15559 // (CLONE TEC14) (FRAGMENT). length=102;5e-19" "rc_AA851963_at RG-U34B // 89.51% ESTs Putative Ortholog /// 1375936_at RAE230A // 89.51% ESTs Putative Ortholog /// 1415820_x_at MOE430A // non-POU-domain-containing, octamer binding protein Curated Ortholog /// 1431239_at MOE430A // non-POU-domain-containing, octamer binding protein Curated Ortholog /// Msa.6321.0_s_at Mu11KsubB // non-POU-domain-containing, octamer binding protein Curated Ortholog /// Msa.7967.0_s_at Mu11KsubB // non-POU-domain-containing, octamer binding protein Curated Ortholog /// aa259479_s_at Mu11KsubA // non-POU-domain-containing, octamer binding protein Curated Ortholog /// 164629_at MG-U74Bv2 // non-POU-domain-containing, octamer binding protein Curated Ortholog /// aa259479_r_at Mu11KsubA // non-POU-domain-containing, octamer binding protein Curated Ortholog /// 167044_at MG-U74Cv2 // non-POU-domain-containing, octamer binding protein Curated Ortholog /// 93831_at MG-U74Av2 // non-POU-domain-containing, octamer binding protein Curated Ortholog /// 93830_at MG-U74Av2 // non-POU-domain-containing, octamer binding protein Curated Ortholog /// 1447160_at MOE430B // non-POU-domain-containing, octamer binding protein Curated Ortholog /// 1448103_s_at MOE430A // non-POU-domain-containing, octamer binding protein Curated Ortholog" chrXq13.1 // 67997806-67998255 // + // 98 "Hs.355860 // 1 // BC007108 // Unknown (protein for IMAGE:4284687) [Homo sapiens], mRNA sequence // chrX // 67997761-67998324 // + /// Hs.355861 // 1 // NM_007363 // non-POU domain containing, octamer-binding // chrX // 67980813-67998328 // + /// Hs.172207 // 8 // BC010049 // non-POU domain containing, octamer-binding // chrX // 67989163-67998330 // +" 200058_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank BC001417.1 "gb:BC001417.1 /DEF=Homo sapiens, Similar to U5 snRNP-specific protein, 200 kDa (DEXH RNA helicase family), clone MGC:2580, mRNA, complete cds. /FEA=mRNA /PROD=Similar to U5 snRNP-specific protein, 200 kDa(DEXH RNA helicase family) /DB_XREF=gi:12655128 /UG=Hs.246112 KIAA0788 protein /FL=gb:BC001417.1 gb:AF119874.1" g12655128 Hs.246112.0 "1500074358 (2 transcripts, 1 gene cluster)" "U5 snRNP-specific protein, 200-KD" U5-200KD Chr:2q11.1 Hs.246112 23020 BAA34508 /// O75643 /// Q8NBE6 /// Q96IF2 /// Q9H7S0 /// Q9H8B9 /// Q9P172 /// Q9UNV9 --- --- --- --- "NM_014014 // U5 snRNP-specific protein, 200-KD" --- --- 5524 // ATP binding // extended:inferred from electronic annotation; DEAD; 3.2e-45 --- --- --- --- --- --- --- "IPR003593 // AAA ATPase /// IPR001650 // Helicase, C-terminal /// IPR004179 // Sec63 domain /// IPR001410 // DEAD/DEAH box helicase" Sec63 // Sec63 domain;0 /// helicase_C // Helicase conserved C-terminal domain;9e-15 /// DEAD // DEAD/DEAH box helicase;3.7e-88 --- d1hv8a1 // c.37.1.13 // Putative DEAD box RNA helicase ;1.34e-33 --- --- 22042312 // similar to U5 small nuclear ribonucleoprotein 200 kDa helicase (U5 snRNP-specific 200 kDa protein) (U5-200KD) [Homo sapiens];0.0 /// 24307975 // KIAA0788 protein [Homo sapiens];0.0 "Q9UNV9 // PUTATIVE RNA HELICASE. length=595;0 /// Q9P172 // PRO2281 (SIMILAR TO U5 SNRNP-SPECIFIC PROTEIN, 200 KDA) (DEXH RNA HELICASE FAMILY). length=329;0" "1460552_at MOE430B // 84.41% U5 snRNP-specific protein, 200 kDa (DEXH RNA helicase family) Putative Ortholog" chr2q11.2 // 95394614-95396800 // - // 100 "Hs.246112 // 10 // NM_014014 // U5 snRNP-specific protein, 200-KD // chr2 // 95394594-95418767 // -" 200059_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank BC001360.1 "gb:BC001360.1 /DEF=Homo sapiens, ras homolog gene family, member A, clone MGC:2330, mRNA, complete cds. /FEA=mRNA /PROD=ras homolog gene family, member A /DB_XREF=gi:12655024 /UG=Hs.77273 ras homolog gene family, member A /FL=gb:NM_001664.1 gb:BC001360.1 gb:L25080.1" g12655024 Hs.77273.0 "1500074359 (2 transcripts, 1 gene cluster)" "ras homolog gene family, member A" ARHA Chr:3p21.3 Hs.77273 387 P06749 /// Q9BVT0 --- --- ENSG00000067560 --- "NM_001664 // ras homolog gene family, member A" 7012 // actin cytoskeleton reorganization // experimental evidence /// 7266 // Rho protein signal transduction // experimental evidence /// 7048 // oncogenesis // predicted/computed --- 3931 // Rho small monomeric GTPase // predicted/computed /// 3925 // small monomeric GTPase // extended:inferred from electronic annotation; ras; 1.5e-97 GTP-binding protein/GTPase // not recorded /// Hydrolase // not recorded Cell structure // not recorded --- --- --- G13_Signaling_Pathway /// G_Protein_Signaling /// Wnt_Signaling --- "IPR003578 // Ras small GTPase, Rho type /// IPR003575 // Ras small GTPase /// IPR001230 // Prenyl group binding site (CAAX box) /// IPR005225 // Small GTP-binding protein domain /// IPR001806 // Ras GTPase superfamily" ras // Ras family;1.5e-97 IPB000251 // ADP-ribosylation factors family;0.0036 d1tx4b_ // c.37.1.8 // RhoA ;1.31e-59 --- --- "16923986 // plysia ras-related homolog A2 [Rattus norvegicus];e-109 /// 10835049 // ras homolog gene family, member A; Ras homolog gene family, member A (oncogene RHO H12); Aplysia ras-related homolog 12; Rho12; RhoA [Homo sapiens];e-109" "RHOC_HUMAN // Gene:ARHC Gene:ARH9 Gene:RHOC Transforming protein RhoC (H9). length=193;1e-102 /// Q9BVT0 // SIMILAR TO RAS HOMOLOG GENE FAMILY, MEMBER A (FRAGMENT). length=106;3e-57 /// O35791 // Gene-TRE:RHOA RHOA (FRAGMENT). length=174;1e-100 /// Q9CR99 // Gene-TRE:4930544G11RIK 4930544G11RIK PROTEIN. length=193;4e-92 /// RHOA_CAEEL // Gene:RHO-1 Gene:RHOA Gene:Y51H4A.3 RAS-like GTP-binding protein RhoA. length=192;2e-96 /// Q9UEJ4 // Gene-TRE:RHOA MULTIDRUG RESISTANCE PROTEIN (FRAGMENT). length=189;1e-108 /// RHO1_DROME // SW:Q9V3J0 Gene:RHO1 Gene:CG8416 RAS-LIKE GTP-BINDING PROTEIN RHO1. length=192;2e-95 /// RHOC_MOUSE // Gene:ARHC Gene:ARH9 Gene:RHOC TRANSFORMING PROTEIN RHOC. length=193;1e-102 /// O88336 // Gene-TRE:ARHA2 Gene-TRE:ARHA RHO FAMILY GTPASE. length=193;1e-109 /// RHOA_MOUSE // SW:O88336 Gene:ARHA Gene:ARHA2 TRANSFORMING PROTEIN RHOA. length=193;1e-110 /// RHOA_HUMAN // SW:Q9UEJ4 Gene:ARHA Gene:ARH12 Gene:RHOA Gene:RHO12 Transforming protein RhoA (H12). length=193;1e-110 /// Q923X0 // RAC1 (FRAGMENT). length=59;3e-20" "1399027_at RAE230A // 94.17% plysia ras-related homolog A2 Putative Ortholog /// rc_AA964181_at RG-U34B // 94.17% plysia ras-related homolog A2 Putative Ortholog /// rc_AI179356_at RG-U34C // 94.17% plysia ras-related homolog A2 Putative Ortholog /// M95058complete_seq_at RT-U34 // 94.17% steroid 5-alpha-reductase 2 Putative Ortholog /// M95058complete_seq_at RG-U34A // 94.17% steroid 5-alpha-reductase 2 Putative Ortholog /// 1387580_at RAE230A // 94.17% steroid 5-alpha-reductase 2 Putative Ortholog /// 1370130_at RAE230A // 94.17% plysia ras-related homolog A2 Putative Ortholog /// rc_AA819664_at RG-U34C // 94.17% plysia ras-related homolog A2 Putative Ortholog /// 1437628_s_at MOE430A // ras homolog gene family, member A2 Curated Ortholog /// aa161790_s_at Mu11KsubA // ras homolog gene family, member A2 Curated Ortholog /// Msa.3406.0_s_at Mu11KsubB // ras homolog gene family, member A2 Curated Ortholog /// 101113_at MG-U74Av2 // ras homolog gene family, member A2 Curated Ortholog /// 101112_g_at MG-U74Av2 // ras homolog gene family, member A2 Curated Ortholog /// Msa.17783.0_s_at Mu11KsubB // ras homolog gene family, member A2 Curated Ortholog /// Msa.19181.0_s_at Mu11KsubB // ras homolog gene family, member A2 Curated Ortholog /// 1450632_at MOE430A // ras homolog gene family, member A2 Curated Ortholog /// 101111_at MG-U74Av2 // ras homolog gene family, member A2 Curated Ortholog" chr3p21.31 // 48541396-48541889 // + // 100 "Hs.77273 // 4 // L09159 // ras homolog gene family, member A // chr3 // 48525772-48542301 // +" 200060_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank BC001659.1 "gb:BC001659.1 /DEF=Homo sapiens, RNA-binding protein S1, serine-rich domain, clone MGC:1125, mRNA, complete cds. /FEA=mRNA /PROD=RNA-binding protein S1, serine-rich domain /DB_XREF=gi:12804496 /UG=Hs.75104 RNA-binding protein S1, serine-rich domain /FL=gb:BC001659.1 gb:BC001838.1" g12804496 Hs.75104.2 "1500074360 (3 transcripts, 1 gene cluster)" "RNA binding protein S1, serine-rich domain" RNPS1 Chr:16p13.3 Hs.75104 10921 Q15287 /// Q15288 /// Q8WY42 /// Q9NYG3 --- --- ENSG00000167971 --- "NM_006711 // RNA-binding protein S1, serine-rich domain /// NM_080594 // RNA-binding protein S1, serine-rich domain" 6350 // transcription // predicted/computed /// 8380 // RNA splicing // predicted/computed 5634 // nucleus // experimental evidence 3723 // RNA binding // predicted/computed /// 3676 // nucleic acid binding // extended:Unknown; rrm; 9.9e-18 RNA-binding protein // predicted/computed RNA processing/modification // predicted/computed RNA-associated // experimental evidence --- Nuclear // experimental evidence --- --- IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;9.9e-18" IPB000684 // Eukaryotic RNA polymerase II heptapeptide repeat;0.0098 "d1h6kx_ // d.58.7.1 // CBP20, 20KDa nuclear cap-binding protein ;2.72e-17" --- --- "3253165 // SR protein [Homo sapiens];e-171 /// 6857826 // RNA-binding protein S1, serine-rich domain; SR protein [Homo sapiens];e-172" "Q8WY42 // Gene-TRE:RNPS1 SPLICING-RELATED FACTOR RNPS1. length=282;1e-159 /// Q9NYG3 // SR-RELATED PROTEIN LD2 (FRAGMENT). length=228;1e-128 /// Q15288 // NO DISTINCTIVE PROTEIN MOTIFS. length=178;1e-101 /// Q99M28 // SIMILAR TO RIBONUCLEIC ACID BINDING PROTEIN S1. length=305;1e-173 /// Q15287 // RNA-BINDING PROTEIN (RNA-BINDING PROTEIN S1, SERINE-RICH DOMAIN). length=305;1e-172 /// Q922H8 // SIMILAR TO RNA-BINDING PROTEIN S1, SERINE-RICH DOMAIN (FRAGMENT). length=214;1e-122 /// O75308 // Gene-TRE:RNPS1 SR PROTEIN. length=305;1e-171" "1379818_at RAE230B // 90.64% ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (fragment) [R.norvegicus] Putative Ortholog /// rc_AI011984_at RG-U34B // 90.64% ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (fragment) [R.norvegicus] Putative Ortholog /// 167063_f_at MG-U74Cv2 // ribonucleic acid binding protein S1 Curated Ortholog /// 1437851_x_at MOE430A // ribonucleic acid binding protein S1 Curated Ortholog /// 161773_i_at MG-U74Av2 // ribonucleic acid binding protein S1 Curated Ortholog /// 1437027_x_at MOE430A // ribonucleic acid binding protein S1 Curated Ortholog /// X70067_s_at Mu11KsubB // ribonucleic acid binding protein S1 Curated Ortholog /// 1438267_x_at MOE430A // ribonucleic acid binding protein S1 Curated Ortholog /// 93518_at MG-U74Av2 // ribonucleic acid binding protein S1 Curated Ortholog /// 1437359_at MOE430B // ribonucleic acid binding protein S1 Curated Ortholog /// 1448324_at MOE430A // ribonucleic acid binding protein S1 Curated Ortholog" chr16p13.3 // 2328582-2329108 // - // 99 "Hs.75104 // 7 // NM_006711 // RNA binding protein S1, serine-rich domain // chr16 // 2328534-2343209 // - /// Hs.75104 // 7 // NM_080594 // RNA binding protein S1, serine-rich domain // chr16 // 2328534-2343526 // -" 200061_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank BC000523.1 "gb:BC000523.1 /DEF=Homo sapiens, Similar to ribosomal protein S24, clone MGC:8595, mRNA, complete cds. /FEA=mRNA /PROD=Similar to ribosomal protein S24 /DB_XREF=gi:12653502 /UG=Hs.180450 ribosomal protein S24 /FL=gb:BC000523.1 gb:BC003149.1" g12653502 Hs.180450.1 "1500074361 (3 transcripts, 1 gene cluster)" ribosomal protein S24 RPS24 Chr:10q22-q23 Hs.180450 6229 P16632 --- --- ENSG00000138326 --- NM_001026 // ribosomal protein S24 isoform c /// NM_033022 // ribosomal protein S24 isoform a 6412 // protein biosynthesis // predicted/computed 5843 // cytosolic small ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR001976 // Ribosomal protein S24e Ribosomal_S24e // Ribosomal protein S24e;2.4e-54 IPB001976 // Ribosomal protein S24e;6.2e-55 /// IPB001976 // Ribosomal protein S24e;6e-55 --- --- --- "4506703 // ribosomal protein S24 isoform c; 40S ribosomal protein S24 [Homo sapiens];1e-72 /// 14916501 // ribosomal protein S24 isoform a; 40S ribosomal protein S24 [Homo sapiens];1e-70 /// 12846587 // data source:MGD, source key:MGI:98147, evidence:ISS~putative~ribosomal protein S24 [Mus musculus];7e-72 /// 4506703 // ribosomal protein S24 isoform c; 40S ribosomal protein S24 [Homo sapiens];1e-70" RS24_HUMAN // Gene:RPS24 Gene:RPS19 40S ribosomal protein S24 (S19). length=133;5e-72 /// Q9D7P1 // Gene-TRE:RPS24 RIBOSOMAL PROTEIN S24. length=132;1e-71 /// Q9CY61 // Gene-TRE:RPS24 RIBOSOMAL PROTEIN S24. length=133;8e-71 /// RS24_HUMAN // Gene:RPS24 Gene:RPS19 40S ribosomal protein S24 (S19). length=133;2e-71 /// Q9DCA4 // Gene-TRE:RPS24 RIBOSOMAL PROTEIN S24. length=131;4e-71 /// Q9CQK2 // Gene-TRE:RPS24 RIBOSOMAL PROTEIN S24. length=134;1e-71 /// RS24_HUMAN // Gene:RPS24 Gene:RPS19 40S ribosomal protein S24 (S19). length=133;1e-71 93121_at MG-U74Av2 // ribosomal protein S24 Curated Ortholog /// 1456628_x_at MOE430A // ribosomal protein S24 Curated Ortholog /// 1436500_at MOE430A // ribosomal protein S24 Curated Ortholog /// 1453362_x_at MOE430A // ribosomal protein S24 Curated Ortholog /// 1428530_x_at MOE430A // ribosomal protein S24 Curated Ortholog /// 1436064_x_at MOE430A // ribosomal protein S24 Curated Ortholog /// x60289_f_at Mu11KsubB // ribosomal protein S24 Curated Ortholog /// 1455195_at MOE430A // ribosomal protein S24 Curated Ortholog chr10q22.3 // 79004737-79010061 // + // 97 Hs.180450 // 2 // BC000523 // ribosomal protein S24 // chr10 // 79004737-79010084 // + 200062_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank L05095.1 "gb:L05095.1 /DEF=Homo sapiens ribosomal protein L30 mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein L30 /DB_XREF=gi:388034 /UG=Hs.111222 ribosomal protein L30 /FL=gb:L05095.1 gb:NM_000989.1" g388034 Hs.111222.0 "1500074362 (3 transcripts, 2 gene clusters)" ribosomal protein L30 RPL30 Chr:8q22 Hs.356255 6156 P04645 --- --- ENSG00000156482 --- NM_000989 // ribosomal protein L30 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR004038 // Ribosomal protein L7Ae/L30e/S12e/Gadd45 /// IPR000231 // Ribosomal protein L30e Ribosomal_L7Ae // Ribosomal protein L7Ae/L30e/S12e/Gadd4;1.3e-38 IPB000955 // Ribosomal protein L7AE;6.7e-14 d1ck9a_ // d.79.3.1 // Eukaryotic ribosomal protein L30 (L30e) ;2.87e-40 --- --- 20985239 // similar to ribosomal protein L30 [Rattus norvegicus] [Mus musculus];9e-60 /// 4506631 // ribosomal protein L30; 60S ribosomal protein L30 [Homo sapiens];2e-60 "Q9XWS4 // Gene-TRE:Y106G6H.3 Y106G6H.3 PROTEIN. length=113;4e-43 /// Q9C8F7 // Gene-TRE:F15C21.6 60S RIBOSOMAL PROTEIN L30, PUTATIVE. length=112;4e-43 /// RL30_ARATH // Gene:RPL30 Gene:AT3G18740 Gene:MVE11.10 60S ribosomal protein L30. length=112;1e-41 /// RL30_HUMAN // Gene:RPL30 60S ribosomal protein L30. length=114;3e-61 /// RL30_HUMAN // Gene:RPL30 60S ribosomal protein L30. length=114;1e-60 /// Q9VJ19 // Gene-TRE:RPL30 Gene-TRE:CG10652 CG10652 PROTEIN. length=111;7e-46 /// Q8VZ19 // Gene-TRE:AT1G77940 PUTATIVE RIBOSOMAL PROTEIN L30. length=112;1e-42 /// RL30_YEAST // Gene:RPL30 Gene:RPL32 Gene:YGL030W 60S ribosomal protein L30 (YL32) (RP73). length=104;4e-31 /// RL30_HUMAN // Gene:RPL30 60S ribosomal protein L30. length=114;8e-61" rc_AI071224_at RG-U34C // 93.14% ESTs Putative Ortholog /// AA686461_at RG-U34C // 93.14% ribosomal protein L30 Putative Ortholog /// 1377402_at RAE230A // 93.14% ESTs Putative Ortholog /// rc_AI233749_at RG-U34A // 93.14% ribosomal protein L30 Putative Ortholog /// 1398774_at RAE230A // 93.14% ribosomal protein L30 Putative Ortholog /// 1456266_at MOE430A // ribosomal protein L30 Curated Ortholog /// 98119_at MG-U74Av2 // ribosomal protein L30 Curated Ortholog /// 1438076_at MOE430A // ribosomal protein L30 Curated Ortholog /// 1418273_a_at MOE430A // ribosomal protein L30 Curated Ortholog chr8q22.2 // 99128859-99131603 // - // 100 --- 200063_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank BC002398.1 "gb:BC002398.1 /DEF=Homo sapiens, nucleophosmin (nucleolar phosphoprotein B23, numatrin), clone MGC:8463, mRNA, complete cds. /FEA=mRNA /PROD=nucleophosmin (nucleolar phosphoprotein B23,numatrin) /DB_XREF=gi:12803184 /UG=Hs.9614 nucleophosmin (nucleolar phosphoprotein B23, numatrin) /FL=gb:NM_002520.1 gb:BC002398.1 gb:BC003670.1 gb:M23613.1 gb:M26697.1 gb:M28699.1" g12803184 Hs.9614.0 "1500074363 (2 transcripts, 1 gene cluster)" "nucleophosmin (nucleolar phosphoprotein B23, numatrin)" NPM1 Chr:5q35 Hs.355719 4869 P06748 /// Q9BTI9 /// Q9BYG9 /// Q9NX34 --- --- ENSG00000156427 --- "NM_002520 // nucleophosmin (nucleolar phosphoprotein B23, numatrin)" --- 5730 // nucleolus // not recorded 3676 // nucleic acid binding // extended:Unknown; Nucleoplasmin; 1.8e-78 --- --- --- --- Nuclear // not recorded /// Nuclear nucleolus // not recorded --- --- IPR004301 // Nucleoplasmin Nucleoplasmin // Nucleoplasmin;1.8e-78 IPB000547 // 7-Fold repeat in clathrin and VPS proteins;0.0012 d1k5ja_ // b.13.3.1 // Nucleoplasmin core ;1.01e-44 --- --- "18314408 // nucleophosmin (nucleolar phosphoprotein B23, numatrin) [Homo sapiens];e-168 /// 10835063 // nucleophosmin (nucleolar phosphoprotein B23, numatrin); Nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) [Homo sapiens];e-168" "Q9BTI9 // NUCLEOPHOSMIN (NUCLEOLAR PHOSPHOPROTEIN B23, NUMATRIN). length=214;1e-121 /// Q9NX34 // CDNA FLJ20465 FIS, CLONE KAT06236. length=179;1e-97 /// Q96EA5 // NUCLEOPHOSMIN (NUCLEOLAR PHOSPHOPROTEIN B23, NUMATRIN). length=294;1e-169 /// NPM_RAT // SW:Q64269 SW:Q63698 Gene:NPM1 NUCLEOPHOSMIN (NPM) (NUCLEOLAR PHOSPHOPROTEIN B23) (NUMATRIN) (NUCLEOLAR PROTEIN NO38). length=292;1e-160 /// NPM_HUMAN // SW:P08693 SW:Q12826 SW:Q14115 SW:Q13440 SW:Q13441 SW:Q8WTW5 SW:Q96EA5 SW:Q96AT6 SW:Q96DC4 Gene:NPM1 Gene:NPM Nucleophosmin (NPM) (Nucleolar phosphoprotein B23) (Numatrin) (Nucleolar protein NO38). length=294;1e-169 /// Q96DC4 // SIMILAR TO NUCLEOPHOSMIN (NUCLEOLAR PHOSPHOPROTEIN B23, NUMATRIN). length=265;1e-147 /// NPM_MOUSE // Gene:NPM1 NUCLEOPHOSMIN (NPM) (NUCLEOLAR PHOSPHOPROTEIN B23) (NUMATRIN) (NUCLEOLAR PROTEIN NO38). length=292;1e-159 /// Q8WTW5 // NUCLEOPHOSMIN (NUCLEOLAR PHOSPHOPROTEIN B23, NUMATRIN). length=294;1e-169 /// Q9DAY9 // Gene-TRE:NPM1 ADULT FEMALE PLACENTA CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:1600012A15, FULL INSERT SEQUENCE. length=257;1e-136 /// Q96AT6 // NUCLEOPHOSMIN (NUCLEOLAR PHOSPHOPROTEIN B23, NUMATRIN). length=294;1e-167 /// Q9BYG9 // NUCLEOPHOSMIN/B23.2. length=259;1e-146" J04943_at RG-U34A // nucleophosmin 1 Curated Ortholog /// 1398757_at RAE230A // nucleophosmin 1 Curated Ortholog /// 1399158_a_at RAE230A // nucleophosmin 1 Curated Ortholog /// 1398756_at RAE230A // nucleophosmin 1 Curated Ortholog /// J03969_at RG-U34A // nucleophosmin 1 Curated Ortholog /// M33212_s_at Mu11KsubA // nucleophosmin 1 Curated Ortholog /// 101634_at MG-U74Av2 // nucleophosmin 1 Curated Ortholog /// 1415839_a_at MOE430A // nucleophosmin 1 Curated Ortholog /// 165723_at MG-U74Cv2 // nucleophosmin 1 Curated Ortholog /// 165722_r_at MG-U74Cv2 // nucleophosmin 1 Curated Ortholog chr5q15 // 93487320-93487618 // - // 98 /// chr5q35.1 // 171537264-171540315 // + // 100 /// chr8q12.2 // 62055423-62055721 // + // 98 "Hs.355719 // 12 // NM_002520 // nucleophosmin (nucleolar phosphoprotein B23, numatrin) // chr5 // 171517402-171540433 // + /// Hs.355719 // 8 // NM_002520 // nucleophosmin (nucleolar phosphoprotein B23, numatrin) // chr5 // 93487189-93488497 // -" 200064_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank AF275719.1 "gb:AF275719.1 /DEF=Homo sapiens isolate Liv chaperone protein HSP90 beta (HSP90BETA) mRNA, complete cds. /FEA=mRNA /GEN=HSP90BETA /PROD=chaperone protein HSP90 beta /DB_XREF=gi:9082288 /UG=Hs.74335 heat shock 90kD protein 1, beta /FL=gb:BC004928.1 gb:M16660.1 gb:NM_007355.1 gb:AF275719.1" g9082288 Hs.74335.0 --- "heat shock 90kDa protein 1, beta" HSPCB Chr:6p12 Hs.74335 3326 P08238 /// Q9H6X9 /// Q9NTK6 --- --- ENSG00000096384 --- "NM_007355 // heat shock 90kDa protein 1, beta" --- --- 5524 // ATP binding // extended:inferred from electronic annotation; HATPase_c; 4.7e-16 --- --- --- --- --- --- --- "IPR001404 // Heat shock protein Hsp90 /// IPR001230 // Prenyl group binding site (CAAX box) /// IPR003594 // ATP-binding protein, ATPase-like" "HATPase_c // Histidine kinase-, DNA gyrase B-, and HSP90;4.7e-16 /// HSP90 // Hsp90 protein;0" IPB000135 // High mobility group proteins HMG1 and HMG2;0.00042 d1byqa_ // d.122.1.1 // HSP90 ;1.49e-98 --- --- "20149594 // heat shock 90kDa protein 1, beta; heat shock 90kD protein 1, beta; Heat-shock 90kD protein-1, beta [Homo sapiens];0.0 /// 72222 // heat shock protein 90-beta - human;0.0" "Q922F6 // UNKNOWN (PROTEIN FOR IMAGE:3584589) (FRAGMENT). length=491;0 /// O89078 // Gene-TRE:HSP84-1 Gene-TRE:HSP84 HEAT SHOCK PROTEIN 84 (FRAGMENT). length=129;9e-70 /// HS9B_BRARE // SW:Q90475 Gene:HSP90B HEAT SHOCK PROTEIN HSP 90-BETA. length=725;0 /// Q9H6X9 // CDNA: FLJ21717 FIS, CLONE COL10322. length=362;0 /// Q14568 // HEAT SHOCK PROTEIN 86 (FRAGMENT). length=312;1e-97 /// HS9A_HUMAN // SW:Q9BVQ5 Gene:HSPCA Gene:HSPC1 Gene:HSP90A Heat shock protein HSP 90-alpha (HSP 86). length=731;0 /// HS9A_MOUSE // Gene:HSPCA Gene:HSP86-1 Gene:HSP86 Heat shock protein HSP 90-alpha (HSP 86) (Tumor specific transplantation 86 kDa antigen) (TSTA). length=732;0 /// O03985 // Gene-TRE:HSP81.2 HEAT SHOCK PROTEIN. length=699;0 /// HS82_ARATH // Gene:HSP81-2 Gene:AT5G56030 Gene:MDA7.7 Heat shock protein 81-2 (HSP81-2). length=699;0 /// HS9A_BRARE // Gene:HSP90A Gene:HSP90 HEAT SHOCK PROTEIN HSP 90-ALPHA. length=726;0 /// O14942 // HEAT SHOCK PROTEIN BETA (FRAGMENT). length=130;7e-37 /// Q9LTF3 // HEAT-SHOCK PROTEIN. length=705;0 /// HS83_YEAST // Gene:HSC82 Gene:YMR186W Gene:YM8010.16 HEAT SHOCK COGNATE PROTEIN HSC82. length=704;0 /// Q96HX7 // SIMILAR TO HEAT SHOCK 90KD PROTEIN 1, ALPHA (FRAGMENT). length=425;0 /// Q9NQW0 // Gene-TRE:HSP90BETA CHAPERONE PROTEIN HSP90 BETA. length=632;0 /// HS9B_HUMAN // SW:Q9NQW0 Gene:HSPCB Gene:HSPC2 Gene:HSP90B Heat shock protein HSP 90-beta (HSP 84) (HSP 90). length=723;0 /// Q94A60 // AT5G56010/MDA7_5 (FRAGMENT). length=527;0 /// Q8VYT8 // Gene-TRE:AT5G56010 PUTATIVE HEAT SHOCK PROTEIN 90. length=699;0 /// Q9BVQ5 // UNKNOWN (PROTEIN FOR IMAGE:3446372) (FRAGMENT). length=548;0 /// HS9B_RAT // Gene:HSPCB Gene:HSP84 Heat shock protein HSP 90-beta (HSP 84). length=723;0 /// Q18688 // Gene-TRE:C47E8.5 C47E8.5 PROTEIN. length=702;0 /// Q96268 // Gene-TRE:HSP90A HEAT SHOCK PROTEIN 90A. length=704;0 /// HS82_YEAST // Gene:HSP82 Gene:HSP90 Gene:YPL240C Heat shock protein HSP82. length=709;0 /// HS83_DROME // SW:P92202 SW:P92174 SW:Q9VZT3 Gene:HSP83 Gene:CG1242 Heat shock protein 83 (HSP 82). length=717;0 /// HS81_ARATH // SW:Q03930 SW:Q9LTF3 SW:Q96268 Gene:HSP81-1 Gene:HSP83 Gene:AT5G52640 Gene:F6N7.13 Heat shock protein 81-1 (HSP81-1) (Heat shock protein 83). length=700;0 /// Q9FKU5 // Gene-TRE:AT5G56010, MDA7.5 HEAT SHOCK PROTEIN 90. length=699;0 /// O03986 // Gene-TRE:HSP81.4 HEAT SHOCK PROTEIN. length=699;0 /// Q9NTK6 // Gene-TRE:DKFZP761K0511 HYPOTHETICAL 84.8 KDA PROTEIN. length=737;0 /// Q91XW0 // Gene-TRE:HSP86 HEAT SHOCK PROTEIN 86. length=733;0 /// HS9B_MOUSE // Gene:HSPCB Gene:HSP84 Gene:HSP84-1 Heat shock protein HSP 90-beta (HSP 84) (Tumor specific transplantation 84 kDa antigen) (TSTA). length=723;0 /// Q8VZJ6 // Gene-TRE:AT5G56030 PUTATIVE HEAT SHOCK PROTEIN 81-2 (HSP81-2) (FRAGMENT). length=527;0 /// HS83_ARATH // SW:Q9FKU5 SW:Q8VYT8 SW:Q94A60 Gene:HSP81-3 Gene:HSP81.2 Gene:AT5G56010 Gene:MDA7.5 Heat shock protein 81-3 (HSP81-3) (HSP81.2). length=699;0" --- chr6p21.1 // 44217207-44217795 // + // 100 "Hs.74335 // 9 // NM_007355 // heat shock 90kDa protein 1, beta // chr6 // 44211262-44218028 // +" 200065_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank AF052179.1 "gb:AF052179.1 /DEF=Homo sapiens clone 24537 ADP-ribosylation factor 1 mRNA, complete cds. /FEA=mRNA /PROD=ADP-ribosylation factor 1 /DB_XREF=gi:3360490 /UG=Hs.74571 ADP-ribosylation factor 1 /FL=gb:M84326.1 gb:M36340.1 gb:AF055002.1 gb:AF052179.1 gb:NM_001658.2" g3360490 Hs.74571.0 "1500074364 (1 transcript, 1 gene cluster)" ADP-ribosylation factor 1 ARF1 Chr:1q42 Hs.74571 375 AAM12595 /// P32889 --- --- ENSG00000143761 --- NM_001658 // ADP-ribosylation factor 1 --- 5886 // plasma membrane // experimental evidence 5057 // receptor signaling protein // experimental evidence /// 3924 // GTPase // predicted/computed GTP-binding protein/GTPase // not recorded /// Hydrolase // not recorded --- --- Pathogenic Invasion // not recorded --- --- --- IPR000251 // ADP-ribosylation factor family /// IPR005225 // Small GTP-binding protein domain /// IPR001806 // Ras GTPase superfamily /// IPR002046 // GTP-binding protein SAR1 arf // ADP-ribosylation factor family;3.3e-127 PR00449 // Transforming protein P21 RAS signature;0.0022 d1rrga_ // c.37.1.8 // ADP-ribosylation factor ;1.65e-57 --- --- 1703377 // ADP-RIBOSYLATION FACTOR 1;e-101 /// 4502201 // ADP-ribosylation factor 1 [Homo sapiens];e-101 "Q9VSG8 // Gene-TRE:CG7197 CG7197 PROTEIN. length=179;3e-49 /// Q9CXX3 // Gene-TRE:ARF4 ADP-RIBOSYLATION FACTOR 4. length=180;3e-81 /// ARF3_HUMAN // Gene:ARF3 ADP-ribosylation factor 3. length=180;1e-97 /// ARL5_HUMAN // Gene:ARL5 ADP-ribosylation factor-like protein 5. length=179;2e-46 /// ARF1_CAEEL // Gene:ARF-1 Gene:B0336.2 ADP-RIBOSYLATION FACTOR 1. length=180;2e-95 /// Q9M1P5 // Gene-TRE:T17J13.250 ADP-RIBOSYLATION FACTOR-LIKE PROTEIN (AT3G62290/T17J13_250). length=181;2e-88 /// ARL1_MOUSE // Gene:ARL1 Gene:ARF7 ADP-ribosylation factor-like protein 1. length=181;5e-58 /// ARF2_ARATH // SW:Q9SGY6 Gene:AT1G10630 Gene:F20B24.7 Gene:AT1G70490 Gene:F24J13.6 ADP-RIBOSYLATION FACTOR 1-LIKE. length=180;1e-87 /// Q9VNQ2 // Gene-TRE:ARF79F Gene-TRE:LARF1 ARF79F PROTEIN (ADP-RIBOSYLATION FACTOR 1). length=182;2e-98 /// ARL1_HUMAN // SW:P80417 Gene:ARL1 ADP-ribosylation factor-like protein 1. length=181;1e-57 /// ARL1_MOUSE // Gene:ARL1 Gene:ARF7 ADP-ribosylation factor-like protein 1. length=181;1e-57 /// ARF1_YEAST // Gene:ARF1 Gene:YDL192W Gene:D1244 ADP-RIBOSYLATION FACTOR 1. length=180;8e-80 /// ARL1_YEAST // Gene:ARL1 Gene:ARF3 Gene:YBR164C Gene:YBR1216 ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1. length=183;3e-56 /// ARF1_HUMAN // SW:P10947 Gene:ARF1 ADP-ribosylation factor 1. length=180;1e-101 /// ARF1_DROME // SW:Q9VNQ2 Gene:ARF79F Gene:ARF1 Gene:LARF1 Gene:CG8385 ADP-ribosylation factor 1. length=181;6e-98 /// Q9V499 // Gene-TRE:ARF102F ARF102F PROTEIN. length=180;5e-81 /// ARF3_ARATH // Gene:ARF3 Gene:AT2G24765 Gene:F27A10.8 Gene:F27C12.31 ADP-ribosylation factor 3. length=181;4e-61 /// O45099 // Gene-TRE:F57H12.1 F57H12.1 PROTEIN. length=180;2e-85 /// Q9V7B0 // Gene-TRE:ARF51F Gene-TRE:CG8156 ARF51F PROTEIN. length=175;1e-67 /// ARF3_HUMAN // Gene:ARF3 ADP-ribosylation factor 3. length=180;3e-97 /// Q9D7H9 // Gene-TRE:2310008D22RIK 2310008D22RIK PROTEIN. length=181;6e-58 /// Q91VR9 // SIMILAR TO ADP-RIBOSYLATION FACTOR 2. length=181;1e-95 /// ARF2_MOUSE // SW:P10947 Gene:ARF2 ADP-RIBOSYLATION FACTOR 2. length=181;2e-97 /// Q96KC2 // CDNA FLJ14369 FIS, CLONE HEMBA1001174, HIGHLY SIMILAR TO ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 5. length=179;2e-46 /// ARF4_MOUSE // Gene:ARF4 ADP-RIBOSYLATION FACTOR 4. length=179;2e-81 /// ARF2_MOUSE // SW:P10947 Gene:ARF2 ADP-RIBOSYLATION FACTOR 2. length=181;9e-98 /// Q9D4P0 // Gene-TRE:4930587A11RIK 4930587A11RIK PROTEIN. length=179;9e-47 /// ARF4_HUMAN // SW:P21371 Gene:ARF4 ADP-ribosylation factor 4. length=179;8e-81 /// ARF1_ARATH // Gene:ARF1 Gene:AT2G47170 Gene:T08I13.1 ADP-RIBOSYLATION FACTOR 1. length=180;3e-87 /// ARF4_MOUSE // Gene:ARF4 ADP-RIBOSYLATION FACTOR 4. length=179;5e-81 /// ARF3_DROME // SW:Q9V7B0 Gene:ARF51F Gene:ARF3 Gene:CG8156 ADP-ribosylation factor 3. length=174;1e-67 /// ARF2_DROME // SW:Q9V499 Gene:ARF102F Gene:ARF2 Gene:CG11027 ADP-RIBOSYLATION FACTOR 2. length=179;2e-80 /// Q9DD04 // Gene-TRE:ARF4 ADP-RIBOSYLATION FACTOR 4. length=181;1e-81 /// ARL5_RAT // Gene:ARL5 ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 5. length=179;3e-47 /// ARF3_CAEEL // Gene:ARL-6 Gene:F45E4.1 ADP-RIBOSYLATION FACTOR 3. length=178;3e-56 /// ARF3_HUMAN // Gene:ARF3 ADP-ribosylation factor 3. length=180;5e-98" rc_AI234933_i_at RG-U34C // 90.46% ADP-ribosylation factor 1 Putative Ortholog /// rc_AI235811_f_at RG-U34C // 90.46% ADP-ribosylation factor 1 Putative Ortholog /// rc_AA899672_s_at RG-U34B // 90.46% ADP-ribosylation factor 1 Putative Ortholog /// rc_AI234933_f_at RG-U34C // 90.46% ADP-ribosylation factor 1 Putative Ortholog /// 1367459_at RAE230A // 90.46% ADP-ribosylation factor 1 Putative Ortholog /// rc_AI176906_at RG-U34C // 90.46% ADP-ribosylation factor 1 Putative Ortholog /// L12380_at RG-U34A // 90.46% ADP-ribosylation factor 1 Putative Ortholog /// rc_AI010141_at RG-U34B // 90.46% ADP-ribosylation factor 1 Putative Ortholog /// rc_AI058930_at RG-U34B // 90.46% ADP-ribosylation factor 1 Putative Ortholog /// rc_AI104557_f_at RG-U34C // 90.46% ADP-ribosylation factor 1 Putative Ortholog /// 1398817_at RAE230A // 90.46% ADP-ribosylation factor 1 Putative Ortholog /// rc_AI235811_i_at RG-U34C // 90.46% ADP-ribosylation factor 1 Putative Ortholog /// 1420920_a_at MOE430A // ADP-ribosylation factor 1 Curated Ortholog /// D87898_s_at Mu11KsubA // ADP-ribosylation factor 1 Curated Ortholog /// Msa.4088.0_s_at Mu11KsubB // ADP-ribosylation factor 1 Curated Ortholog /// 1426391_at MOE430A // ADP-ribosylation factor 1 Curated Ortholog /// 1426390_a_at MOE430A // ADP-ribosylation factor 1 Curated Ortholog /// 101016_at MG-U74Av2 // ADP-ribosylation factor 1 Curated Ortholog /// Msa.22435.0_s_at Mu11KsubB // ADP-ribosylation factor 1 Curated Ortholog chr1q42.13 // 224024852-224025421 // + // 100 "Hs.74571 // 7 // AK000620 // ADP-ribosylation factor 1 // chr1 // 224008962-224025512 // + /// Hs.316059 // 2 // BC011358 // Similar to ADP-ribosylation factor 1 [Homo sapiens], mRNA sequence // chr1 // 224009011-224025512 // +" 200066_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank AF182645.1 "gb:AF182645.1 /DEF=Homo sapiens chondrosarcoma-associated protein 2 (CSA2) mRNA, complete cds. /FEA=mRNA /GEN=CSA2 /PROD=chondrosarcoma-associated protein 2 /DB_XREF=gi:5901877 /UG=Hs.8024 IK cytokine, down-regulator of HLA II /FL=gb:NM_006083.2 gb:AF182645.1" g5901877 Hs.8024.0 --- "IK cytokine, down-regulator of HLA II" IK Chr:5q31.3 Hs.8024 3550 Q13123 /// Q95HA6 /// Q9H4P6 /// Q9UK43 /// Q9Y3Z5 --- --- ENSG00000172496 --- NM_006083 // RED protein 6955 // immune response // predicted/computed /// 7267 // cell-cell signaling // predicted/computed 5625 // soluble fraction // experimental evidence /// 5615 // extracellular space // experimental evidence 5125 // cytokine // not recorded --- --- --- Cell-to-cell signalling // not recorded /// Anti-pathogen response // not recorded Extracellular (excluding cell wall) // experimental evidence --- --- --- --- IPB003134 // Repeat in HS1/Cortactin;0.0033 --- --- --- 20546346 // similar to chondrosarcoma-associated protein 2 [Homo sapiens];0.0 /// 10835234 // RED protein; RD element; prer protein; IK factor; chondrosarcoma-associated protein 2; IK cytokine [Homo sapiens];0.0 "Q95H93 // SIMILAR TO IK CYTOKINE, DOWN-REGULATOR OF HLA II. length=557;0 /// Q19497 // Gene-TRE:F16H11.2 COSMID F16H11. length=57;3e-14 /// Q95HA6 // SIMILAR TO IK CYTOKINE, DOWN-REGULATOR OF HLA II. length=557;0 /// P97486 // Gene-TRE:RD H-2R HAPLOTYPE RD (FRAGMENT). length=50;2e-12 /// Q9Y3Z5 // Gene-TRE:DKFZP564B112 HYPOTHETICAL 24.3 KDA PROTEIN (FRAGMENT). length=208;1e-115 /// RED_MOUSE // Gene:IK Gene:RED Gene:RER Red protein (RER protein). length=557;0 /// RED_HUMAN // Gene:RED Gene:RER Gene:IK Red protein (RER protein) (IK factor) (Cytokine IK). length=557;0 /// Q9UK43 // Gene-TRE:CSA2 CHONDROSARCOMA-ASSOCIATED PROTEIN 2. length=557;0 /// Q9H4P6 // CLONE TCCCIA00142 MRNA SEQUENCE. length=240;1e-135" aa259592_s_at Mu11KsubA // IK cytokine Curated Ortholog /// 1439271_x_at MOE430A // IK cytokine Curated Ortholog /// 1423791_at MOE430A // IK cytokine Curated Ortholog /// 1435988_x_at MOE430A // IK cytokine Curated Ortholog /// 1451113_a_at MOE430A // IK cytokine Curated Ortholog /// 160397_at MG-U74Av2 // IK cytokine Curated Ortholog chr5q31.3 // 140622411-140624990 // + // 100 "Hs.8024 // 3 // AF182645 // IK cytokine, down-regulator of HLA II // chr5 // 140610416-140625098 // +" 200067_x_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AL078596 "Consensus includes gb:AL078596 /DEF=Human DNA sequence from clone RP3-429G5 on chromosome 6q21-22.1. Contains the NR2E1 gene for nuclear receptor 2E1 (tailless, TLL, TLX, XTLL), the 3 end of the SNX3 gene for sorting nexin 3, ESTs, STSs, GSSs and four predicted CpG islands /FEA=mRNA_2 /DB_XREF=gi:6010168 /UG=Hs.12102 sorting nexin 3 /FL=gb:AF062483.1 gb:AF034546.1 gb:NM_003795.1" Hs.12102.0_RC Hs.12102.0 "1500074365 (17 transcripts, 14 gene clusters)" --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- chr6q21 // 108555313-108555848 // - // 95 --- 200068_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank M94859.1 "gb:M94859.1 /DEF=Human calnexin mRNA, complete cds. /FEA=mRNA /PROD=calnexin /DB_XREF=gi:179831 /UG=Hs.155560 calnexin /FL=gb:NM_001746.1 gb:BC003552.1 gb:M94859.1 gb:M98452.1 gb:L10284.1 gb:L18887.1" g179831 Hs.155560.0 "1500074366 (1 transcript, 1 gene cluster)" calnexin CANX Chr:5q35 Hs.155560 821 P27824 --- --- ENSG00000127022 --- NM_001746 // calnexin 9306 // protein secretion // experimental evidence 5887 // integral to plasma membrane // not recorded /// 5789 // endoplasmic reticulum membrane // not recorded /// 5783 // endoplasmic reticulum // not recorded 5509 // calcium ion binding // experimental evidence /// 3754 // chaperone // not recorded Small molecule-binding protein // not recorded /// Chaperones // not recorded Protein translocation // not recorded Integral membrane // not recorded --- --- --- --- IPR001580 // Calreticulin calreticulin // Calreticulin family;2.2e-268 IPB001990 // Granins (chromogranin or secretogranin);0.0013 d1jhna3 // b.104.1.1 // Calnexin ;1.74e-55 /// d1jhna1 // b.29.1.12 // Calnexin ;5.21e-78 numtm:1;Nin-prob:0.00141;type:tm; --- 10716563 // calnexin [Homo sapiens];0.0 /// 2134858 // calnexin - human;0.0 CALX_MOUSE // Gene:CANX CALNEXIN PRECURSOR. length=591;0 /// CALX_RAT // Gene:CANX CALNEXIN PRECURSOR. length=591;0 /// Q16094 // CALNEXIN (FRAGMENT). length=272;1e-144 /// CALX_HUMAN // Gene:CANX CALNEXIN PRECURSOR (MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I ANTIGEN-BINDING PROTEIN P88) (P90) (IP90). length=592;0 rc_AI235707_g_at RG-U34A // calnexin Curated Ortholog /// 1371687_at RAE230A // calnexin Curated Ortholog /// rc_AI235707_g_at RT-U34 // calnexin Curated Ortholog /// rc_AA893328_at RG-U34A // calnexin Curated Ortholog /// rc_AI010725_at RG-U34A // calnexin Curated Ortholog /// rc_AI010725_at RT-U34 // calnexin Curated Ortholog /// rc_AA893328_at RT-U34 // calnexin Curated Ortholog /// rc_AI010725_g_at RG-U34A // calnexin Curated Ortholog /// rc_AI235707_at RT-U34 // calnexin Curated Ortholog /// rc_AA946205_at RG-U34B // calnexin Curated Ortholog /// 1388442_at RAE230A // calnexin Curated Ortholog /// rc_AI010725_g_at RT-U34 // calnexin Curated Ortholog /// rc_AA998523_i_at RG-U34B // calnexin Curated Ortholog /// rc_AA998523_f_at RG-U34B // calnexin Curated Ortholog /// 1371686_at RAE230A // calnexin Curated Ortholog /// rc_AI235707_at RG-U34A // calnexin Curated Ortholog /// 94886_at MG-U74Av2 // calnexin Curated Ortholog /// 160180_at MG-U74Av2 // calnexin Curated Ortholog /// 1415692_s_at MOE430B // calnexin Curated Ortholog /// 1428935_at MOE430A // calnexin Curated Ortholog /// 167966_r_at MG-U74Cv2 // calnexin Curated Ortholog /// Msa.353.0_s_at Mu11KsubB // calnexin Curated Ortholog /// aa163552_at Mu11KsubA // calnexin Curated Ortholog /// 169621_i_at MG-U74Cv2 // calnexin Curated Ortholog /// aa163552_g_at Mu11KsubA // calnexin Curated Ortholog /// 1422845_at MOE430A // calnexin Curated Ortholog chr5q35.3 // 180101143-180101705 // + // 100 Hs.155560 // 2 // M94859 // calnexin // chr5 // 180070095-180101735 // + 200069_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank NM_014706.1 Consensus includes gb:AI656011 /FEA=EST /DB_XREF=gi:4739990 /DB_XREF=est:tt42e08.x1 /CLONE=IMAGE:2243462 /UG=Hs.116875 KIAA0156 gene product /FL=gb:AB020880.1 gb:NM_014706.1 gb:D63879.1 Hs.116875.0 Hs.116875.0 --- squamous cell carcinoma antigen recognised by T cells 3 SART3 Chr:12q24.1 Hs.116875 9733 Q15020 /// Q96J95 --- --- ENSG00000075856 --- NM_014706 // squamous cell carcinoma antigen recognized by T cells 3 --- --- 3676 // nucleic acid binding // extended:Unknown; rrm; 2.7e-14 --- --- --- --- --- --- --- "IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) /// IPR003107 // RNA-processing protein, HAT helix" "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;1.6e-37" IPB003107 // HAT (Half-A-TPR) repeat;5.6e-05 d2u2fa_ // d.58.7.1 // Splicing factor U2AF 65 KDa subunit ;1.69e-18 --- --- 7661952 // squamous cell carcinoma antigen recognized by T cells 3; tat-interacting protein of 110 kDa [Homo sapiens];0.0 /// 8394239 // squamous cell carcinoma antigen recognized by T-cells 3 [Mus musculus];0.0 Q9JLI8 // Gene-TRE:SART3 TUMOR-REJECTION ANTIGEN SART3. length=962;0 /// Q96J95 // KIAA0156 ISOFORM. length=364;0 /// Q15020 // ORF. length=963;0 1417548_at MOE430A // squamous cell carcinoma antigen recognized by T-cells 3 Curated Ortholog /// 1417547_at MOE430A // squamous cell carcinoma antigen recognized by T-cells 3 Curated Ortholog /// AA182291_s_at Mu11KsubA // squamous cell carcinoma antigen recognized by T-cells 3 Curated Ortholog /// 97340_at MG-U74Av2 // squamous cell carcinoma antigen recognized by T-cells 3 Curated Ortholog /// 161432_f_at MG-U74Av2 // squamous cell carcinoma antigen recognized by T-cells 3 Curated Ortholog chr12q23.3 // 108796872-108797279 // - // 100 --- 200070_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank BC001393.1 "gb:BC001393.1 /DEF=Homo sapiens, hypothetical protein, clone MGC:782, mRNA, complete cds. /FEA=mRNA /PROD=hypothetical protein /DB_XREF=gi:12655084 /UG=Hs.4973 hypothetical protein /FL=gb:BC001393.1" g12655084 Hs.4973.1 --- hypothetical protein CGI-57 CGI-57 Chr:2q35 Hs.4973 27013 O75548 /// Q9BV87 /// Q9H4N0 /// Q9UQN0 --- --- ENSG00000115649 --- NM_015680 // hypothetical protein CGI-57 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 20149623 // hypothetical protein CGI-57 [Homo sapiens];0.0 /// 4929583 // CGI-57 protein [Homo sapiens];0.0 Q9H4N0 // CLONE CDABP0125 MRNA SEQUENCE. length=410;0 /// O75548 // HYPOTHETICAL 23.7 KDA PROTEIN (FRAGMENT). length=219;1e-130 /// Q9CVK8 // Gene-TRE:1810031K17RIK 1810031K17RIK PROTEIN (FRAGMENT). length=146;2e-49 /// Q9UQN0 // CGI-57 PROTEIN. length=410;0 /// Q9BV87 // HYPOTHETICAL 45.4 KDA PROTEIN. length=410;0 rc_AA800665_at RG-U34A // 83.91% ESTs Putative Ortholog /// 1371769_at RAE230A // 83.91% ESTs Putative Ortholog /// 112817_at MG-U74Bv2 // 85.12% RIKEN cDNA 1810031K17 gene Putative Ortholog /// 1427879_at MOE430A // 85.12% RIKEN cDNA 1810031K17 gene Putative Ortholog /// 169376_r_at MG-U74Cv2 // 85.12% RIKEN cDNA 1810031K17 gene Putative Ortholog /// 169556_at MG-U74Cv2 // 85.12% RIKEN cDNA 1810031K17 gene Putative Ortholog /// 162709_at MG-U74Bv2 // 85.12% RIKEN cDNA 1810031K17 gene Putative Ortholog /// 164788_f_at MG-U74Bv2 // 85.12% RIKEN cDNA 1810031K17 gene Putative Ortholog chr2q35 // 218758012-218758481 // - // 99 Hs.4973 // 6 // NM_015680 // hypothetical protein CGI-57 // chr2 // 218757992-218763062 // - 200071_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank BF224259 "Consensus includes gb:BF224259 /FEA=EST /DB_XREF=gi:11131523 /DB_XREF=est:7q85c09.x1 /CLONE=IMAGE:3705208 /UG=Hs.79968 splicing factor 30, survival of motor neuron-related /FL=gb:AF083385.1 gb:AF107463.1 gb:NM_005871.1" Hs.79968.0.S2 Hs.79968.0 --- "splicing factor 30, survival of motor neuron-related" SPF30 Chr:10q23 Hs.79968 10285 O75940 --- 603519 ENSG00000119953 --- "NM_005871 // splicing factor 30, survival of motor neuron-related" 6371 // mRNA splicing // predicted/computed /// 6917 // induction of apoptosis // experimental evidence /// 6397 // mRNA processing // predicted/computed 5681 // spliceosome complex // experimental evidence /// 5634 // nucleus // experimental evidence 8248 // pre-mRNA splicing factor // predicted/computed Spliceosomal subunit // experimental evidence RNA processing/modification // experimental evidence /// RNA splicing // experimental evidence RNA-associated // predicted/computed Cell death/Apoptosis // not recorded Nuclear // experimental evidence --- --- IPR002999 // Tudor domain --- --- "d1g5va_ // b.34.9.1 // Survival motor neuron protein 1, smn ;1.05e-19" --- --- "23598625 // similar to splicing factor 30, survival of motor neuron-related [Homo sapiens] [Mus musculus];e-131 /// 5032113 // splicing factor 30, survival of motor neuron-related [Homo sapiens];e-133" "O75940 // 30 KDA SPLICING FACTOR (SIMILAR TO SPLICING FACTOR 30, SURVIVAL OF MOTOR NEURON-RELATED). length=238;1e-133" "1380619_at RAE230B // 88.83% ESTs, Weakly similar to hypothetical protein HSPC232 [Homo sapiens] [H.sapiens] Putative Ortholog /// 167681_at MG-U74Cv2 // RIKEN cDNA 2410004J23 gene Curated Ortholog /// 1429043_at MOE430A // RIKEN cDNA 2410004J23 gene Curated Ortholog /// 1452999_at MOE430A // RIKEN cDNA 2410004J23 gene Curated Ortholog /// 99162_at MG-U74Av2 // RIKEN cDNA 2410004J23 gene Curated Ortholog /// 167680_at MG-U74Cv2 // RIKEN cDNA 2410004J23 gene Curated Ortholog" chr10q25.2 // 111286502-111286922 // - // 100 "Hs.79968 // 2 // NM_005871 // splicing factor 30, survival of motor neuron-related // chr10 // 111286421-111298321 // -" 200072_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank AF061832.1 "gb:AF061832.1 /DEF=Homo sapiens M4 protein deletion mutant mRNA, complete cds. /FEA=mRNA /PROD=M4 protein deletion mutant /DB_XREF=gi:3126877 /UG=Hs.79024 heterogeneous nuclear ribonucleoprotein M /FL=gb:AF061832.1" g3126877 Hs.79024.1 "1500074367 (2 transcripts, 1 gene cluster)" heterogeneous nuclear ribonucleoprotein M HNRPM Chr:19p13.3-p13.2 Hs.79024 4670 P52272 /// Q8WZ44 /// Q96H56 /// Q9BWL9 /// Q9Y492 --- --- ENSG00000099783 --- NM_005968 // heterogeneous nuclear ribonucleoprotein M isoform a /// NM_031203 // heterogeneous nuclear ribonucleoprotein M isoform b --- 5624 // membrane fraction // predicted/computed /// 5886 // plasma membrane // predicted/computed /// 5887 // integral to plasma membrane // predicted/computed 4888 // transmembrane receptor // not recorded /// 3676 // nucleic acid binding // extended:Unknown; rrm; 7.6e-18 Receptor (protein translocation) // experimental evidence Protein translocation // not recorded Integral membrane // predicted/computed --- Unspecified membrane // predicted/computed --- --- IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;2.7e-64" "IPB002004 // Poly-adenylate binding protein, unique domain;9.9e-07 /// IPB002004 // Poly-adenylate binding protein, unique domain;9e-07" d1hd1a_ // d.58.7.1 // Heterogeneous nuclear ribonucleoprotein d0 ;2.87e-18 --- --- "16905456 // ribonucleoprotein [Homo sapiens];0.0 /// 1710636 // Heterogeneous nuclear ribonucleoprotein M (hnRNP M);0.0 /// 14141154 // heterogeneous nuclear ribonucleoprotein M, isoform b; heterogenous nuclear ribonucleoprotein M4; N-acetylglucosamine receptor 1; heterogenous nuclear ribonucleoprotein M; M4 protein [Homo sapiens];0.0 /// 14141152 // heterogeneous nuclear ribonucleoprotein M, isoform a; heterogenous nuclear ribonucleoprotein M4; N-acetylglucosamine receptor 1; heterogenous nuclear ribonucleoprotein M; M4 protein [Homo sapiens];0.0" Q62826 // M4 PROTEIN (FRAGMENT). length=697;0 /// ROM_HUMAN // Gene:HNRPM HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M (HNRNP M). length=730;0 /// Q9BWL9 // HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M. length=730;0 /// Q99JQ0 // HYPOTHETICAL 40.8 KDA PROTEIN (FRAGMENT). length=386;0 /// Q9D0E1 // Gene-TRE:2610023M21RIK 2610023M21RIK PROTEIN. length=729;0 /// Q8WZ44 // Gene-TRE:HNRNP RIBONUCLEOPROTEIN. length=691;0 /// Q9Y492 // M4 PROTEIN DELETION MUTANT. length=691;0 /// Q96H56 // SIMILAR TO HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M (FRAGMENT). length=428;0 U32577_at RG-U34A // 92.58% heterogeneous nuclear ribonucleoprotein M Putative Ortholog /// 1370919_at RAE230A // 92.58% heterogeneous nuclear ribonucleoprotein M Putative Ortholog /// 1426698_a_at MOE430A // RIKEN cDNA 2610023M21 gene Curated Ortholog /// 96266_at MG-U74Av2 // RIKEN cDNA 2610023M21 gene Curated Ortholog /// 136707_f_at MG-U74Cv2 // RIKEN cDNA 2610023M21 gene Curated Ortholog /// aa117835_s_at Mu11KsubA // RIKEN cDNA 2610023M21 gene Curated Ortholog chr19p13.2 // 8764921-8767510 // + // 100 Hs.79024 // 9 // NM_005968 // heterogeneous nuclear ribonucleoprotein M // chr19 // 8723784-8767794 // + /// Hs.79024 // 9 // NM_031203 // heterogeneous nuclear ribonucleoprotein M // chr19 // 8723784-8767794 // + 200073_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank M94630.1 "gb:M94630.1 /DEF=Homo sapiens hnRNP-C like protein mRNA, complete cds. /FEA=mRNA /PROD=DNA-binding protein /DB_XREF=gi:181913 /UG=Hs.303627 heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA-binding protein 1, 37kD) /FL=gb:M94630.1" g181913 Hs.303627.3 "1500074368 (4 transcripts, 1 gene cluster)" "heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)" HNRPD Chr:4q21.1-q21.2 Hs.406404 3184 AAH02401 /// AAH23977 /// AAH26015 /// Q01858 /// Q14103 --- --- ENSG00000138668 --- NM_002138 // heterogeneous nuclear ribonucleoprotein D isoform c /// NM_031369 // heterogeneous nuclear ribonucleoprotein D isoform b /// NM_031370 // heterogeneous nuclear ribonucleoprotein D isoform a 6396 // RNA processing // predicted/computed /// 6401 // RNA catabolism // predicted/computed 5634 // nucleus // predicted/computed 3723 // RNA binding // predicted/computed /// 3676 // nucleic acid binding // extended:Unknown; rrm; 1.6e-24 RNA-binding protein // predicted/computed RNA turnover // predicted/computed /// RNA processing/modification // predicted/computed RNA-associated // predicted/computed --- Nuclear // predicted/computed --- --- IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;1.5e-48" IPB000504 // RNA-binding region RNP-1 (RNA recognition motif);0.0067 /// IPB000504 // RNA-binding region RNP-1 (RNA recognition motif);0.0078 /// IPB000504 // RNA-binding region RNP-1 (RNA recognition motif);0.0074 d1hd1a_ // d.58.7.1 // Heterogeneous nuclear ribonucleoprotein d0 ;2.42e-20 /// d1hd1a_ // d.58.7.1 // Heterogeneous nuclear ribonucleoprotein d0 ;4.26e-21 /// d1hd1a_ // d.58.7.1 // Heterogeneous nuclear ribonucleoprotein d0 ;1.47e-20 --- --- "14110414 // heterogeneous nuclear ribonucleoprotein D isoform c; AU-rich element RNA-binding protein 1; heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA-binding protein 1, 37kD); ARE-binding protein AUFI, type A; heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kD) [Homo sapiens];e-177 /// 3747052 // estrogen response element binding protein [Saguinus oedipus];e-174 /// 14110420 // heterogeneous nuclear ribonucleoprotein D isoform a; AU-rich element RNA-binding protein 1; heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA-binding protein 1, 37kD); ARE-binding protein AUFI, type A; heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kD) [Homo sapiens];0.0 /// 14110417 // heterogeneous nuclear ribonucleoprotein D isoform b; AU-rich element RNA-binding protein 1; heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA-binding protein 1, 37kD); ARE-binding protein AUFI, type A; heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kD) [Homo sapiens];0.0 /// 13242324 // RNA binding protein p45AUF1 [Rattus norvegicus];0.0" "ROC_RAT // Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP core protein C) (Fragment). length=158;3e-89 /// Q91X94 // SIMILAR TO HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D (AU-RICH ELEMENT RNA-BINDING PROTEIN 1, 37KD). length=257;1e-112 /// Q01858 // DNA-BINDING PROTEIN. length=328;0 /// Q26273 // Gene-TRE:SQD Gene-TRE:RBP3 Gene-TRE:CG17791 RNA-BINDING PROTEIN 3 (FRAGMENT). length=44;2e-11 /// Q9SSE0 // Gene-TRE:MLP3.26 PUTATIVE RNA-BINDING PROTEIN, 3' PARTIAL (FRAGMENT). length=74;2e-14 /// Q04150 // HETEROGENEOUS RIBONUCLEOPROTEIN C (HNRNP CORE PROTEIN C). length=284;2e-87 /// Q60668 // TRE:Q60667 Gene-TRE:HNRPD Gene-TRE:AUF1 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D (AU-RICH ELEMENT RNA-BINDING PROTEIN 1) (ARE ELEMENT RNA-BINDING PROTEIN AUF1). length=269;1e-132 /// Q9BQ99 // UNKNOWN (PROTEIN FOR MGC:10739) (SIMILAR TO HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A/B). length=285;1e-89" rc_AI172328_at RG-U34C // 94.14% RNA binding protein p45AUF1 Putative Ortholog /// 1371840_at RAE230A // 94.14% ESTs Putative Ortholog /// rc_AA875047_at RG-U34A // 94.14% RNA binding protein p45AUF1 Putative Ortholog /// rc_AI231550_at RG-U34C // 94.14% RNA binding protein p45AUF1 Putative Ortholog /// rc_AA943737_at RG-U34B // 94.14% ESTs Putative Ortholog /// rc_AA945952_g_at RG-U34B // 94.14% RNA binding protein p45AUF1 Putative Ortholog /// 1377006_at RAE230A // 94.14% RNA binding protein p45AUF1 Putative Ortholog /// 1369971_a_at RAE230A // 94.14% RNA binding protein p45AUF1 Putative Ortholog /// rc_AA957413_at RG-U34B // 94.14% RNA binding protein p45AUF1 Putative Ortholog /// rc_AI030362_at RG-U34B // 94.14% RNA binding protein p45AUF1 Putative Ortholog /// 1398960_at RAE230A // 94.14% RNA binding protein p45AUF1 Putative Ortholog /// 1373255_at RAE230A // 94.14% RNA binding protein p45AUF1 Putative Ortholog /// rc_AA945952_at RG-U34B // 94.14% RNA binding protein p45AUF1 Putative Ortholog /// U11274_s_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein D Curated Ortholog /// 1425142_a_at MOE430A // heterogeneous nuclear ribonucleoprotein D Curated Ortholog /// 94303_at MG-U74Av2 // heterogeneous nuclear ribonucleoprotein D Curated Ortholog /// 167988_i_at MG-U74Cv2 // heterogeneous nuclear ribonucleoprotein D Curated Ortholog chrXq11.2 // 60730245-60730688 // + // 94 --- 200074_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank U16738.1 "gb:U16738.1 /DEF=Homo sapiens CAG-isl 7 mRNA, complete cds. /FEA=mRNA /PROD=CAG-isl 7 /DB_XREF=gi:608516 /UG=Hs.738 ribosomal protein L14 /FL=gb:U16738.1" g608516 Hs.738.2 "1500074369 (3 transcripts, 1 gene cluster)" ribosomal protein L14 RPL14 Chr:3p22-p21.2 Hs.406451 9045 P50914 --- --- ENSG00000139239 --- NM_003973 // ribosomal protein L14 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed RNA-associated // predicted/computed /// Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR005824 // KOW /// IPR002784 // Ribosomal protein L14 KOW // KOW motif;0.0014 /// Ribosomal_L14e // Ribosomal protein L14;3.2e-45 IPB002101 // MARCKS family;0.005 --- --- --- 16753225 // ribosomal protein L14; 60S ribosomal protein L14 [Homo sapiens];e-118 /// 20810536 // ribosomal protein L14 [Homo sapiens];e-117 Q9D8Q1 // Gene-TRE:3100001N19RIK 3100001N19RIK PROTEIN. length=217;1e-100 /// Q96GR0 // UNKNOWN (PROTEIN FOR MGC:16644). length=218;1e-116 /// Q9BYF6 // Gene-TRE:RPL14 RIBOSOMAL PROTEIN L14 (FRAGMENT). length=32;3e-12 /// RL14_HUMAN // SW:Q92579 SW:Q96GR0 SW:Q9BSB8 SW:Q8WUT0 SW:Q9BW65 Gene:RPL14 60S ribosomal protein L14 (CAG-ISL 7). length=212;1e-117 /// Q9CR57 // Gene-TRE:3100001N19RIK 3100001N19RIK PROTEIN. length=217;1e-101 /// Q9BSB8 // SIMILAR TO RIBOSOMAL PROTEIN L14. length=222;1e-115 /// Q9CWK0 // Gene-TRE:3100001N19RIK 3100001N19RIK PROTEIN. length=227;1e-80 /// Q8WUT0 // RIBOSOMAL PROTEIN L14. length=219;1e-116 /// RL14_RAT // Gene:RPL14 60S RIBOSOMAL PROTEIN L14. length=213;1e-100 /// Q922F9 // SIMILAR TO RIKEN CDNA 3100001N19 GENE (FRAGMENT). length=173;1e-75 /// Q9DCB7 // Gene-TRE:3100001N19RIK 3100001N19RIK PROTEIN. length=159;6e-74 /// Q9BW65 // SIMILAR TO RIBOSOMAL PROTEIN L14. length=216;1e-116 1375375_at RAE230A // 84.47% ribosomal protein L14 Putative Ortholog /// X94242_at RG-U34A // 84.47% ribosomal protein L14 Putative Ortholog /// 1438626_x_at MOE430A // 84.24% RIKEN cDNA 3100001N19 gene Putative Ortholog /// 1433688_x_at MOE430A // 84.24% RIKEN cDNA 3100001N19 gene Putative Ortholog /// 1426793_a_at MOE430A // 84.24% RIKEN cDNA 3100001N19 gene Putative Ortholog /// 1438507_x_at MOE430A // 84.24% RIKEN cDNA 3100001N19 gene Putative Ortholog /// 1436688_x_at MOE430A // 84.24% RIKEN cDNA 3100001N19 gene Putative Ortholog /// w11855_at Mu11KsubB // 84.24% RIKEN cDNA 3100001N19 gene Putative Ortholog /// 1422128_at MOE430A // 84.24% RIKEN cDNA 3100001N19 gene Putative Ortholog /// 99653_at MG-U74Av2 // 84.24% RIKEN cDNA 3100001N19 gene Putative Ortholog chr12q22 // 95883303-95883685 // + // 92 --- 200075_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank BC006249.1 "gb:BC006249.1 /DEF=Homo sapiens, guanylate kinase 1, clone MGC:10618, mRNA, complete cds. /FEA=mRNA /PROD=guanylate kinase 1 /DB_XREF=gi:13623296 /FL=gb:BC006249.1" g13623296 g13623296 "1500074370 (3 transcripts, 1 gene cluster)" guanylate kinase 1 GUK1 Chr:1q32-q41 Hs.3764 2987 Q16774 /// Q96IN2 --- --- ENSG00000143774 --- NM_000858 // guanylate kinase 1 6183 // GTP biosynthesis // experimental evidence --- 4385 // guanylate kinase // experimental evidence /// 8144 // drug binding // not recorded Transferase // experimental evidence /// Other kinase // experimental evidence --- --- Photoreception // not recorded --- --- --- IPR000619 // Guanylate kinase Guanylate_kin // Guanylate kinase;1.4e-60 PR00364 // Disease resistance protein signature;0.0083 d1gky__ // c.37.1.1 // Guanylate kinase ;3.12e-61 --- EC:2.7.4.8 // KGUA_HUMAN GUANYLATE KINASE (EC 2.7.4.8) (GMP KINASE).;1.06e-67 13938453 // Similar to guanylate kinase 1 [Homo sapiens];1e-97 /// 4504221 // guanylate kinase 1 [Homo sapiens];e-106 KGUA_MOUSE // Gene:GUK1 Gene:GMK GUANYLATE KINASE (EC 2.7.4.8) (GMP KINASE). length=197;3e-93 /// Q96IN2 // SIMILAR TO GUANYLATE KINASE 1 (FRAGMENT). length=185;3e-98 /// KGUA_HUMAN // Gene:GUK1 Gene:GMK Guanylate kinase (EC 2.7.4.8) (GMP kinase). length=196;1e-106 /// KGUA_YEAST // Gene:GUK1 Gene:YDR454C Gene:D9461.39 Guanylate kinase (EC 2.7.4.8) (GMP kinase). length=186;4e-47 1416395_at MOE430A // guanylate kinase 1 Curated Ortholog /// Msa.38834.0_s_at Mu11KsubB // guanylate kinase 1 Curated Ortholog /// U53514_s_at Mu11KsubA // guanylate kinase 1 Curated Ortholog /// 98544_at MG-U74Av2 // guanylate kinase 1 Curated Ortholog chr1q42.13 // 224073741-224075222 // + // 100 Hs.3764 // 4 // NM_000858 // guanylate kinase 1 // chr1 // 224066618-224075249 // + 200076_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank BC006479.1 "gb:BC006479.1 /DEF=Homo sapiens, hypothetical protein MGC2749, clone MGC:4376, mRNA, complete cds. /FEA=mRNA /PROD=hypothetical protein MGC2749 /DB_XREF=gi:13623702 /FL=gb:BC006479.1" g13623702 g13623702 "1500074371 (2 transcripts, 1 gene cluster)" hypothetical protein MGC2749 MGC2749 Chr:19p13.11 Hs.108847 79036 Q9BQD3 --- --- ENSG00000105700 --- NM_024069 // hypothetical protein MGC2749 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 3288888 // R26445_1 [Homo sapiens];1e-95 /// 13129050 // hypothetical protein MGC2749 [Homo sapiens];4e-96 Q9CZ10 // Gene-TRE:2810422J05RIK 2810422J05RIK PROTEIN. length=177;1e-89 /// Q9BQD3 // HYPOTHETICAL 19.6 KDA PROTEIN (UNKNOWN) (PROTEIN FOR MGC:2749). length=176;1e-96 /// O76098 // R26445_1 (FRAGMENT). length=183;1e-100 1430258_at MOE430B // RIKEN cDNA 2810422J05 gene Curated Ortholog /// aa199273_s_at Mu11KsubA // RIKEN cDNA 2810422J05 gene Curated Ortholog /// 1428180_at MOE430B // RIKEN cDNA 2810422J05 gene Curated Ortholog chr19p13.11 // 19071662-19072124 // + // 100 Hs.108847 // 5 // NM_024069 // hypothetical protein MGC2749 // chr19 // 19060582-19072167 // + 200077_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank D87914.1 "gb:D87914.1 /DEF=Human mRNA for ornithine decarboxylase antizyme, complete cds. /FEA=mRNA /GEN=hAZ-brain /PROD=ornithine decarboxylase antizyme /DB_XREF=gi:1590807 /FL=gb:D87914.1" g1590807 g1590807 "1500074372 (4 transcripts, 1 gene cluster)" ornithine decarboxylase antizyme 1 OAZ1 Chr:19p13.3 Hs.281960 4946 P54368 --- --- ENSG00000104904 --- NM_004152 // ornithine decarboxylase antizyme 1 6596 // polyamine biosynthesis // predicted/computed --- 8073 // ornithine decarboxylase inhibitor // predicted/computed /// 4857 // enzyme inhibitor // extended:Unknown; ODC_AZ; 1.8e-152 Inhibitor or repressor // not recorded Other metabolism // not recorded --- --- --- Nucleotide_Metabolism --- IPR002993 // Ornithine decarboxylase antizyme ODC_AZ // Ornithine decarboxylase antizyme;1.8e-152 IPB002993 // Ornithine decarboxylase antizyme;2.4e-36 --- --- --- 1590808 // ornithine decarboxylase antizyme [Homo sapiens];e-130 /// 9845505 // ornithine decarboxylase antizyme 1; antizyme 1 [Homo sapiens];e-131 "OAZ_HUMAN // SW:Q92595 SW:Q14989 SW:O43382 SW:Q9UPL9 Gene:OAZ1 Gene:OAZ ORNITHINE DECARBOXYLASE ANTIZYME (ODC-AZ). length=227;5e-90 /// Q9HB02 // ORNITHINE DECARBOXYLASE ANTIZYME 4. length=218;9e-63 /// OAZ_MOUSE // SW:O08610 Gene:OAZ1 Gene:OAZ ORNITHINE DECARBOXYLASE ANTIZYME (ODC-AZ). length=226;1e-74 /// OAZS_BRARE // ORNITHINE DECARBOXYLASE ANTIZYME, SHORT ISOFORM (ODC-AZ-S). length=214;2e-59 /// OAZ_RAT // Gene:OAZ1 Gene:OAZ ORNITHINE DECARBOXYLASE ANTIZYME (ODC-AZ). length=226;1e-74 /// Q9UPL9 // Gene-TRE:OAZ ODC ANTIZYME-ORF2 (FRAGMENT). length=160;5e-90" Msa.2985.0_at Mu11KsubB // ornithine decarboxylase antizyme Curated Ortholog /// 1428868_a_at MOE430A // ornithine decarboxylase antizyme Curated Ortholog /// AA267482_i_at Mu11KsubA // ornithine decarboxylase antizyme Curated Ortholog /// 101013_at MG-U74Av2 // ornithine decarboxylase antizyme Curated Ortholog /// 168602_i_at MG-U74Cv2 // ornithine decarboxylase antizyme Curated Ortholog /// 1436292_a_at MOE430A // ornithine decarboxylase antizyme Curated Ortholog /// u52823_s_at Mu11KsubA // ornithine decarboxylase antizyme Curated Ortholog /// 161360_at MG-U74Av2 // ornithine decarboxylase antizyme Curated Ortholog /// AA267482_f_at Mu11KsubA // ornithine decarboxylase antizyme Curated Ortholog chr19p13.3 // 2341074-2342558 // + // 98 "Hs.405050 // 1 // BC035151 // ESTs, Weakly similar to I38591 ornithine decarboxylase antizyme - human (fragment) [H.sapiens] // chr19 // 2339953-2342781 // + /// Hs.281960 // 4 // NM_004152 // ornithine decarboxylase antizyme 1 // chr19 // 2338816-2342624 // +" 200078_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank BC005876.1 "gb:BC005876.1 /DEF=Homo sapiens, ATPase, H+ transporting, lysosomal (vacuolar proton pump) 21kD, clone MGC:4498, mRNA, complete cds. /FEA=mRNA /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump) 21kD /DB_XREF=gi:13543437 /FL=gb:BC005876.1" g13543437 g13543437 "1500074373 (2 transcripts, 1 gene cluster)" "ATPase, H+ transporting, lysosomal 21kDa, V0 subunit c''" ATP6V0B Chr:1p32.3 Hs.7476 533 Q16467 /// Q99437 EC:3.6.3.14 --- ENSG00000117410 --- "NM_004047 // ATPase, H+ transporting, lysosomal 21kD, V0 subunit c''" 15992 // proton transport // predicted/computed 219 // vacuolar hydrogen-transporting ATPase // predicted/computed /// 16021 // integral to membrane // predicted/computed 5215 // transporter // predicted/computed /// 3936 // hydrogen-transporting two-sector ATPase // extended:Unknown; ATP-synt_C; 2e-06 /// 4002 // adenosinetriphosphatase // predicted/computed "Active transporter, primary // predicted/computed /// Hydrolase // predicted/computed" --- Integral membrane // predicted/computed --- Unspecified membrane // predicted/computed --- MAP00193 // ATP synthesis /// MAP02040 // Flagellar assembly /// MAP03070 // Type III secretion system "IPR002379 // H+-transporting two-sector ATPase, C subunit /// IPR000245 // Vacuolar H+-transporting two-sector ATPase, C subunit" ATP-synt_C // ATP synthase subunit C;4.6e-16 PR00122 // Vacuolar ATP synthase 16kD subunit signature;2.5e-17 --- numtm:5;Nin-prob:0.99492;type:signal;type:tm;type:tm;type:tm;type:tm; --- "4757816 // ATPase, H+ transporting, lysosomal 21kD, V0 subunit c''; vacuolar ATP synthase 21 kDa proteolipid subunit; vacuolar proton pump, 21-kD subunit; H(+)-transporting two-sector ATPase, subunit F [Homo sapiens];e-113 /// 14318761 // Similar to ATPase, H+ transporting, lysosomal (vacuolar proton pump) 21kD [Mus musculus];e-110" "Q9VFE5 // Gene-TRE:CG7026 CG7026 PROTEIN. length=201;2e-54 /// Q91VS4 // SIMILAR TO ATPASE, H+ TRANSPORTING, LYSOSOMAL (VACUOLAR PROTON PUMP) 21KD. length=205;1e-111 /// Q91V37 // Gene-TRE:ATP6F 23-KDA SUBUNIT OF V-ATPASE (VACUOLAR PROTON-TRANSLOCATING ATPASE 21 KDA SUBUNIT) (23-KDA PROTEOLIPID). length=205;1e-111 /// VATO_HUMAN // Gene:ATP6F Vacuolar ATP synthase 21 kDa proteolipid subunit (EC 3.6.3.14) (HATPL). length=205;1e-114 /// Q22087 // T01H3.1 PROTEIN. length=214;3e-64 /// Q16467 // ATPASE HOMOLOG (FRAGMENT). length=43;1e-12" "J03179_g_at RG-U34A // 89.61% D site albumin promoter binding protein Putative Ortholog /// 1387874_at RAE230A // 89.61% D site albumin promoter binding protein Putative Ortholog /// J03179_at RG-U34A // 89.61% D site albumin promoter binding protein Putative Ortholog /// aa396633_s_at Mu11KsubA // ATPase, H+ transporting, V0 subunit B Curated Ortholog /// 98104_at MG-U74Av2 // ATPase, H+ transporting, V0 subunit B Curated Ortholog /// 1416769_s_at MOE430A // ATPase, H+ transporting, V0 subunit B Curated Ortholog /// 1437013_x_at MOE430A // ATPase, H+ transporting, V0 subunit B Curated Ortholog" chr1p34.1 // 43442886-43444363 // + // 100 "Hs.7476 // 4 // NM_004047 // ATPase, H+ transporting, lysosomal 21kDa, V0 subunit c'' // chr1 // 43441033-43444389 // +" 200079_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank AF285758.1 "gb:AF285758.1 /DEF=Homo sapiens lysyl-tRNA synthetase mRNA, complete cds; nuclear gene for mitochondrial product; alternatively spliced. /FEA=CDS /PROD=lysyl-tRNA synthetase /DB_XREF=gi:11095908 /UG=Hs.3100 lysyl-tRNA synthetase /FL=gb:AF285758.1" g11095908 Hs.3100.1 "1500074374 (2 transcripts, 1 gene cluster)" lysyl-tRNA synthetase KARS Chr:16q23-q24 Hs.3100 3735 Q15046 /// Q9HB23 EC:6.1.1.6 --- ENSG00000065427 --- NM_005548 // lysyl-tRNA synthetase 6412 // protein biosynthesis // not recorded 5737 // cytoplasm // predicted/computed /// 5625 // soluble fraction // predicted/computed 3676 // nucleic acid binding // extended:Unknown; RNA_anti; 5.3e-18 /// 4824 // lysine-tRNA ligase // predicted/computed RNA-binding protein // predicted/computed /// tRNA synthetase // experimental evidence /// Ligase // experimental evidence RNA processing/modification // experimental evidence /// Protein synthesis // experimental evidence Soluble // predicted/computed --- Cytoplasmic // predicted/computed tRNA_Synthetases MAP00300 // Lysine biosynthesis /// MAP00970 // Aminoacyl-tRNA biosynthesis "IPR004364 // tRNA synthetase, class II (D, K and N) /// IPR004365 // OB-fold nucleic acid binding domain /// IPR002312 // Aspartyl-tRNA synthetase, class IIb /// IPR002313 // Lysyl-tRNA synthetase, class-2" "tRNA_anti // OB-fold nucleic acid binding domain;5.3e-18 /// tRNA-synt_2 // tRNA synthetases class II (D, K and N);1e-206" IPB002106 // Aminoacyl-transfer RNA synthetases class-II;5.9e-10 d1e1oa2 // d.104.1.1 // Lysyl-tRNA synthetase (LysRS) ;9.95e-121 /// d1bbua1 // b.40.4.1 // Lysyl-tRNA synthetase (LysRS) ;2.46e-42 --- EC:6.1.1.6 // SYK_HUMAN LYSYL-TRNA SYNTHETASE (EC 6.1.1.6) (LYSINE--TRNA LIGASE) (LYSRS).;2.28e-206 5031815 // lysyl-tRNA synthetase; lysine tRNA ligase [Homo sapiens];0.0 /// 505108 // similar to lysyl tRNA synthetase. [Homo sapiens];0.0 Q9HB23 // LYSYL-TRNA SYNTHETASE. length=625;0 /// Q9LJT0 // SIMILARITY TO LYSYL-TRNA SYNTHETASE. length=61;2e-20 1372850_at RAE230A // 89.05% ESTs Putative Ortholog /// rc_AA799464_at RG-U34A // 89.05% ESTs Putative Ortholog /// 1416068_at MOE430A // lysyl-tRNA synthetase Curated Ortholog /// 96324_at MG-U74Av2 // lysyl-tRNA synthetase Curated Ortholog /// aa692247_at Mu11KsubA // lysyl-tRNA synthetase Curated Ortholog /// Msa.3748.0_s_at Mu11KsubB // lysyl-tRNA synthetase Curated Ortholog /// 171489_i_at MG-U74Cv2 // lysyl-tRNA synthetase Curated Ortholog chr16q23.1 // 76622281-76625768 // - // 100 Hs.3100 // 6 // NM_005548 // lysyl-tRNA synthetase // chr16 // 76622051-76641999 // - 200080_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank BE869922 "Consensus includes gb:AI955655 /FEA=EST /DB_XREF=gi:5747965 /DB_XREF=est:wt36f03.x1 /CLONE=IMAGE:2509565 /UG=Hs.181307 H3 histone, family 3A" Hs.181307.5.A1 Hs.181307.5 "1500074375 (3 transcripts, 1 gene cluster)" --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- "O13590 // Gene-TRE:HHT2 Gene-TRE:YNL031C HHT2 PROTEIN (FRAGMENT). length=63;2e-28 /// H31_HUMAN // SW:P02295 SW:P02296 Gene:H3FA Gene:H3FC Gene:H3FD Gene:H3FF Gene:H3FH Gene:H3FI Gene:H3FJ AND Gene:H3FK Gene:H3FL Histone H3.1 (H3/a) (H3/c) (H3/d) (H3/f) (H3/h) (H3/i) (H3/j) (H3/k) (H3/l). length=135;2e-56 /// H33_CAEEL // Gene:F45E1.6 Histone H3.3. length=135;9e-59 /// Q8VDJ2 // H3 HISTONE, FAMILY 3B. length=136;4e-59 /// H33_HUMAN // SW:P33155 SW:Q9V3W4 Gene:H3F3A Gene:HIS3.3A Gene:CG5825 Gene:H3F3B Gene:HISH3-3Q Gene:HIS3.3B OR Gene:CG8989 Histone H3.3 (H3.A) (H3.B) (H3.3Q). length=135;4e-59 /// Q12681 // Gene-TRE:HHT2 Gene-TRE:YNL031C HISTONE H3 (FRAGMENT). length=34;6e-11 /// H3_CAEEL // Gene:HIS-9 Gene:F22B3.2 Gene:B0035.10 Gene:HIS-6 Gene:F45F2.13 Gene:F54E12.1 Gene:AND F55G1.2 Gene:K06C4.5 Gene:K06C4.13 Gene:ZK131.2 Gene:ZK131.3 AND Gene:ZK131.7 Histone H3. length=135;3e-55 /// Q9V3W4 // Gene-TRE:HIS3.3A Gene-TRE:HIS3.3B HIS3.3A AND HIS3.3B PROTEIN. length=136;1e-59 /// H3_DROME // Gene:HIS3 Histone H3. length=135;2e-56 /// H31_HUMAN // SW:P02295 SW:P02296 Gene:H3FA Gene:H3FC Gene:H3FD Gene:H3FF Gene:H3FH Gene:H3FI Gene:H3FJ AND Gene:H3FK Gene:H3FL Histone H3.1 (H3/a) (H3/c) (H3/d) (H3/f) (H3/h) (H3/i) (H3/j) (H3/k) (H3/l). length=135;1e-56 /// Q9TW44 // Gene-TRE:T10C6.13 Gene-TRE:HIS-9 Gene-TRE:F08G2.3 Gene-TRE:2O113 T10C6.13 PROTEIN (HISTONE H3). length=136;4e-56 /// H32_BOVIN // SW:P02295 SW:P02297 SW:P17320 SW:P17269 Histone H3 (H3.2). length=135;3e-57 /// Q9FKQ3 // HISTONE H3. length=139;1e-53 /// H3_MAIZE // SW:P05329 SW:P05330 Gene:H3C2 Gene:H3C4 Histone H3. length=135;3e-56 /// H33_HUMAN // SW:P33155 SW:Q9V3W4 Gene:H3F3A Gene:HIS3.3A Gene:CG5825 Gene:H3F3B Gene:HISH3-3Q Gene:HIS3.3B OR Gene:CG8989 Histone H3.3 (H3.A) (H3.B) (H3.3Q). length=135;8e-59 /// H34_MOUSE // Histone H3.4 (Embryonic). length=134;1e-48 /// H3B_HUMAN // Gene:H3FB Histone H3/b. length=135;2e-55 /// Q27490 // Gene-TRE:E03A3.4 E03A3.4 PROTEIN. length=126;7e-42 /// Q9U281 // Gene-TRE:Y49E10.6 Y49E10.6 PROTEIN. length=136;5e-59 /// H32_MEDSA // Histone H3.2, minor. length=135;6e-56 /// H33_HUMAN // SW:P33155 SW:Q9V3W4 Gene:H3F3A Gene:HIS3.3A Gene:CG5825 Gene:H3F3B Gene:HISH3-3Q Gene:HIS3.3B OR Gene:CG8989 Histone H3.3 (H3.A) (H3.B) (H3.3Q). length=135;2e-59" --- chr13q21.33 // 66244575-66245022 // + // 97 --- 200081_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank BE741754 Consensus includes gb:BE741754 /FEA=EST /DB_XREF=gi:10155746 /DB_XREF=est:601595220F1 /CLONE=IMAGE:3949109 /UG=Hs.241507 ribosomal protein S6 Hs.241507.3.S1 Hs.241507.3 "1500074376 (3 transcripts, 1 gene cluster)" ribosomal protein S6 RPS6 Chr:9p21 Hs.380843 6194 P10660 /// Q8N6Z7 /// Q96DV6 --- 180460 ENSG00000137154 --- NM_001010 // ribosomal protein S6 6412 // protein biosynthesis // predicted/computed 5843 // cytosolic small ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR001377 // Ribosomal protein S6e Ribosomal_S6e // Ribosomal protein S6e;1.8e-90 IPB001377 // Ribosomal protein S6e;7.5e-133 --- --- --- 6677809 // ribosomal protein S6 [Mus musculus];e-137 /// 20381196 // ribosomal protein S6 [Homo sapiens];e-137 --- 1367573_at RAE230A // ribosomal protein S6 Curated Ortholog /// 1398988_at RAE230A // ribosomal protein S6 Curated Ortholog /// 1380522_at RAE230B // ESTs Curated Ortholog /// rc_AI071946_at RG-U34C // ribosomal protein S6 Curated Ortholog /// 1385634_at RAE230B // ribosomal protein S6 Curated Ortholog /// M29358_at RG-U34A // ribosomal protein S6 Curated Ortholog /// rc_AI178582_s_at RG-U34C // ribosomal protein S6 Curated Ortholog /// rc_AA817959_at RG-U34C // ribosomal protein S6 Curated Ortholog /// M29358_g_at RG-U34A // ribosomal protein S6 Curated Ortholog /// rc_AI060201_at RG-U34B // ESTs Curated Ortholog /// rc_AI136296_at RG-U34C // ribosomal protein S6 Curated Ortholog /// 1416141_a_at MOE430A // ribosomal protein S6 Curated Ortholog /// 1437246_x_at MOE430A // ribosomal protein S6 Curated Ortholog /// 1434377_x_at MOE430A // ribosomal protein S6 Curated Ortholog /// 1435816_at MOE430A // ribosomal protein S6 Curated Ortholog /// 1435817_x_at MOE430A // ribosomal protein S6 Curated Ortholog /// 1416142_at MOE430A // ribosomal protein S6 Curated Ortholog /// 1454620_x_at MOE430A // ribosomal protein S6 Curated Ortholog /// 101577_at MG-U74Av2 // ribosomal protein S6 Curated Ortholog /// 1435962_at MOE430A // ribosomal protein S6 Curated Ortholog /// 1455693_x_at MOE430A // ribosomal protein S6 Curated Ortholog /// 1455981_at MOE430A // ribosomal protein S6 Curated Ortholog chr9p22.1 // 19565567-19568516 // - // 100 "Hs.374785 // 1 // AK027187 // Homo sapiens cDNA: FLJ23534 fis, clone LNG06974, highly similar to HUMRPS6A Human ribosomal protein S6 mRNA, mRNA sequence // chr9 // 19565214-19569195 // - /// Hs.380843 // 9 // NM_001010 // ribosomal protein S6 // chr9 // 19565215-19569197 // -" 200082_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AI805587 Consensus includes gb:AI805587 /FEA=EST /DB_XREF=gi:5392153 /DB_XREF=est:tx97a02.x1 /CLONE=IMAGE:2277482 /UG=Hs.301547 ribosomal protein S7 Hs.301547.2 Hs.301547.2 "1500074377 (3 transcripts, 1 gene cluster)" ribosomal protein S7 RPS7 Chr:2p25 Hs.301547 6201 P23821 --- 603658 ENSG00000171863 --- NM_001011 // ribosomal protein S7 6412 // protein biosynthesis // predicted/computed 5843 // cytosolic small ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR000554 // Ribosomal protein S7E Ribosomal_S7e // Ribosomal protein S7e;1.3e-144 IPB000554 // Ribosomal protein S7E;2.7e-115 --- --- --- 4506741 // ribosomal protein S7; 40S ribosomal protein S7 [Homo sapiens];e-103 /// 20985952 // similar to 40S ribosomal protein S7 (S8) [Mus musculus];e-103 --- 1398751_at RAE230A // 85.33% ribosomal protein S7 Putative Ortholog /// rc_AI175486_at RG-U34A // 85.33% ribosomal protein S7 Putative Ortholog /// 1435593_x_at MOE430A // ribosomal protein S7 Curated Ortholog /// AA016480_at Mu11KsubA // ribosomal protein S7 Curated Ortholog /// 1419364_a_at MOE430A // ribosomal protein S7 Curated Ortholog /// 1455364_a_at MOE430A // ribosomal protein S7 Curated Ortholog chr17q11.2 // 28694690-28694989 // + // 98 /// chr17q21.31 // 47197867-47198167 // - // 98 /// chr2p25.3 // 3265500-3266529 // + // 98 Hs.301547 // 2 // NM_001011 // ribosomal protein S7 // chr2 // 3265176-3270818 // + 200083_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AA621731 Consensus includes gb:AA621731 /FEA=EST /DB_XREF=gi:2525670 /DB_XREF=est:af54h05.s1 /CLONE=IMAGE:1035513 /UG=Hs.12064 ubiquitin specific protease 22 Hs.12064.0 Hs.12064.0 --- ubiquitin specific protease 22 USP22 Chr:17p11.1 Hs.12064 23326 Q8TBS8 /// Q96IW5 /// Q9NSJ7 /// Q9UPT9 EC:3.1.2.15 --- --- --- --- --- --- --- --- --- --- --- --- --- --- "IPR001607 // Zn-finger in ubiquitin thiolesterase /// IPR000345 // Cytochrome c heme-binding site /// IPR001394 // Ubiquitin thiolesterase, family 2" --- --- --- --- --- --- Q96IW5 // SIMILAR TO NON-STOP (FRAGMENT). length=173;1e-90 /// Q96GI2 // SIMILAR TO NON-STOP (FRAGMENT). length=229;1e-123 /// UBPM_HUMAN // Gene:USP22 Gene:KIAA1063 Ubiquitin carboxyl-terminal hydrolase 22 (EC 3.1.2.15) (Ubiquitin thiolesterase 22) (Ubiquitin-specific processing protease 22) (Deubiquitinating enzyme 22) (Fragment). length=593;0 /// Q9NSJ7 // Gene-TRE:DKFZP434K1822 HYPOTHETICAL 29.8 KDA PROTEIN (FRAGMENT). length=264;1e-141 "1436004_at MOE430B // ubiquitin specific protease 27, X chromosome Curated Ortholog /// 1427606_at MOE430A // ubiquitin specific protease 27, X chromosome Curated Ortholog /// 163246_at MG-U74Bv2 // 83.36% hypothetical protein 9330200A01 Putative Ortholog /// 1437151_at MOE430B // 83.36% hypothetical protein 9330200A01 Putative Ortholog /// Msa.6620.0_s_at Mu11KsubB // 83.36% hypothetical protein 9330200A01 Putative Ortholog /// 97960_at MG-U74Av2 // 83.36% hypothetical protein 9330200A01 Putative Ortholog /// 1456043_at MOE430A // 83.36% hypothetical protein 9330200A01 Putative Ortholog /// 106531_at MG-U74Bv2 // 83.36% hypothetical protein 9330200A01 Putative Ortholog" chr17p11.2 // 22552152-22552670 // - // 100 Hs.12064 // 6 // AB028986 // ubiquitin specific protease 22 // chr17 // 22551980-22595423 // - 200084_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank BE748698 Consensus includes gb:BE748698 /FEA=EST /DB_XREF=gi:10162690 /DB_XREF=est:601571740T1 /CLONE=IMAGE:3838712 /UG=Hs.78050 small acidic protein Hs.78050.1.A1 Hs.78050.1 --- small acidic protein SMAP Chr:11p15.1 Hs.78050 10944 O00193 --- --- --- --- NM_014267 // small acidic protein --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 9790217 // small acidic protein; small acidic protein sid2057p [Mus musculus];3e-97 /// 7657234 // small acidic protein; likely ortholog of mouse small acidic protein [Homo sapiens];e-104 Q9R0P4 // Gene-TRE:SMAP Gene-TRE:SID2057 Gene-TRE:1110004F10RIK SID2057P (1110004F10RIK PROTEIN). length=181;1e-77 /// O00193 // SMALL ACIDIC PROTEIN. length=183;1e-83 rc_AI175045_at RG-U34C // 88.19% ESTs Putative Ortholog /// 1378074_at RAE230B // 88.19% ESTs Putative Ortholog /// c75942_rc_s_at Mu11KsubA // small acidic protein Curated Ortholog /// aa285615_s_at Mu11KsubA // small acidic protein Curated Ortholog /// 95411_at MG-U74Av2 // small acidic protein Curated Ortholog /// 1423335_at MOE430A // small acidic protein Curated Ortholog chr11p15.2 // 17524463-17524924 // + // 99 /// chr14q21.2 // 38385211-38385676 // - // 98 Hs.78050 // 6 // NM_014267 // small acidic protein // chr11 // 17507773-17525017 // + 200085_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank NM_007108.1 "Consensus includes gb:NM_007108.1 /DEF=Homo sapiens transcription elongation factor B (SIII), polypeptide 2 (18kD, elongin B) (TCEB2), mRNA. /FEA=CDS /GEN=TCEB2 /PROD=elongin B /DB_XREF=gi:6005889 /UG=Hs.172772 transcription elongation factor B (SIII), polypeptide 2 (18kD, elongin B) /FL=gb:NM_007108.1 gb:L42856.1" Hs.172772.2.A1 Hs.172772.2 "1500074378 (3 transcripts, 1 gene cluster)" "transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B)" TCEB2 Chr:16p12.3 Hs.172772 6923 Q15370 --- --- ENSG00000103363 --- NM_007108 // elongin B 6461 // protein complex assembly // experimental evidence /// 6368 // RNA elongation from Pol II promoter // experimental evidence --- 5515 // protein binding // experimental evidence Regulatory subunit // experimental evidence /// Activator // experimental evidence Protein degradation // experimental evidence /// Pol II transcription // experimental evidence --- --- --- --- --- IPR000626 // Ubiquitin domain ubiquitin // Ubiquitin family;0.00021 IPB000626 // Ubiquitin domain;3.5e-12 d1vcba_ // d.15.1.1 // Elongin B ;7.06e-44 --- --- "13385800 // RIKEN cDNA 0610040H15 [Mus musculus];2e-60 /// 6005890 // elongin B; transcription elongation factor B (SIII), polypeptide 2 (18kD, elongin B); transcription elongation factor B, polypeptide 2 [Homo sapiens];9e-63" "Q15370 // RNA POLYMERASE II TRANSCRIPTION FACTOR SIII P18 SUBUNIT (ELONGIN B) (SIMILAR TO TRANSCRIPTION ELONGATION FACTOR B (SIII), POLYPEPTIDE 2) (18KD, ELONGIN B). length=118;3e-63 /// Q923B2 // SIMILAR TO RIKEN CDNA 0610040H15 GENE. length=65;6e-11 /// Q9D7T5 // Gene-TRE:2210409E12RIK 2210409E12RIK PROTEIN. length=100;7e-33 /// Q63529 // Gene-TRE:0610040H15RIK RNA POLYMERASE II TRANSCRIPTION FACTOR SIII P18 SUBUNIT (0610040H15RIK PROTEIN). length=118;4e-61 /// O44226 // Gene-TRE:ELONGIN-B Gene-TRE:CG4204 ELONGIN B (ELONGIN-B PROTEIN). length=118;5e-29 /// Q63529 // Gene-TRE:0610040H15RIK RNA POLYMERASE II TRANSCRIPTION FACTOR SIII P18 SUBUNIT (0610040H15RIK PROTEIN). length=118;1e-61" "1398837_at RAE230A // 89.94% transcription elongation factor B (SIII) polypeptide 2 (18kD, elongin B) Putative Ortholog /// 1379272_at RAE230A // 89.94% ESTs, Highly similar to polyadenylate binding protein-interacting protein 1 [Homo sapiens] [H.sapiens] Putative Ortholog /// L42855_at RG-U34A // 89.94% transcription elongation factor B (SIII) polypeptide 2 (18kD, elongin B) Putative Ortholog /// rc_AI639045_at RG-U34A // 89.94% ESTs, Highly similar to polyadenylate binding protein-interacting protein 1 [Homo sapiens] [H.sapiens] Putative Ortholog /// rc_AI230202_at RG-U34C // 89.94% ESTs, Highly similar to polyadenylate binding protein-interacting protein 1 [Homo sapiens] [H.sapiens] Putative Ortholog /// 1379335_at RAE230A // 89.94% ESTs, Highly similar to polyadenylate binding protein-interacting protein 1 [Homo sapiens] [H.sapiens] Putative Ortholog /// 1436949_a_at MOE430A // RIKEN cDNA 0610040H15 gene Curated Ortholog /// 1428263_a_at MOE430A // RIKEN cDNA 0610040H15 gene Curated Ortholog /// 160402_at MG-U74Av2 // RIKEN cDNA 0610040H15 gene Curated Ortholog /// aa049941_s_at Mu11KsubA // RIKEN cDNA 0610040H15 gene Curated Ortholog /// 162470_at MG-U74Av2 // RIKEN cDNA 0610040H15 gene Curated Ortholog" chr16p13.3 // 2855286-2860369 // - // 100 "Hs.172772 // 3 // NM_007108 // transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) // chr16 // 2855265-2860404 // -" 200086_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AA854966 Consensus includes gb:AA854966 /FEA=EST /DB_XREF=gi:2942504 /DB_XREF=est:aj70d12.s1 /CLONE=IMAGE:1401815 /UG=Hs.113205 cytochrome c oxidase subunit IV Hs.113205.2 Hs.113205.2 "1500074379 (3 transcripts, 1 gene cluster)" cytochrome c oxidase subunit IV isoform 1 COX4I1 Chr:16q22-qter Hs.433419 1327 P13073 EC:1.9.3.1 123864 ENSG00000131143 --- NM_001861 // cytochrome c oxidase subunit IV isoform 1 precursor 6091 // energy pathways // predicted/computed --- 4129 // cytochrome c oxidase // predicted/computed --- Energy generation // predicted/computed --- General cellular role // not recorded Mitochondrial // not recorded Electron_Transport_Chain MAP00190 // Oxidative phosphorylation IPR004203 // Cytochrome c oxidase subunit IV COX4 // Cytochrome c oxidase subunit IV;2e-69 --- --- numtm:1;Nin-prob:0.90884;type:tm; --- "117085 // Cytochrome c oxidase subunit IV isoform 1, mitochondrial precursor (COX IV-1) (Cytochrome c oxidase polypeptide IV);8e-82 /// 4502981 // cytochrome c oxidase subunit IV isoform 1 precursor; cytochrome c oxidase subunit IV [Homo sapiens];8e-95" --- "rc_AA818226_s_at RG-U34A // cytochrome c oxidase, subunit 4a Curated Ortholog /// 1367607_at RAE230A // cytochrome c oxidase, subunit 4a Curated Ortholog /// rc_AA818226_s_at RT-U34 // cytochrome c oxidase, subunit 4a Curated Ortholog /// 1448322_a_at MOE430A // cytochrome c oxidase, subunit IVa Curated Ortholog /// 1423365_at MOE430A // Mus musculus T calcium channel alpha1G subunit +34+35 splice variant (Cacna1g) mRNA, partial cds. Curated Ortholog /// 102124_f_at MG-U74Av2 // cytochrome c oxidase, subunit IVa Curated Ortholog /// x54691_f_at Mu11KsubB // cytochrome c oxidase, subunit IVa Curated Ortholog /// 93788_at MG-U74Av2 // cytochrome c oxidase, subunit IVa Curated Ortholog" chr16q24.1 // 86871695-86873735 // + // 99 "Hs.373513 // 1 // AK027136 // Homo sapiens cDNA: FLJ23483 fis, clone KAIA04052, mRNA sequence // chr16 // 86869802-86873748 // + /// Hs.433419 // 5 // NM_001861 // cytochrome c oxidase subunit IV isoform 1 // chr16 // 86866335-86873748 // +" 200087_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AK024976.1 "Consensus includes gb:AK024976.1 /DEF=Homo sapiens cDNA: FLJ21323 fis, clone COL02374. /FEA=mRNA /DB_XREF=gi:10437405 /UG=Hs.75914 Homo sapiens cDNA: FLJ21323 fis, clone COL02374" Hs.75914.0 Hs.75914.0 "1500074380 (2 transcripts, 1 gene cluster)" coated vesicle membrane protein RNP24 Chr:12q24.31 Hs.75914 10959 AAH25957 /// Q15363 --- --- ENSG00000086598 --- NM_006815 // coated vesicle membrane protein 6886 // intracellular protein transport // predicted/computed 5886 // plasma membrane // experimental evidence /// 16021 // integral to membrane // experimental evidence /// 5792 // microsome // experimental evidence 8320 // protein carrier // extended:Unknown; EMP24_GP25L; 4.2e-83 --- --- Integral membrane // not recorded --- Microsomal fraction // experimental evidence /// Unspecified membrane // not recorded --- --- IPR000348 // emp24/gp25L/p24 family EMP24_GP25L // emp24/gp25L/p24 family;4.2e-83 IPB000348 // emp24/gp25L/p24 family;5.2e-36 --- numtm:2;Nin-prob:0.44776;type:signal;type:tm; --- 5803149 // coated vesicle membrane protein [Homo sapiens];e-110 /// 13929014 // coated vesicle membrane protein [Rattus norvegicus];e-110 P24_RAT // Gene:RNP24 COP-COATED VESICLE MEMBRANE PROTEIN P24 PRECURSOR (P24A) (RNP21.4). length=201;8e-16 /// P24_MOUSE // Gene:SID394 COP-COATED VESICLE MEMBRANE PROTEIN P24 PRECURSOR (P24A). length=201;2e-15 /// P24_HUMAN // Gene:RNP24 Cop-coated vesicle membrane protein p24 precursor (p24A). length=201;4e-15 X92097_at RG-U34A // 91.07% coated vesicle membrane protein Putative Ortholog /// rc_AI014114_at RG-U34B // 91.07% ESTs Putative Ortholog /// 1376642_at RAE230A // 91.07% ESTs Putative Ortholog /// 1398824_at RAE230A // 91.07% coated vesicle membrane protein Putative Ortholog /// 1431036_a_at MOE430A // coated vesicle membrane protein Curated Ortholog /// aa538556_g_at Mu11KsubA // coated vesicle membrane protein Curated Ortholog /// 1436452_x_at MOE430A // coated vesicle membrane protein Curated Ortholog /// 93818_g_at MG-U74Av2 // coated vesicle membrane protein Curated Ortholog /// 93819_at MG-U74Av2 // coated vesicle membrane protein Curated Ortholog /// 161406_at MG-U74Av2 // coated vesicle membrane protein Curated Ortholog /// 1420867_at MOE430A // coated vesicle membrane protein Curated Ortholog /// 1455968_x_at MOE430A // coated vesicle membrane protein Curated Ortholog /// 93817_at MG-U74Av2 // coated vesicle membrane protein Curated Ortholog /// 1436451_a_at MOE430A // coated vesicle membrane protein Curated Ortholog /// aa538556_at Mu11KsubA // coated vesicle membrane protein Curated Ortholog /// 1420868_s_at MOE430A // coated vesicle membrane protein Curated Ortholog chr12q24.31 // 123838534-123839006 // - // 94 --- 200088_x_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AK026491.1 "Consensus includes gb:AK026491.1 /DEF=Homo sapiens cDNA: FLJ22838 fis, clone KAIA4494, highly similar to HUML12A Human ribosomal protein L12 mRNA. /FEA=mRNA /DB_XREF=gi:10439364 /UG=Hs.182979 ribosomal protein L12" Hs.182979.1_RC Hs.182979.1 "1500074381 (19 transcripts, 16 gene clusters)" ribosomal protein L12 RPL12 Chr:9q34 Hs.405042 6136 P30050 --- --- --- --- NM_000976 // ribosomal protein L12 --- 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // not recorded 3723 // RNA binding // not recorded /// 3735 // structural protein of ribosome // not recorded RNA-binding protein // not recorded /// Ribosomal subunit // not recorded Protein synthesis // not recorded Ribosome-associated // not recorded General cellular role // not recorded --- --- --- IPR000911 // Ribosomal protein L11 "Ribosomal_L11 // Ribosomal protein L11, RNA binding do;1.3e-28 /// Ribosomal_L11_N // Ribosomal protein L11, N-terminal dom;1.1e-24" IPB000911 // Ribosomal protein L11;2.1e-45 "d1mmsa1 // a.4.7.1 // Ribosomal protein L11, C-terminal domain ;2.13e-09" --- --- "20824222 // similar to data source:MGD, source key:MGI:98002, evidence:ISS~putative~ribosomal protein L12 [Mus musculus];3e-90 /// 4506597 // ribosomal protein L12; 60S ribosomal protein L12 [Homo sapiens];2e-90" Q9NQE4 // Gene-TRE:DJ661I20.1 DJ661I20.1 (SIMILAR TO RPL12 (RIBOSOMAL PROTEIN L12)). length=167;7e-64 /// RL12_MOUSE // Gene:RPL12 60S RIBOSOMAL PROTEIN L12. length=165;3e-40 /// Q9CQK4 // Gene-TRE:RPL12 RIBOSOMAL PROTEIN L12. length=165;1e-40 /// RL12_RAT // Gene:RPL12 60S RIBOSOMAL PROTEIN L12. length=165;3e-41 /// Q9LFH5 // Gene-TRE:F4P12_130 60S RIBOSOMAL PROTEIN L12-LIKE. length=166;6e-29 /// RL12_CAEEL // Gene:RPL-12 Gene:JC8.3 60S ribosomal protein L12. length=165;8e-34 /// RL12_ARATH // SW:Q9ZQD3 Gene:RPL12 Gene:AT2G37190 Gene:T2N18.5 60S RIBOSOMAL PROTEIN L12. length=166;6e-29 /// Q9FF52 // 60S RIBOSOMAL PROTEIN L12 (AT5G60670/MUP24_80). length=166;6e-29 /// Q9W1B9 // Gene-TRE:RPL12 Gene-TRE:CG3195 Gene-TRE:CG10485 CG3195 PROTEIN. length=165;1e-34 /// Q9NQ02 // Gene-TRE:DJ999L4.1 DJ999L4.1 (NOVEL PROTEIN SIMILAR TO RIBOSOMAL PROTEIN L12 (RPL12)). length=165;6e-39 /// RL12_HUMAN // Gene:RPL12 60S ribosomal protein L12. length=165;2e-40 /// RL12_YEAST // SW:P05741 Gene:RPL12A Gene:RPL15B Gene:YEL054C Gene:RPL12B Gene:RPL15A Gene:YDR418W OR Gene:D9461.7 60S RIBOSOMAL PROTEIN L12 (L15) (YL23). length=165;3e-57 /// O60886 // Gene-TRE:CICK0721Q.2 Gene-TRE:RPL12 CICK0721Q.2 (60S RIBOSOMAL PROTEIN L12 LIKE PROTEIN). length=165;2e-38 --- chr2q33.2 // 202780153-202780639 // + // 99 /// chr20q13.2 // 53379562-53380047 // + // 98 /// chr9q33.3 // 121856694-121860127 // - // 99 "Hs.381681 // 1 // BC008230 // Ribosomal protein L12 [Homo sapiens], mRNA sequence // chr2 // 202780068-202780700 // + /// Hs.381681 // 1 // BC008230 // Ribosomal protein L12 [Homo sapiens], mRNA sequence // chr20 // 53379478-53380089 // + /// Hs.381681 // 1 // BC008230 // Ribosomal protein L12 [Homo sapiens], mRNA sequence // chr9 // 121856496-121860212 // - /// Hs.405042 // 4 // NM_000976 // ribosomal protein L12 // chr9 // 121856493-121860223 // -" 200089_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AI953886 Consensus includes gb:AI953886 /FEA=EST /DB_XREF=gi:5746196 /DB_XREF=est:wx70g02.x1 /CLONE=IMAGE:2549042 /UG=Hs.286 ribosomal protein L4 Hs.286.4_RC Hs.286.4 "1500074382 (5 transcripts, 2 gene clusters)" ribosomal protein L4 RPL4 Chr:15q22 Hs.286 6124 P36578 --- 180479 ENSG00000174444 --- NM_000968 // ribosomal protein L4 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR002136 // Ribosomal protein L4/L1e /// IPR002086 // Aldehyde dehydrogenase Ribosomal_L4 // Ribosomal protein L4/L1 family;8.6e-151 IPB002136 // Ribosomal protein L4/L1e;2.3e-154 d1jj2c_ // c.22.1.1 // Ribosomal protein L4 ;4.53e-100 --- --- 16579885 // ribosomal protein L4; 60S ribosomal protein L4; homologue of Xenopus ribosomal protein L1 [Homo sapiens];0.0 /// 7440597 // ribosomal protein L4 - human;0.0 RL4_HUMAN // SW:P39029 SW:Q969Z9 Gene:RPL4 Gene:RPL1 60S ribosomal protein L4 (L1). length=427;1e-174 /// Q9BSV5 // SIMILAR TO RIBOSOMAL PROTEIN L4. length=333;1e-118 /// RL4_MOUSE // SW:Q9CY08 Gene:RPL4 60S ribosomal protein L4 (L1). length=419;1e-149 /// Q969Z9 // Gene-TRE:RPL4 SIMILAR TO RIBOSOMAL PROTEIN L4. length=427;1e-174 /// Q9CY08 // Gene-TRE:2010004J23RIK 2010004J23RIK PROTEIN. length=419;1e-148 /// RL4_RAT // Gene:RPL4 Gene:RPL1 60S ribosomal protein L4 (L1). length=421;1e-147 rc_AA850940_at RG-U34A // 82.89% ribosomal protein L4 Putative Ortholog /// 1398749_at RAE230A // 82.89% ribosomal protein L4 Putative Ortholog /// 1425183_a_at MOE430A // RIKEN cDNA 2010004J23 gene Curated Ortholog /// C80263_rc_f_at Mu11KsubA // RIKEN cDNA 2010004J23 gene Curated Ortholog chr15q22.31 // 59890708-59891729 // - // 98 /// chr3q27.2 // 186318236-186318745 // - // 98 Hs.286 // 7 // BC007748 // ribosomal protein L4 // chr3 // 186318175-186319626 // - 200090_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank BG168896 "Consensus includes gb:BG168896 /FEA=EST /DB_XREF=gi:12675599 /DB_XREF=est:602320235F1 /CLONE=IMAGE:4415240 /UG=Hs.138381 farnesyltransferase, CAAX box, alpha" Hs.138381.1.A1 Hs.138381.1 --- "farnesyltransferase, CAAX box, alpha" FNTA Chr:8p22-q11 Hs.356463 2339 P49354 /// Q8N3Y2 EC:2.5.1 134635 --- --- "NM_002027 // farnesyltransferase, CAAX box, alpha" 6503 // C-terminal protein farnesylation // experimental evidence /// 7179 // TGFbeta receptor signaling pathway // experimental evidence /// 6504 // C-terminal protein geranylgeranylation // experimental evidence 5737 // cytoplasm // experimental evidence 8318 // protein prenyltransferase // extended:Unknown; PPTA; 1.6e-09 /// 4661 // protein geranylgeranyltransferase // experimental evidence /// 4660 // protein farnesyltransferase // experimental evidence Transferase // experimental evidence --- --- --- Cytoplasmic // not recorded --- --- "IPR002088 // Protein prenyltransferase, alpha subunit" PPTA // Protein prenyltransferase alpha subunit repe;3.5e-62 IPB003861 // E4 protein;0.007 d1jcqa_ // a.118.6.1 // Protein farnesyltransferase alpha-subunit ;1.71e-95 --- --- "21730715 // Chain A, Co-Crystal Structure Of Human Farnesyltransferase With Farnesyldiphosphate And Inhibitor Compound 66;0.0 /// 4503771 // farnesyltransferase, CAAX box, alpha [Homo sapiens];0.0" "Q9UDC1 // FARNESYLTRANSFERASE ALPHA SUBUNIT. length=379;1e-110 /// PFTA_HUMAN // SW:Q9UDC1 Gene:FNTA Protein farnesyltransferase alpha subunit (EC 2.5.1.-) (CAAX farnesyltransferase alpha subunit) (RAS proteins prenyltransferase alpha) (FTase-alpha). length=379;1e-111 /// Q921F7 // SIMILAR TO FARNESYLTRANSFERASE, CAAX BOX, ALPHA. length=377;7e-88 /// PFTA_RAT // Gene:FNTA Protein farnesyltransferase alpha subunit (EC 2.5.1.-) (CAAX farnesyltransferase alpha subunit) (RAS proteins prenyltransferase alpha) (FTase-alpha). length=377;2e-89 /// PFTA_MOUSE // Gene:FNTA PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT (EC 2.5.1.-) (CAAX FARNESYLTRANSFERASE ALPHA SUBUNIT) (RAS PROTEINS PRENYLTRANSFERASE ALPHA) (FTASE-ALPHA). length=377;2e-88" "M81225_at RG-U34A // Farnesyltransferase, subunit alpha Curated Ortholog /// 1367824_at RAE230A // Farnesyltransferase, subunit alpha Curated Ortholog /// D49744_s_at Mu11KsubA // farnesyltransferase, CAAX box, alpha Curated Ortholog /// 1417465_at MOE430A // farnesyltransferase, CAAX box, alpha Curated Ortholog /// 98121_at MG-U74Av2 // farnesyltransferase, CAAX box, alpha Curated Ortholog /// 1447904_s_at MOE430B // farnesyltransferase, CAAX box, alpha Curated Ortholog" chr8p11.21 // 43010191-43010568 // + // 100 "Hs.356463 // 5 // NM_002027 // farnesyltransferase, CAAX box, alpha // chr8 // 42981130-43010610 // +" 200091_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AA888388 Consensus includes gb:AA888388 /FEA=EST /DB_XREF=gi:3004063 /DB_XREF=est:nw79f03.s1 /CLONE=IMAGE:1252829 /UG=Hs.113029 ribosomal protein S25 Hs.113029.1_RC Hs.113029.1 "1500074383 (2 transcripts, 1 gene cluster)" ribosomal protein S25 RPS25 Chr:11q23.3 Hs.191304 6230 P25111 --- 180465 ENSG00000118181 --- NM_001028 // ribosomal protein S25 6412 // protein biosynthesis // predicted/computed 5843 // cytosolic small ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR004977 // S25 ribosomal protein Ribosomal_S25 // S25 ribosomal protein;1.6e-75 "IPB000524 // Bacterial regulatory proteins, GntR family;0.0029" --- --- --- "23633141 // similar to ribosomal protein S25, cytosolic [validated] - rat [Mus musculus];5e-66 /// 4506707 // ribosomal protein S25; 40S ribosomal protein S25 [Homo sapiens];4e-66" RS25_HUMAN // Gene:RPS25 40S ribosomal protein S25. length=125;3e-67 /// RS25_HUMAN // Gene:RPS25 40S ribosomal protein S25. length=125;1e-66 /// Q9T029 // Gene-TRE:T22F8.100 Gene-TRE:AT4G39200 RIBOSOMAL PROTEIN S25 (AT4G39200/T22F8_100). length=108;8e-30 /// RS25_CAEEL // Gene:RPS-25 Gene:K02B2.5 40S ribosomal protein S25. length=117;2e-36 /// Q9SIK2 // Gene-TRE:AT2G21580 40S RIBOSOMAL PROTEIN S25 (AT2G21580/F2G1.15). length=108;5e-30 /// RS25_HUMAN // Gene:RPS25 40S ribosomal protein S25. length=125;2e-66 --- chr11q23.3 // 120398248-120400559 // - // 100 /// chr5q23.1 // 115795024-115795416 // - // 98 Hs.191304 // 3 // BC003537 // ribosomal protein S25 // chr5 // 115794971-115795477 // - /// Hs.191304 // 3 // BC004294 // ribosomal protein S25 // chr5 // 115794971-115795477 // - 200092_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank BF216701 Consensus includes gb:BF216701 /FEA=EST /DB_XREF=gi:11110287 /DB_XREF=est:601884615F1 /CLONE=IMAGE:4103235 /UG=Hs.179779 ribosomal protein L37 Hs.179779.1 Hs.179779.1 "1500074384 (2 transcripts, 1 gene cluster)" ribosomal protein L34 RPL34 Chr:4q25 Hs.250895 6164 P02403 /// P49207 --- --- ENSG00000145592 --- NM_000995 // ribosomal protein L34 /// NM_000997 // ribosomal protein L37 /// NM_033625 // ribosomal protein L34 6412 // protein biosynthesis // predicted/computed 5842 // cytosolic large ribosomal subunit (sensu Eukarya) // predicted/computed 3735 // structural protein of ribosome // predicted/computed /// 3723 // RNA binding // predicted/computed RNA-binding protein // predicted/computed /// Ribosomal subunit // predicted/computed Protein synthesis // predicted/computed Ribosome-associated // predicted/computed General cellular role // predicted/computed Cytoplasmic // predicted/computed --- --- IPR001569 // Ribosomal protein L37e /// IPR001284 // Ribosomal protein L34e Ribosomal_L34e // Ribosomal protein L34e;1e-65 /// Ribosomal_L37e // Ribosomal protein L37e;2e-33 IPB001569 // Ribosomal protein L37e;9.9e-32 /// IPB001284 // Ribosomal protein L34e;3e-47 --- --- --- "4506641 // ribosomal protein L37; 60S ribosomal protein L37; G1.16 [Homo sapiens];4e-53 /// 20826384 // similar to 60S ribosomal protein L34 [Mus musculus];2e-60 /// 12842823 // data source:SPTR, source key:P02403, evidence:ISS~homolog to 60S RIBOSOMAL PROTEIN L37 (G1.16)~putative [Mus musculus];2e-52 /// 16117787 // ribosomal protein L34; 60S ribosomal protein L34 [Homo sapiens];8e-61" R37B_DROME // Gene:CG9873 Probable 60S ribosomal protein L37-B. length=89;5e-29 /// RL37_HUMAN // SW:Q99883 Gene:RPL37 60S ribosomal protein L37 (G1.16). length=96;5e-49 /// RL37_ARATH // SW:Q9C822 Gene:RPL37 Gene:AT1G52300 Gene:F19K6.12 60S ribosomal protein L37. length=95;4e-32 /// R37A_DROME // Gene:CG9091 Probable 60S ribosomal protein L37-A. length=93;5e-37 /// Q9C822 // Gene-TRE:F19K6.12 RIBOSOMAL PROTEIN L37. length=95;4e-32 /// Q9D823 // Gene-TRE:3110005M08RIK RIBOSOMAL PROTEIN L37. length=97;2e-48 /// RL37_HUMAN // SW:Q99883 Gene:RPL37 60S ribosomal protein L37 (G1.16). length=96;2e-48 /// R37A_YEAST // Gene:RPL37A Gene:RPL35A Gene:YLR185W Gene:L9470.6 60S ribosomal protein L37-A (L35) (YP55). length=87;7e-29 "rc_AA956855_at RN-U34 // 91.85% nuclear receptor subfamily 1, group H, member 2 Putative Ortholog /// 1389854_at RAE230A // 91.85% nuclear receptor subfamily 1, group H, member 2 Putative Ortholog /// rc_AA956855_at RG-U34A // 91.85% nuclear receptor subfamily 1, group H, member 2 Putative Ortholog /// X66369_at RG-U34A // 92.26% ribosomal protein L37 Putative Ortholog /// U14533_at RG-U34A // 91.85% nuclear receptor subfamily 1, group H, member 2 Putative Ortholog /// 1370208_at RAE230A // 91.85% nuclear receptor subfamily 1, group H, member 2 Putative Ortholog /// U14533_at RN-U34 // 91.85% nuclear receptor subfamily 1, group H, member 2 Putative Ortholog /// 1398789_at RAE230A // 92.26% ribosomal protein L37 Putative Ortholog /// 96309_r_at MG-U74Av2 // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog /// 1434872_x_at MOE430A // RIKEN cDNA 3110005M08 gene Curated Ortholog /// 1427875_a_at MOE430A // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog /// aa015377_f_at Mu11KsubA // RIKEN cDNA 3110005M08 gene Curated Ortholog /// 92577_f_at MG-U74Av2 // RIKEN cDNA 3110005M08 gene Curated Ortholog /// 1438291_x_at MOE430A // RIKEN cDNA 3110005M08 gene Curated Ortholog /// 1453729_a_at MOE430A // RIKEN cDNA 3110005M08 gene Curated Ortholog /// 1450838_x_at MOE430A // RIKEN cDNA 3110005M08 gene Curated Ortholog /// aa541910_r_at Mu11KsubA // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog /// 96307_s_at MG-U74Av2 // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog /// 96308_r_at MG-U74Av2 // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog /// aa541910_s_at Mu11KsubA // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog /// 1438655_a_at MOE430A // 89.78% RIKEN cDNA 1100001I22 gene Putative Ortholog /// 170891_at MG-U74Cv2 // RIKEN cDNA 3110005M08 gene Curated Ortholog /// 168190_at MG-U74Cv2 // RIKEN cDNA 3110005M08 gene Curated Ortholog" chr5p13.1 // 41924764-41927495 // - // 100 Hs.337445 // 2 // NM_000997 // ribosomal protein L37 // chr5 // 41924740-41927499 // - 200093_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank N32864 Consensus includes gb:N32864 /FEA=EST /DB_XREF=gi:1153263 /DB_XREF=est:yw88d08.s1 /CLONE=IMAGE:259311 /UG=Hs.256697 histidine triad nucleotide-binding protein Hs.256697.2.A1 Hs.256697.2 "1500074385 (3 transcripts, 1 gene cluster)" histidine triad nucleotide binding protein 1 HINT1 Chr:5q31.2 Hs.256697 3094 P49773 /// Q9H5W8 --- 601314 --- --- NM_005340 // histidine triad nucleotide binding protein 1 7165 // signal transduction // predicted/computed 5856 // cytoskeleton // experimental evidence /// 5634 // nucleus // predicted/computed 5080 // protein kinase C binding // predicted/computed /// 8270 // zinc binding // not recorded Other phosphatase // predicted/computed /// Hydrolase // predicted/computed /// Inhibitor or repressor // not recorded --- --- --- Cytoskeletal // experimental evidence /// Nuclear // experimental evidence --- --- IPR001310 // Histidine triad (HIT) protein HIT // HIT family;1.1e-63 IPB001310 // HIT (Histidine triad) family;1.5e-38 "d1kpf__ // d.13.1.1 // Protein kinase C inhibitor-1, PKCI-1 ;1.87e-40" --- "EC:2.7.7.53 // APA2_YEAST 5,5-P-1,P-4-TETRAPHOSPHATE PHOSPHORYLASE II (EC 2.7.7.53) (DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PHOSPHORYLASE) (AP-4-A PHOSPHORYLASE) (AP,A PHOSPHORYLASE) (ATP ADENYLYLTRANSFERASE).;6.66e-13 /// EC:3.6.1.29 // FHIT_HUMAN BIS(5-ADENOSYL)-TRIPHOSPHATASE (EC 3.6.1.29) (DIADENOSINE 5,5- P1,P3-TRIPHOSPHATE HYDROLASE) (DINUCLEOSIDETRIPHOSPHATASE) (AP3A HYDROLASE) (AP3AASE) (FRAGILE HISTIDINE TRIAD PROTEIN).;2.29e-34" 4885413 // histidine triad nucleotide binding protein 1; Histidine triad nucleotide-binding protein (protein kinase C inhibitor 1); histidine triad nucleotide-binding protein; protein kinase C inhibitor 1; histidine triad nucleotide binding protein [Homo sapiens];7e-70 /// 10439439 // unnamed protein product [Homo sapiens];2e-69 HINT_HUMAN // Gene:HINT Gene:PRKCNH1 Gene:PKCI1 Histidine triad nucleotide-binding protein (Protein kinase C inhibitor 1) (Protein kinase C-interacting protein 1) (PKCI-1). length=125;3e-64 /// HNT1_MOUSE // Gene:HINT1 Gene:HINT Gene:PRKCNH1 Gene:PKCI1 Gene:PKCI Histidine triad nucleotide-binding protein 1 (Adenosine 5'- monophosphoramidase) (Protein kinase C inhibitor 1) (Protein kinase C- interacting protein 1) (PKCI-1). length=125;2e-61 /// HNT1_BOVIN // Gene:HINT1 Gene:HINT Gene:PKCI1 Histidine triad nucleotide-binding protein 1 (Adenosine 5'- monophosphoramidase) (Protein kinase C inhibitor 1) (Protein kinase C- interacting protein 1) (PKCI-1) (17 kDa inhibitor of protein kinase C). length=125;2e-61 99581_at MG-U74Av2 // histidine triad nucleotide binding protein Curated Ortholog /// Msa.2988.0_s_at Mu11KsubB // histidine triad nucleotide binding protein Curated Ortholog /// U60001_at Mu11KsubA // histidine triad nucleotide binding protein Curated Ortholog /// 1424018_at MOE430A // histidine triad nucleotide binding protein Curated Ortholog /// 1424017_a_at MOE430A // histidine triad nucleotide binding protein Curated Ortholog /// Msa.14089.0_f_at Mu11KsubB // histidine triad nucleotide binding protein Curated Ortholog /// Msa.28144.0_f_at Mu11KsubB // histidine triad nucleotide binding protein Curated Ortholog chr5q23.3 // 130942410-130948147 // - // 100 Hs.256697 // 6 // NM_005340 // histidine triad nucleotide binding protein 1 // chr5 // 130942272-130948233 // - 200094_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AI004246 Consensus includes gb:AI004246 /FEA=EST /DB_XREF=gi:3213756 /DB_XREF=est:ou03g06.x1 /CLONE=IMAGE:1625242 /UG=Hs.75309 eukaryotic translation elongation factor 2 Hs.75309.1 Hs.75309.1 "1500074386 (3 transcripts, 1 gene cluster)" eukaryotic translation elongation factor 2 EEF2 Chr:19pter-q12 Hs.75309 1938 P13639 /// Q8TA90 --- 130610 ENSG00000167658 --- NM_001961 // eukaryotic translation elongation factor 2 --- --- 3746 // translation elongation factor // not recorded --- --- --- --- --- Translation_Factors --- "IPR005517 // Elongation factor G, domain IV /// IPR005225 // Small GTP-binding protein domain /// IPR004161 // Elongation factor Tu, domain 2 /// IPR000795 // Elongation factor, GTP-binding /// IPR000640 // Elongation factor G, C-terminal" "GTP_EFTU_D2 // Elongation factor Tu domain 2;6e-18 /// EFG_C // Elongation factor G C-terminus;2.6e-37 /// EFG_IV // Elongation factor G, domain IV;2.6e-50 /// GTP_EFTU // Elongation factor Tu GTP binding domain;1.4e-85" IPB000178 // Initiation factor 2;3.3e-08 "d1dar_2 // c.37.1.8 // Elongation factor G (EF-G), N-terminal (G) domain ;7.6e-70" --- --- 4503483 // eukaryotic translation elongation factor 2 [Homo sapiens];0.0 /// 600159 // elongation factor 2;0.0 --- "rc_AI178750_at RG-U34A // eukaryotic translation elongation factor 2 Curated Ortholog /// rc_AA892801_g_at RN-U34 // eukaryotic translation elongation factor 2 Curated Ortholog /// 1394595_at RAE230B // ESTs, Highly similar to STM1_MOUSE Stromal interaction molecule 1 precursor [M.musculus] Curated Ortholog /// rc_AA892801_g_at RG-U34A // eukaryotic translation elongation factor 2 Curated Ortholog /// rc_AA892801_at RG-U34A // eukaryotic translation elongation factor 2 Curated Ortholog /// 1370003_at RAE230A // eukaryotic translation elongation factor 2 Curated Ortholog /// Msa.41658.0_s_at Mu11KsubB // eukaryotic translation elongation factor 2 Curated Ortholog /// Msa.17890.0_f_at Mu11KsubB // eukaryotic translation elongation factor 2 Curated Ortholog /// Msa.40741.0_s_at Mu11KsubB // eukaryotic translation elongation factor 2 Curated Ortholog /// Msa.600.0_f_at Mu11KsubB // eukaryotic translation elongation factor 2 Curated Ortholog /// Msa.38636.0_s_at Mu11KsubB // eukaryotic translation elongation factor 2 Curated Ortholog /// Msa.23588.0_s_at Mu11KsubB // eukaryotic translation elongation factor 2 Curated Ortholog /// 1424736_at MOE430A // eukaryotic translation elongation factor 2 Curated Ortholog /// M76131_rc_at Mu11KsubA // eukaryotic translation elongation factor 2 Curated Ortholog /// Msa.16027.0_s_at Mu11KsubB // eukaryotic translation elongation factor 2 Curated Ortholog /// Msa.29963.0_f_at Mu11KsubB // eukaryotic translation elongation factor 2 Curated Ortholog /// Msa.11057.0_s_at Mu11KsubB // eukaryotic translation elongation factor 2 Curated Ortholog /// 134806_at MG-U74Cv2 // eukaryotic translation elongation factor 2 Curated Ortholog /// Msa.31964.0_f_at Mu11KsubB // eukaryotic translation elongation factor 2 Curated Ortholog /// 1440784_at MOE430B // eukaryotic translation elongation factor 2 Curated Ortholog /// 164982_at MG-U74Bv2 // eukaryotic translation elongation factor 2 Curated Ortholog /// Msa.17432.0_s_at Mu11KsubB // eukaryotic translation elongation factor 2 Curated Ortholog /// 97559_at MG-U74Av2 // eukaryotic translation elongation factor 2 Curated Ortholog /// Msa.17081.0_f_at Mu11KsubB // eukaryotic translation elongation factor 2 Curated Ortholog /// Msa.13232.0_s_at Mu11KsubB // eukaryotic translation elongation factor 2 Curated Ortholog" chr19p13.3 // 4045352-4046016 // - // 99 Hs.75309 // 2 // Z11692 // eukaryotic translation elongation factor 2 // chr19 // 4045331-4053608 // - 200095_x_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AA320764 Consensus includes gb:AA320764 /FEA=EST /DB_XREF=gi:1973113 /DB_XREF=est:EST23183 /UG=Hs.76230 ribosomal protein S10 Hs.76230.2 Hs.76230.2 "1500074387 (19 transcripts, 15 gene clusters)" "ESTs, Highly similar to S55918 ribosomal protein S10, cytosolic - human [H.sapiens]" --- --- Hs.434090 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- RS10_HUMAN // Gene:RPS10 40S ribosomal protein S10. length=165;3e-37 /// RS10_MOUSE // SW:Q9DCR5 Gene:RPS10 40S ribosomal protein S10. length=165;3e-36 /// RS10_MOUSE // SW:Q9DCR5 Gene:RPS10 40S ribosomal protein S10. length=165;9e-37 /// Q9DCR5 // Gene-TRE:2210402A09RIK 2210402A09RIK PROTEIN. length=120;3e-36 --- chr6p21.31 // 34381671-34388959 // - // 100 "Hs.381128 // 1 // AK025353 // Homo sapiens cDNA: FLJ21700 fis, clone COL09849, highly similar to HSU14972 Human ribosomal protein S10 mRNA, mRNA sequence // chr6 // 34381645-34390218 // - /// Hs.356491 // 1 // BC004334 // ribosomal protein S10 // chr6 // 34381645-34389415 // - /// Hs.406620 // 5 // NM_001014 // ribosomal protein S10 // chr6 // 34381645-34390267 // - /// Hs.356360 // 1 // BC007700 // ribosomal protein S2 // chr6 // 34381645-34389415 // -" 200096_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AI862255 "Consensus includes gb:AI862255 /FEA=EST /DB_XREF=gi:5526362 /DB_XREF=est:tb77d10.x1 /CLONE=IMAGE:2060371 /UG=Hs.24322 ATPase, H+ transporting, lysosomal (vacuolar proton pump) 9kD" Hs.24322.2.S1 Hs.24322.2 "1500074388 (2 transcripts, 1 gene cluster)" "ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e" ATP6V0E Chr:5q35.2 Hs.421241 8992 O15342 EC:3.6.3.14 603931 ENSG00000113732 --- "NM_003945 // ATPase, H+ transporting, lysosomal, V0 subunit e" 15992 // proton transport // predicted/computed 5624 // membrane fraction // experimental evidence /// 219 // vacuolar hydrogen-transporting ATPase // predicted/computed 5215 // transporter // not recorded /// 4002 // adenosinetriphosphatase // predicted/computed "Hydrolase // not recorded /// Active transporter, primary // not recorded" --- Integral membrane // predicted/computed --- Unspecified membrane // not recorded --- MAP00193 // ATP synthesis /// MAP02040 // Flagellar assembly /// MAP03070 // Type III secretion system --- --- --- --- numtm:2;Nin-prob:0.06396;type:signal;type:signal; --- "4502319 // ATPase, H+ transporting, lysosomal, V0 subunit e; ATPase, H+ transporting, lysosomal 9kD V0 subunit e; vacuolar ATP synthase subunit H; V-ATPase H subunit; vacuolar proton pump H subunit; V-ATPase M9.2 subunit; V-ATPase 9.2 kDa membrane accessory protein; H(+)-transporting two-sector ATPase, subunit H; vacuolar proton-ATPase subunit M9.2; ATPase, H+ transporting, lysosomal, 9kD; ATPase, H+ transporting, lysosomal (vacuolar proton pump) 9kD; ATPase, H+ transporting, lysosomal 9kD V0 subunit M9.2 [Homo sapi>;2e-45 /// 13507387 // lysosomal H+ transporting-ATPase subunit M9.2 [Canis familiaris];7e-45" --- "1367724_a_at RAE230A // 81.44% vacuolar proton-ATPase subunit M9.2 Putative Ortholog /// rc_AI013039_at RG-U34B // 81.44% vacuolar proton-ATPase subunit M9.2 Putative Ortholog /// 169769_r_at MG-U74Cv2 // ATPase, H+ transporting, V0 subunit Curated Ortholog /// AA590757_s_at Mu11KsubA // ATPase, H+ transporting, V0 subunit Curated Ortholog /// 1416328_a_at MOE430A // ATPase, H+ transporting, V0 subunit Curated Ortholog /// 94301_at MG-U74Av2 // ATPase, H+ transporting, V0 subunit Curated Ortholog" chr5q35.1 // 173123657-173163609 // + // 98 --- 200097_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AI701949 Consensus includes gb:AI701949 /FEA=EST /DB_XREF=gi:4989849 /DB_XREF=est:tq09c07.x1 /CLONE=IMAGE:2208300 /UG=Hs.129548 heterogeneous nuclear ribonucleoprotein K Hs.129548.1_RC Hs.129548.1 "1500074389 (2 transcripts, 1 gene cluster)" heterogeneous nuclear ribonucleoprotein K HNRPK Chr:9q21.32-q21.33 Hs.129548 3190 Q07244 --- --- ENSG00000165119 --- NM_002140 // heterogeneous nuclear ribonucleoprotein K isoform a /// NM_031262 // heterogeneous nuclear ribonucleoprotein K isoform b /// NM_031263 // heterogeneous nuclear ribonucleoprotein K isoform a 6396 // RNA processing // predicted/computed 5634 // nucleus // predicted/computed /// 5654 // nucleoplasm // experimental evidence 3676 // nucleic acid binding // extended:Unknown; KH; 3.1e-10 /// 3723 // RNA binding // experimental evidence /// 8436 // heterogeneous nuclear ribonucleoprotein // predicted/computed RNA-binding protein // experimental evidence RNA processing/modification // predicted/computed RNA-associated // experimental evidence --- Nuclear // experimental evidence --- --- "IPR004088 // KH domain, type 1 /// IPR004087 // KH domain" KH // KH domain;5.1e-42 IPB002999 // Tudor domain;0.0008 "d1khma_ // d.51.1.1 // HnRNP K, KH3 ;1.93e-35 /// d1khma_ // d.51.1.1 // HnRNP K, KH3 ;6.54e-34" --- --- 14165437 // heterogeneous nuclear ribonucleoprotein K isoform a; dC-stretch binding protein; transformation upregulated nuclear protein [Homo sapiens];0.0 /// 13384620 // heterogeneous nuclear ribonucleoprotein K [Mus musculus];0.0 /// 1083569 // kappa-B motif-binding phosphoprotein - mouse;0.0 /// 12230546 // Heterogeneous nuclear ribonucleoprotein K (hnRNP K);0.0 ROK_HUMAN // SW:Q15671 SW:Q96J62 Gene:HNRPK Gene:HNRNPK Heterogeneous nuclear ribonucleoprotein K (hnRNP K) (DC-stretch binding protein) (CSBP) (Transformation upregulated nuclear protein) (TUNP). length=463;0 1367895_at RAE230A // 89.09% heterogeneous nuclear ribonucleoprotein K Putative Ortholog /// 1399157_at RAE230A // 89.09% EST Putative Ortholog /// rc_AA963968_at RG-U34B // 89.09% heterogeneous nuclear ribonucleoprotein K Putative Ortholog /// 1398797_at RAE230A // 89.09% heterogeneous nuclear ribonucleoprotein K Putative Ortholog /// rc_AA965110_at RG-U34B // 89.09% heterogeneous nuclear ribonucleoprotein K Putative Ortholog /// rc_AA799582_at RG-U34A // 89.09% heterogeneous nuclear ribonucleoprotein K Putative Ortholog /// rc_AA849312_at RG-U34B // 89.09% EST Putative Ortholog /// AA684857_s_at RG-U34C // 89.09% heterogeneous nuclear ribonucleoprotein K Putative Ortholog /// D17711cds_s_at RG-U34A // 89.09% heterogeneous nuclear ribonucleoprotein K Putative Ortholog /// rc_AI237051_at RG-U34C // 89.09% heterogeneous nuclear ribonucleoprotein K Putative Ortholog /// Msa.26751.0_s_at Mu11KsubB // heterogeneous nuclear ribonucleoprotein K Curated Ortholog /// 1423684_at MOE430A // heterogeneous nuclear ribonucleoprotein K Curated Ortholog /// 1448176_a_at MOE430A // heterogeneous nuclear ribonucleoprotein K Curated Ortholog /// 1454692_x_at MOE430A // heterogeneous nuclear ribonucleoprotein K Curated Ortholog /// 1460547_a_at MOE430A // heterogeneous nuclear ribonucleoprotein K Curated Ortholog /// 94041_at MG-U74Av2 // heterogeneous nuclear ribonucleoprotein K Curated Ortholog /// Msa.4750.0_s_at Mu11KsubB // heterogeneous nuclear ribonucleoprotein K Curated Ortholog /// Msa.29035.0_s_at Mu11KsubB // heterogeneous nuclear ribonucleoprotein K Curated Ortholog /// aa388667_f_at Mu11KsubA // heterogeneous nuclear ribonucleoprotein K Curated Ortholog chr9q21.32 // 78436672-78437190 // - // 99 Hs.129548 // 2 // AK096385 // heterogeneous nuclear ribonucleoprotein K // chr9 // 78436649-78448571 // - 200098_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank T33068 Consensus includes gb:T33068 /FEA=EST /DB_XREF=gi:615166 /DB_XREF=est:EST56576 /UG=Hs.7101 anaphase-promoting complex subunit 5 Hs.7101.1 Hs.7101.1 "1500074390 (4 transcripts, 2 gene clusters)" anaphase promoting complex subunit 5 ANAPC5 Chr:12q24.31 Hs.7101 51433 Q8N4H7 /// Q9BQD4 /// Q9UJX4 /// Q9Y2B7 --- 606948 ENSG00000089053 --- NM_016237 // anaphase-promoting complex subunit 5 74 // regulation of cell cycle // predicted/computed /// 90 // mitotic anaphase // predicted/computed /// 86 // G2/M transition of mitotic cell cycle // predicted/computed /// 6511 // ubiquitin-dependent protein catabolism // predicted/computed 5680 // anaphase-promoting complex // experimental evidence 4842 // ubiquitin-protein ligase // predicted/computed Protein conjugation factor // not recorded Protein degradation // not recorded --- --- --- --- --- IPR001440 // TPR repeat --- --- --- --- --- 6180013 // anaphase-promoting complex subunit 5 [Homo sapiens];0.0 /// 20127553 // anaphase-promoting complex subunit 5; periodontal ligament fibroblast protein [Homo sapiens];0.0 Q9D190 // Gene-TRE:ANAPC5 Gene-TRE:2510006G12RIK 2510006G12RIK PROTEIN. length=139;2e-70 /// Q9CSL1 // Gene-TRE:ANAPC5 Gene-TRE:2510006G12RIK 2510006G12RIK PROTEIN (FRAGMENT). length=437;0 rc_AA817836_at RG-U34C // 96.35% ESTs Putative Ortholog /// 1383129_at RAE230B // 96.35% ESTs Putative Ortholog /// rc_AI072254_at RG-U34C // 96.35% ESTs Putative Ortholog /// 1435178_x_at MOE430A // anaphase-promoting complex subunit 5 Curated Ortholog /// 1456695_x_at MOE430A // anaphase-promoting complex subunit 5 Curated Ortholog /// 166947_at MG-U74Cv2 // anaphase-promoting complex subunit 5 Curated Ortholog /// 132437_s_at MG-U74Cv2 // anaphase-promoting complex subunit 5 Curated Ortholog /// 1416906_at MOE430A // anaphase-promoting complex subunit 5 Curated Ortholog /// 95100_at MG-U74Av2 // anaphase-promoting complex subunit 5 Curated Ortholog /// 1433822_x_at MOE430A // anaphase-promoting complex subunit 5 Curated Ortholog /// aa271012_g_at Mu11KsubA // anaphase-promoting complex subunit 5 Curated Ortholog /// aa271012_at Mu11KsubA // anaphase-promoting complex subunit 5 Curated Ortholog /// 1453307_a_at MOE430A // anaphase-promoting complex subunit 5 Curated Ortholog /// 1435177_a_at MOE430A // anaphase-promoting complex subunit 5 Curated Ortholog chr12q24.31 // 121326214-121327661 // - // 100 Hs.7101 // 8 // NM_016237 // anaphase promoting complex subunit 5 // chr12 // 121326204-121370265 // - 200099_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AL356115 "Consensus includes gb:AL356115 /DEF=Human DNA sequence from clone RP11-486O22 on chromosome 10 Contains the 3part of a gene for KIAA1128 protein, a novel pseudogene, a gene for protein similar to RPS3A (ribosomal protein S3A), ESTs, STSs, GSSs and CpG islands /FEA=CDS_1 /DB_XREF=gi:9795038 /UG=Hs.307132 Human DNA sequence from clone RP11-486O22 on chromosome 10 Contains the 3part of a gene for KIAA1128 protein, a novel pseudogene, a gene for protein similar to RPS3A (ribosomal protein S3A), ESTs, STSs, GSSs and CpG islands" Hs.307132.0.S1 Hs.307132.0 "1500074391 (5 transcripts, 2 gene clusters)" --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- "RS3B_YEAST // Gene:RPS1B Gene:RPS10B Gene:PLC2 Gene:YML063W 40S RIBOSOMAL PROTEIN S1-B (RP10B). length=254;1e-63 /// RS3A_HUMAN // SW:P33443 Gene:RPS3A 40S ribosomal protein S3a. length=263;1e-119 /// RS3A_DROME // SW:O44389 SW:Q9V4A9 Gene:RPS3A Gene:C3 Gene:M(4)101 Gene:CG2168 40S ribosomal protein S3a (C3 protein). length=267;3e-78 /// Q9V4A9 // Gene-TRE:RPS3A RPS3A PROTEIN. length=268;2e-78 /// Q9H1N5 // Gene-TRE:BA486O22.3 BA486O22.3 (SIMILAR TO RPS3A (RIBOSOMAL PROTEIN S3A)). length=255;1e-145 /// RS3A_RAT // SW:P33443 Gene:RPS3A Gene:FTE1 Gene:FTE-1 40S RIBOSOMAL PROTEIN S3A (V-FOS TRANSFORMATION EFFECTOR PROTEIN). length=263;1e-119 /// Q9CAV0 // Gene-TRE:T9J14.21 Gene-TRE:AT3G04840, T9J14.21 RIBOSOMAL PROTEIN S3A (PUTATIVE 40S RIBOSOMAL PROTEIN S3A) (S PHASE SPECIFIC). length=262;8e-73 /// RS3A_CAEEL // Gene:RPS-1 Gene:F56F3.5 40S ribosomal protein S3a. length=256;2e-73 /// Q9D1S3 // Gene-TRE:RPS3A RIBOSOMAL PROTEIN S3A. length=264;1e-119 /// Q9SS10 // Gene-TRE:T9J14.21 PUTATIVE 40S RIBOSOMAL PROTEIN S3A (S PHASE SPECIFIC). length=262;8e-73 /// RS3A_YEAST // Gene:RPS1A Gene:RPS10A Gene:PLC1 Gene:YLR441C Gene:L9753.9 40S RIBOSOMAL PROTEIN S1-A (RP10A). length=254;4e-63 /// RS3A_MOUSE // Gene:RPS3A 40S RIBOSOMAL PROTEIN S3A. length=263;1e-119" --- --- --- 200593_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank BC003621.1 "gb:BC003621.1 /DEF=Homo sapiens, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), clone MGC:1992, mRNA, complete cds. /FEA=mRNA /PROD=heterogeneous nuclear ribonucleoprotein U(scaffold attachment factor A) /DB_XREF=gi:13177672 /UG=Hs.103804 heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) /FL=gb:BC003367.1 gb:BC003621.1 gb:NM_004501.1" g13177672 Hs.103804.0 "1500074392 (2 transcripts, 1 gene cluster)" heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) HNRPU Chr:1q44 Hs.103804 3192 Q00839 /// Q8N174 /// Q96BA7 /// Q96HY9 /// Q9BQ09 /// Q9UEL2 --- --- ENSG00000153187 --- NM_004501 // heterogeneous nuclear ribonucleoprotein U isoform b /// NM_031844 // heterogeneous nuclear ribonucleoprotein U isoform a 6396 // RNA processing // predicted/computed 5654 // nucleoplasm // not recorded /// 5634 // nucleus // not recorded 3723 // RNA binding // experimental evidence /// 3677 // DNA binding // experimental evidence /// 8436 // heterogeneous nuclear ribonucleoprotein // predicted/computed DNA-binding protein // experimental evidence /// RNA-binding protein // experimental evidence RNA processing/modification // predicted/computed RNA-associated // experimental evidence /// DNA-associated (direct or indirect) // experimental evidence --- Nuclear // predicted/computed --- --- IPR003877 // SPla/RYanodine receptor SPRY /// IPR003034 // DNA-binding SAP SAP // SAP domain;8.5e-12 /// SPRY // SPRY domain;6.7e-33 IPB001580 // Calreticulin family;0.0028 /// IPB001580 // Calreticulin family;0.0029 --- --- --- 14141161 // heterogeneous nuclear ribonucleoprotein U isoform b; hnRNP U protein; scaffold attachment factor A; p120 nuclear protein [Homo sapiens];0.0 /// 284156 // heterogeneous ribonuclear particle protein U - human;0.0 /// 14141163 // heterogeneous nuclear ribonucleoprotein U isoform a; hnRNP U protein; scaffold attachment factor A; p120 nuclear protein [Homo sapiens];0.0 "Q96HY9 // SIMILAR TO HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U (SCAFFOLD ATTACHMENT FACTOR A) (FRAGMENT). length=708;0 /// Q9BQ09 // HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U (SCAFFOLD ATTACHMENT FACTOR A). length=806;0 /// Q9UEL2 // P120 (FRAGMENT). length=191;1e-104 /// Q63555 // SP120. length=798;0 /// O88568 // Gene-TRE:HNRPU Gene-TRE:HNRNP U HETEROGENOUS NUCLEAR RIBONUCLEOPROTEIN U. length=798;0 /// Q8VEK3 // SIMILAR TO TRANSPORTER PROTEIN, SYSTEM N1 NA+ AND H+-COUPLED GLUTAMINE TRANSPORTER. length=800;0 /// ROU_HUMAN // SW:O75507 Gene:HNRPU Gene:SAFA Gene:U21.1 Heterogenous nuclear ribonucleoprotein U (hnRNP U) (Scaffold attachment factor A) (SAF-A). length=824;0 /// Q96BA7 // HYPOTHETICAL 79.7 KDA PROTEIN. length=722;0 /// Q9R205 // Gene-TRE:HNRNP U HETEROGENOUS NUCLEAR RIBONUCLEOPROTEIN U (FRAGMENT). length=61;3e-31" D14048_g_at RG-U34A // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// 1370170_at RAE230A // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// D14048_at RG-U34A // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// rc_AI058964_at RG-U34B // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// 1370171_at RAE230A // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// D14048_g_at RN-U34 // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// H32350_s_at RG-U34C // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// 1450849_at MOE430A // heterogeneous nuclear ribonucleoprotein U Curated Ortholog /// 93761_at MG-U74Av2 // heterogeneous nuclear ribonucleoprotein U Curated Ortholog /// w15856_at Mu11KsubB // heterogeneous nuclear ribonucleoprotein U Curated Ortholog /// 1423051_at MOE430A // heterogeneous nuclear ribonucleoprotein U Curated Ortholog chr1q44 // 240282051-240283685 // - // 100 Hs.103804 // 10 // NM_004501 // heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) // chr1 // 240281252-240292120 // - /// Hs.103804 // 10 // NM_031844 // heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) // chr1 // 240281252-240292120 // - 200594_x_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004501.1 "gb:NM_004501.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) (HNRPU), mRNA. /FEA=mRNA /GEN=HNRPU /PROD=heterogeneous nuclear ribonucleoprotein U(scaffold attachment factor A) /DB_XREF=gi:4758545 /UG=Hs.103804 heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) /FL=gb:BC003367.1 gb:BC003621.1 gb:NM_004501.1" g4758545 Hs.103804.0 "1500074393 (14 transcripts, 12 gene clusters)" heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) HNRPU Chr:1q44 Hs.103804 3192 Q00839 /// Q8N174 /// Q96BA7 /// Q96HY9 /// Q9BQ09 /// Q9UEL2 --- --- ENSG00000153187 --- NM_004501 // heterogeneous nuclear ribonucleoprotein U isoform b /// NM_031844 // heterogeneous nuclear ribonucleoprotein U isoform a 6396 // RNA processing // predicted/computed 5654 // nucleoplasm // not recorded /// 5634 // nucleus // not recorded 3723 // RNA binding // experimental evidence /// 3677 // DNA binding // experimental evidence /// 8436 // heterogeneous nuclear ribonucleoprotein // predicted/computed DNA-binding protein // experimental evidence /// RNA-binding protein // experimental evidence RNA processing/modification // predicted/computed RNA-associated // experimental evidence /// DNA-associated (direct or indirect) // experimental evidence --- Nuclear // predicted/computed --- --- IPR003877 // SPla/RYanodine receptor SPRY /// IPR003034 // DNA-binding SAP SAP // SAP domain;8.5e-12 /// SPRY // SPRY domain;6.7e-33 IPB001580 // Calreticulin family;0.0028 /// IPB001580 // Calreticulin family;0.0029 --- --- --- 14141161 // heterogeneous nuclear ribonucleoprotein U isoform b; hnRNP U protein; scaffold attachment factor A; p120 nuclear protein [Homo sapiens];0.0 /// 284156 // heterogeneous ribonuclear particle protein U - human;0.0 /// 14141163 // heterogeneous nuclear ribonucleoprotein U isoform a; hnRNP U protein; scaffold attachment factor A; p120 nuclear protein [Homo sapiens];0.0 "Q96HY9 // SIMILAR TO HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U (SCAFFOLD ATTACHMENT FACTOR A) (FRAGMENT). length=708;0 /// Q9BQ09 // HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U (SCAFFOLD ATTACHMENT FACTOR A). length=806;0 /// Q9UEL2 // P120 (FRAGMENT). length=191;1e-104 /// Q63555 // SP120. length=798;0 /// O88568 // Gene-TRE:HNRPU Gene-TRE:HNRNP U HETEROGENOUS NUCLEAR RIBONUCLEOPROTEIN U. length=798;0 /// Q8VEK3 // SIMILAR TO TRANSPORTER PROTEIN, SYSTEM N1 NA+ AND H+-COUPLED GLUTAMINE TRANSPORTER. length=800;0 /// ROU_HUMAN // SW:O75507 Gene:HNRPU Gene:SAFA Gene:U21.1 Heterogenous nuclear ribonucleoprotein U (hnRNP U) (Scaffold attachment factor A) (SAF-A). length=824;0 /// Q96BA7 // HYPOTHETICAL 79.7 KDA PROTEIN. length=722;0 /// Q9R205 // Gene-TRE:HNRNP U HETEROGENOUS NUCLEAR RIBONUCLEOPROTEIN U (FRAGMENT). length=61;3e-31" D14048_g_at RG-U34A // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// 1370170_at RAE230A // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// D14048_at RG-U34A // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// rc_AI058964_at RG-U34B // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// 1370171_at RAE230A // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// D14048_g_at RN-U34 // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// H32350_s_at RG-U34C // 86.56% transporter protein; system N1 Na+ and H+-coupled glutamine transporter Putative Ortholog /// 1450849_at MOE430A // heterogeneous nuclear ribonucleoprotein U Curated Ortholog /// 93761_at MG-U74Av2 // heterogeneous nuclear ribonucleoprotein U Curated Ortholog /// w15856_at Mu11KsubB // heterogeneous nuclear ribonucleoprotein U Curated Ortholog /// 1423051_at MOE430A // heterogeneous nuclear ribonucleoprotein U Curated Ortholog chr1q44 // 240281313-240281847 // - // 100 Hs.103804 // 8 // NM_004501 // heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) // chr1 // 240281252-240292120 // - /// Hs.103804 // 8 // NM_031844 // heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) // chr1 // 240281252-240292120 // - 200595_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_003750.1 "gb:NM_003750.1 /DEF=Homo sapiens eukaryotic translation initiation factor 3, subunit 10 (theta, 150170kD) (EIF3S10), mRNA. /FEA=mRNA /GEN=EIF3S10 /PROD=eukaryotic translation initiation factor 3,subunit 10 (theta, 150170kD) /DB_XREF=gi:4503508 /UG=Hs.198899 eukaryotic translation initiation factor 3, subunit 10 (theta, 150170kD) /FL=gb:D50929.1 gb:U58046.1 gb:U78311.1 gb:NM_003750.1" g4503508 Hs.198899.0 "1500074394 (2 transcripts, 1 gene cluster)" "eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa" EIF3S10 Chr:10q26 Hs.154796 8661 Q14152 --- --- ENSG00000107581 --- "NM_003750 // eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa" 6446 // regulation of translational initiation // predicted/computed 5852 // eukaryotic translation initiation factor 3 complex // predicted/computed "8135 // translation factor, nucleic acid binding // predicted/computed" --- Protein synthesis // predicted/computed Protein synthesis factor // predicted/computed --- Cytoplasmic // predicted/computed Translation_Factors --- "IPR000717 // Domain in components of the proteasome, COP9-complex and eIF3 (PCI) /// IPR002017 // Spectrin repeat" PCI // PCI domain;8.2e-14 IPB000967 // Zinc finger NF-X1 type;0.0063 --- --- --- "4503509 // eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa; eukaryotic translation initiation factor 3, subunit 10 (theta, 170kD); Eukaryotic translation initiation factor 3, subunit 10, 170kD; eukaryotic translation initiation factor 3, subunit 10 (theta, 150/170kD) [Homo sapiens];0.0 /// 6686292 // Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin);0.0" IF3A_HUMAN // SW:O00653 Gene:EIF3S10 Gene:KIAA0139 Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a). length=1382;0 /// Q9CSE5 // Gene-TRE:EIF3 EUKARYOTIC TRANSLATION INITIATION FACTOR 3 (FRAGMENT). length=294;1e-158 /// Q15778 // P167 (FRAGMENT). length=466;0 /// IF3A_MOUSE // SW:Q60697 SW:Q62162 Gene:EIF3S10 Gene:EIF3 Gene:CSMA Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin). length=1344;0 1416659_at MOE430A // eukaryotic translation initiation factor 3 Curated Ortholog /// 1416660_at MOE430A // eukaryotic translation initiation factor 3 Curated Ortholog /// u14172_s_at Mu11KsubA // eukaryotic translation initiation factor 3 Curated Ortholog /// 94250_at MG-U74Av2 // eukaryotic translation initiation factor 3 Curated Ortholog /// 1416661_at MOE430A // eukaryotic translation initiation factor 3 Curated Ortholog /// 1448425_at MOE430A // eukaryotic translation initiation factor 3 Curated Ortholog chr10q26.11 // 120038287-120038837 // - // 100 /// chr2p13.3 // 70709255-70709806 // - // 99 "Hs.154796 // 5 // NM_003750 // eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa // chr10 // 120038241-120083986 // -" 200596_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank BE614908 "Consensus includes gb:BE614908 /FEA=EST /DB_XREF=gi:9896507 /DB_XREF=est:601280348F1 /CLONE=IMAGE:3622499 /UG=Hs.198899 eukaryotic translation initiation factor 3, subunit 10 (theta, 150170kD) /FL=gb:D50929.1 gb:U58046.1 gb:U78311.1 gb:NM_003750.1" Hs.198899.0.S1 Hs.198899.0 "1500074395 (1 transcript, 1 gene cluster)" "eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa" EIF3S10 Chr:10q26 Hs.154796 8661 Q14152 --- 602039 ENSG00000107581 --- "NM_003750 // eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa" 6446 // regulation of translational initiation // predicted/computed 5852 // eukaryotic translation initiation factor 3 complex // predicted/computed "8135 // translation factor, nucleic acid binding // predicted/computed" --- Protein synthesis // predicted/computed Protein synthesis factor // predicted/computed --- Cytoplasmic // predicted/computed Translation_Factors --- "IPR000717 // Domain in components of the proteasome, COP9-complex and eIF3 (PCI) /// IPR002017 // Spectrin repeat" PCI // PCI domain;8.2e-14 IPB000967 // Zinc finger NF-X1 type;0.0063 --- --- --- "4503509 // eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa; eukaryotic translation initiation factor 3, subunit 10 (theta, 170kD); Eukaryotic translation initiation factor 3, subunit 10, 170kD; eukaryotic translation initiation factor 3, subunit 10 (theta, 150/170kD) [Homo sapiens];0.0 /// 6686292 // Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin);0.0" IF3A_HUMAN // SW:O00653 Gene:EIF3S10 Gene:KIAA0139 Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a). length=1382;0 /// Q9CSE5 // Gene-TRE:EIF3 EUKARYOTIC TRANSLATION INITIATION FACTOR 3 (FRAGMENT). length=294;1e-158 /// Q15778 // P167 (FRAGMENT). length=466;0 /// IF3A_MOUSE // SW:Q60697 SW:Q62162 Gene:EIF3S10 Gene:EIF3 Gene:CSMA Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin). length=1344;0 1416659_at MOE430A // eukaryotic translation initiation factor 3 Curated Ortholog /// 1416660_at MOE430A // eukaryotic translation initiation factor 3 Curated Ortholog /// u14172_s_at Mu11KsubA // eukaryotic translation initiation factor 3 Curated Ortholog /// 94250_at MG-U74Av2 // eukaryotic translation initiation factor 3 Curated Ortholog /// 1416661_at MOE430A // eukaryotic translation initiation factor 3 Curated Ortholog /// 1448425_at MOE430A // eukaryotic translation initiation factor 3 Curated Ortholog chr10q26.11 // 120039234-120040423 // - // 100 "Hs.154796 // 5 // NM_003750 // eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa // chr10 // 120038241-120083986 // -" 200597_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank BE614908 "Consensus includes gb:AI123320 /FEA=EST /DB_XREF=gi:3539086 /DB_XREF=est:qa48a10.x1 /CLONE=IMAGE:1689978 /UG=Hs.198899 eukaryotic translation initiation factor 3, subunit 10 (theta, 150170kD) /FL=gb:D50929.1 gb:U58046.1 gb:U78311.1 gb:NM_003750.1" Hs.198899.0.S1 Hs.198899.0 --- "Homo sapiens partial mRNA; ID LG43-4A2, LG141-7B1, mRNA sequence" --- --- Hs.433495 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- IF3A_HUMAN // SW:O00653 Gene:EIF3S10 Gene:KIAA0139 Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a). length=1382;0 /// Q9CSE5 // Gene-TRE:EIF3 EUKARYOTIC TRANSLATION INITIATION FACTOR 3 (FRAGMENT). length=294;1e-158 /// Q15778 // P167 (FRAGMENT). length=466;0 /// IF3A_MOUSE // SW:Q60697 SW:Q62162 Gene:EIF3S10 Gene:EIF3 Gene:CSMA Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin). length=1344;0 --- chr10q26.11 // 120036928-120037417 // - // 100 --- 200598_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AI582238 Consensus includes gb:AI582238 /FEA=EST /DB_XREF=gi:4568135 /DB_XREF=est:tq65c10.x1 /CLONE=IMAGE:2213682 /UG=Hs.82689 tumor rejection antigen (gp96) 1 /FL=gb:NM_003299.1 Hs.82689.0.S1 Hs.82689.0 "1500074396 (1 transcript, 1 gene cluster)" tumor rejection antigen (gp96) 1 TRA1 Chr:12q24.2-q24.3 Hs.82689 7184 P14625 /// Q96GW1 --- 191175 ENSG00000166598 --- NM_003299 // tumor rejection antigen (gp96) 1 6950 // response to stress // predicted/computed 5886 // plasma membrane // experimental evidence 5488 // binding // experimental evidence /// 5524 // ATP binding // extended:inferred from electronic annotation; HATPase_c; 5.4e-13 /// 3773 // heat shock protein // predicted/computed /// 5211 // plasma glycoprotein // experimental evidence Small molecule-binding protein // experimental evidence Cell stress // predicted/computed --- --- --- --- --- "IPR001404 // Heat shock protein Hsp90 /// IPR000886 // Endoplasmic reticulum targeting sequence /// IPR003594 // ATP-binding protein, ATPase-like" "HATPase_c // Histidine kinase-, DNA gyrase B-, and HSP90;5.4e-13 /// HSP90 // Hsp90 protein;0" PR00344 // Bacterial sensor protein C-terminal signature;0.0083 d1amw__ // d.122.1.1 // HSP90 ;3.74e-75 --- --- 729425 // Endoplasmin precursor (94 kDa glucose-regulated protein) (GRP94);0.0 /// 4507677 // tumor rejection antigen (gp96) 1; Tumor rejection antigen-1 (gp96) [Homo sapiens];0.0 "Q96GW1 // SIMILAR TO TUMOR REJECTION ANTIGEN (GP96) 1. length=315;1e-173 /// Q96A97 // HEAT SHOCK PROTEIN GP96 (FRAGMENT). length=782;0 /// O03985 // Gene-TRE:HSP81.2 HEAT SHOCK PROTEIN. length=699;0 /// HS82_ARATH // Gene:HSP81-2 Gene:AT5G56030 Gene:MDA7.7 Heat shock protein 81-2 (HSP81-2). length=699;0 /// Q8VYT8 // Gene-TRE:AT5G56010 PUTATIVE HEAT SHOCK PROTEIN 90. length=699;0 /// O03986 // Gene-TRE:HSP81.4 HEAT SHOCK PROTEIN. length=699;0 /// ENPL_MOUSE // SW:P11427 Gene:TRA1 Gene:TRA-1 Endoplasmin precursor (Endoplasmic reticulum protein 99) (94 kDa glucose-regulated protein) (GRP94) (ERP99) (Polymorphic tumor rejection antigen 1) (Tumor rejection antigen gp96). length=802;0 /// ENPL_HUMAN // SW:Q96A97 Gene:TRA1 Endoplasmin precursor (94 kDa glucose-regulated protein) (GRP94) (gp96 homolog) (Tumor rejection antigen 1). length=803;0 /// Q91V38 // UNKNOWN (PROTEIN FOR MGC:12053) (TUMOR REJECTION ANTIGEN GP96). length=802;0 /// Q22235 // Gene-TRE:T05E11.3 T05E11.3 PROTEIN. length=760;0 /// Q94A60 // AT5G56010/MDA7_5 (FRAGMENT). length=527;1e-156 /// HS83_ARATH // SW:Q9FKU5 SW:Q8VYT8 SW:Q94A60 Gene:HSP81-3 Gene:HSP81.2 Gene:AT5G56010 Gene:MDA7.5 Heat shock protein 81-3 (HSP81-3) (HSP81.2). length=699;0 /// Q9CW12 // Gene-TRE:TRA1 TUMOR REJECTION ANTIGEN GP96 (FRAGMENT). length=141;5e-66 /// HS81_ARATH // SW:Q03930 SW:Q9LTF3 SW:Q96268 Gene:HSP81-1 Gene:HSP83 Gene:AT5G52640 Gene:F6N7.13 Heat shock protein 81-1 (HSP81-1) (Heat shock protein 83). length=700;0 /// Q9FKU5 // Gene-TRE:AT5G56010, MDA7.5 HEAT SHOCK PROTEIN 90. length=699;0 /// Q8VZJ6 // Gene-TRE:AT5G56030 PUTATIVE HEAT SHOCK PROTEIN 81-2 (HSP81-2) (FRAGMENT). length=527;1e-156" Msa.27657.0_f_at Mu11KsubB // tumor rejection antigen gp96 Curated Ortholog /// 1438040_a_at MOE430A // tumor rejection antigen gp96 Curated Ortholog /// Msa.12687.0_s_at Mu11KsubB // tumor rejection antigen gp96 Curated Ortholog /// 1415889_a_at MOE430A // tumor rejection antigen gp96 Curated Ortholog /// 160499_at MG-U74Av2 // tumor rejection antigen gp96 Curated Ortholog chr12q23.3 // 104208559-104212319 // + // 100 Hs.82689 // 5 // NM_003299 // tumor rejection antigen (gp96) 1 // chr12 // 104205004-104222517 // + 200599_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_003299.1 "gb:NM_003299.1 /DEF=Homo sapiens tumor rejection antigen (gp96) 1 (TRA1), mRNA. /FEA=mRNA /GEN=TRA1 /PROD=tumor rejection antigen (gp96) 1 /DB_XREF=gi:4507676 /UG=Hs.82689 tumor rejection antigen (gp96) 1 /FL=gb:NM_003299.1" g4507676 Hs.82689.0 "1500074397 (1 transcript, 1 gene cluster)" tumor rejection antigen (gp96) 1 TRA1 Chr:12q24.2-q24.3 Hs.82689 7184 P14625 /// Q96GW1 --- --- ENSG00000166598 --- NM_003299 // tumor rejection antigen (gp96) 1 6950 // response to stress // predicted/computed 5886 // plasma membrane // experimental evidence 5488 // binding // experimental evidence /// 5524 // ATP binding // extended:inferred from electronic annotation; HATPase_c; 5.4e-13 /// 5211 // plasma glycoprotein // experimental evidence /// 3773 // heat shock protein // predicted/computed Small molecule-binding protein // experimental evidence Cell stress // predicted/computed --- --- --- --- --- "IPR001404 // Heat shock protein Hsp90 /// IPR000886 // Endoplasmic reticulum targeting sequence /// IPR003594 // ATP-binding protein, ATPase-like" "HATPase_c // Histidine kinase-, DNA gyrase B-, and HSP90;5.4e-13 /// HSP90 // Hsp90 protein;0" PR00344 // Bacterial sensor protein C-terminal signature;0.0083 d1amw__ // d.122.1.1 // HSP90 ;3.74e-75 --- --- 729425 // Endoplasmin precursor (94 kDa glucose-regulated protein) (GRP94);0.0 /// 4507677 // tumor rejection antigen (gp96) 1; Tumor rejection antigen-1 (gp96) [Homo sapiens];0.0 "Q96GW1 // SIMILAR TO TUMOR REJECTION ANTIGEN (GP96) 1. length=315;1e-173 /// Q96A97 // HEAT SHOCK PROTEIN GP96 (FRAGMENT). length=782;0 /// O03985 // Gene-TRE:HSP81.2 HEAT SHOCK PROTEIN. length=699;0 /// HS82_ARATH // Gene:HSP81-2 Gene:AT5G56030 Gene:MDA7.7 Heat shock protein 81-2 (HSP81-2). length=699;0 /// Q8VYT8 // Gene-TRE:AT5G56010 PUTATIVE HEAT SHOCK PROTEIN 90. length=699;0 /// O03986 // Gene-TRE:HSP81.4 HEAT SHOCK PROTEIN. length=699;0 /// ENPL_MOUSE // SW:P11427 Gene:TRA1 Gene:TRA-1 Endoplasmin precursor (Endoplasmic reticulum protein 99) (94 kDa glucose-regulated protein) (GRP94) (ERP99) (Polymorphic tumor rejection antigen 1) (Tumor rejection antigen gp96). length=802;0 /// ENPL_HUMAN // SW:Q96A97 Gene:TRA1 Endoplasmin precursor (94 kDa glucose-regulated protein) (GRP94) (gp96 homolog) (Tumor rejection antigen 1). length=803;0 /// Q91V38 // UNKNOWN (PROTEIN FOR MGC:12053) (TUMOR REJECTION ANTIGEN GP96). length=802;0 /// Q22235 // Gene-TRE:T05E11.3 T05E11.3 PROTEIN. length=760;0 /// Q94A60 // AT5G56010/MDA7_5 (FRAGMENT). length=527;1e-156 /// HS83_ARATH // SW:Q9FKU5 SW:Q8VYT8 SW:Q94A60 Gene:HSP81-3 Gene:HSP81.2 Gene:AT5G56010 Gene:MDA7.5 Heat shock protein 81-3 (HSP81-3) (HSP81.2). length=699;0 /// Q9CW12 // Gene-TRE:TRA1 TUMOR REJECTION ANTIGEN GP96 (FRAGMENT). length=141;5e-66 /// HS81_ARATH // SW:Q03930 SW:Q9LTF3 SW:Q96268 Gene:HSP81-1 Gene:HSP83 Gene:AT5G52640 Gene:F6N7.13 Heat shock protein 81-1 (HSP81-1) (Heat shock protein 83). length=700;0 /// Q9FKU5 // Gene-TRE:AT5G56010, MDA7.5 HEAT SHOCK PROTEIN 90. length=699;0 /// Q8VZJ6 // Gene-TRE:AT5G56030 PUTATIVE HEAT SHOCK PROTEIN 81-2 (HSP81-2) (FRAGMENT). length=527;1e-156" Msa.27657.0_f_at Mu11KsubB // tumor rejection antigen gp96 Curated Ortholog /// 1438040_a_at MOE430A // tumor rejection antigen gp96 Curated Ortholog /// Msa.12687.0_s_at Mu11KsubB // tumor rejection antigen gp96 Curated Ortholog /// 1415889_a_at MOE430A // tumor rejection antigen gp96 Curated Ortholog /// 160499_at MG-U74Av2 // tumor rejection antigen gp96 Curated Ortholog --- --- 200600_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_002444.1 "gb:NM_002444.1 /DEF=Homo sapiens moesin (MSN), mRNA. /FEA=mRNA /GEN=MSN /PROD=moesin /DB_XREF=gi:4505256 /UG=Hs.170328 moesin /FL=gb:M69066.1 gb:NM_002444.1" g4505256 Hs.170328.0 --- moesin MSN Chr:Xq11.2-q12 Hs.170328 4478 P26038 --- --- ENSG00000147065 --- NM_002444 // moesin 6928 // cell motility // not recorded 5856 // cytoskeleton // predicted/computed /// 5886 // plasma membrane // predicted/computed 5200 // structural constituent of cytoskeleton // predicted/computed --- Cell structure // predicted/computed --- Cell migration/motility // not recorded --- --- --- IPR000798 // Ezrin/radixin/moesin ERM /// IPR000299 // Band 4.1 domain ERM // Ezrin/radixin/moesin family;9.2e-233 /// Band_41 // FERM domain (Band 4.1 family);2.5e-136 "IPB003753 // Exonuclease VII, large subunit;0.0043" d1ef1a1 // a.11.2.1 // Moesin ;1.29e-43 /// d1ef1a3 // d.15.1.4 // Moesin ;5.41e-29 /// d1ef1c_ // a.137.5.1 // Moesin tail domain ;2.78e-27 /// d1ef1a2 // b.55.1.5 // Moesin ;6.48e-37 --- --- 4505257 // moesin [Homo sapiens];0.0 /// 462608 // Moesin (Membrane-organizing extension spike protein);0.0 "Q9UJZ2 // Gene-TRE:VIL2 CYTOVILLIN 2 (FRAGMENT). length=152;4e-71 /// MOES_HUMAN // Gene:MSN Moesin (Membrane-organizing extension spike protein). length=576;0 /// RADI_HUMAN // Gene:RDX RADIXIN. length=583;0 /// Q9UJZ6 // EZRIN (FRAGMENT). length=159;2e-72 /// MOEH_DROME // SW:Q24435 SW:P91930 SW:Q9W3B4 Gene:MOE Gene:CG10701 MOESIN/EZRIN/RADIXIN HOMOLOG (D17 PROTEIN). length=578;0 /// Q24053 // Gene-TRE:MOE Gene-TRE:EMR1 Gene-TRE:CG10701 CYTOSKELETAL PROTEIN (FRAGMENT). length=89;1e-39 /// Q9UJZ7 // EZRIN (FRAGMENT). length=158;8e-73 /// MOES_MOUSE // Gene:MSN MOESIN (MEMBRANE-ORGANIZING EXTENSION SPIKE PROTEIN). length=576;0 /// Q9DCI1 // Gene-TRE:VIL2 ADULT MALE KIDNEY CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:0610037B22, FULL INSERT SEQUENCE. length=586;0 /// Q96CU8 // SIMILAR TO VILLIN 2 (EZRIN). length=586;0 /// O35763 // MOESIN. length=577;0 /// RADI_MOUSE // Gene:RDX RADIXIN. length=583;0 /// EZRI_HUMAN // SW:P23714 SW:Q9NSJ4 Gene:VIL2 Ezrin (p81) (Cytovillin) (Villin 2). length=585;0 /// Q9UK20 // EZRIN (FRAGMENT). length=161;6e-77 /// P91015 // Gene-TRE:C01G8.5A CODED FOR BY C. ELEGANS CDNA YK167F5.5. length=563;1e-175 /// EZRI_MOUSE // Gene:VIL2 EZRIN (P81) (CYTOVILLIN) (VILLIN 2). length=585;0 /// Q8VHK3 // EZRIN (FRAGMENT). length=455;0 /// Q9UJZ8 // EZRIN (FRAGMENT). length=156;3e-74" AF004811_at RG-U34A // 85.78% moesin Putative Ortholog /// 1368948_at RAE230A // 85.78% moesin Putative Ortholog /// rc_AI010104_at RG-U34B // 85.78% moesin Putative Ortholog /// 1371575_at RAE230A // 85.78% moesin Putative Ortholog /// 1421814_at MOE430A // moesin Curated Ortholog /// M86390_rc_g_at Mu11KsubA // moesin Curated Ortholog /// Msa.978.0_at Mu11KsubB // moesin Curated Ortholog /// c78546_rc_s_at Mu11KsubA // moesin Curated Ortholog /// 1450379_at MOE430A // moesin Curated Ortholog /// 160308_at MG-U74Av2 // moesin Curated Ortholog /// M86390_rc_at Mu11KsubA // moesin Curated Ortholog chrXq12 // 62426537-62427079 // + // 99 Hs.170328 // 3 // NM_002444 // moesin // chrX // 62352937-62427115 // + 200601_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank U48734.1 "gb:U48734.1 /DEF=Human non-muscle alpha-actinin mRNA, complete cds. /FEA=mRNA /PROD=alpha actinin /DB_XREF=gi:3157975 /UG=Hs.182485 actinin, alpha 4 /FL=gb:NM_004924.2 gb:BC005033.1 gb:D89980.1 gb:U48734.1" g3157975 Hs.182485.0 --- "actinin, alpha 4" ACTN4 Chr:19q13 Hs.182485 81 O43707 /// Q96BG6 --- --- ENSG00000130402 --- "NM_004924 // actinin, alpha 4" 6928 // cell motility // predicted/computed /// 7125 // invasive growth // predicted/computed 5737 // cytoplasm // experimental evidence /// 15629 // actin cytoskeleton // predicted/computed /// 5634 // nucleus // experimental evidence 3781 // actin bundling // not recorded /// 5200 // structural constituent of cytoskeleton // predicted/computed --- Cell structure // not recorded Actin-cytoskeleton associated // not recorded --- Cytoplasmic // experimental evidence /// Nuclear // experimental evidence /// Cytoskeletal // not recorded --- --- "IPR002048 // Calcium-binding EF-hand /// IPR001715 // Calponin-like actin-binding /// IPR002017 // Spectrin repeat /// IPR001589 // Actin-binding, actinin-type" spectrin // Spectrin repeat;1.2e-77 /// CH // Calponin homology (CH) domain;1.9e-66 /// efhand // EF hand;5.6e-10 IPB002017 // Spectrin repeat;2.3e-22 d1bkra_ // a.40.1.1 // beta-spectrin ;4.91e-39 /// d1h8ba_ // a.39.1.7 // alpha-Actinin ;4.94e-31 /// d1quua1 // a.7.1.1 // alpha-actinin ;4.76e-36 --- --- "12025678 // actinin, alpha 4 [Homo sapiens];0.0 /// 11230802 // actinin alpha 4; alpha actinin 4 [Mus musculus];0.0" AAC4_MOUSE // Gene:ACTN4 ALPHA-ACTININ 4 (NON-MUSCLE ALPHA-ACTININ 4) (F-ACTIN CROSS LINKING PROTEIN). length=912;0 /// Q99MI8 // ALPHA ACTININ 4 (FRAGMENT). length=545;0 /// AAC4_HUMAN // SW:O76048 Gene:ACTN4 ALPHA-ACTININ 4 (NON-MUSCLE ALPHA-ACTININ 4) (F-ACTIN CROSS LINKING PROTEIN). length=911;0 /// Q9CTH3 // Gene-TRE:1110008F24RIK 1110008F24RIK PROTEIN (FRAGMENT). length=225;8e-85 /// Q96BG6 // HYPOTHETICAL 73.9 KDA PROTEIN (FRAGMENT). length=637;0 /// Q61063 // Gene-TRE:FR-17 ALPHA-ACTININ (FRAGMENT). length=72;7e-30 /// Q9XVU8 // Gene-TRE:W04D2.1B W04D2.1B PROTEIN. length=894;0 /// Q99LJ3 // HYPOTHETICAL 45.9 KDA PROTEIN (FRAGMENT). length=400;1e-169 /// Q23158 // Gene-TRE:W04D2.1 W04D2.1 PROTEIN. length=920;0 /// O76048 // ALPHA ACTININ. length=912;0 /// AAC4_RAT // Gene:ACTN4 ALPHA-ACTININ 4 (NON-MUSCLE ALPHA-ACTININ 4) (F-ACTIN CROSS LINKING PROTEIN). length=911;0 /// O73760 // Gene-TRE:ACTNL ACTININ-LIKE PROTEIN (FRAGMENT). length=53;8e-18 "1369942_at RAE230A // 90.88% actinin alpha 4 Putative Ortholog /// rc_AA800126_at RG-U34A // 90.88% ESTs, Highly similar to I55595 splicing factor - human [H.sapiens] Putative Ortholog /// rc_AI011763_at RG-U34B // 90.88% actinin alpha 4 Putative Ortholog /// rc_AA894016_g_at RG-U34A // 90.88% ESTs, Highly similar to I55595 splicing factor - human [H.sapiens] Putative Ortholog /// rc_AA964877_at RG-U34B // 90.88% ESTs, Highly similar to I55595 splicing factor - human [H.sapiens] Putative Ortholog /// rc_AA944358_at RG-U34B // 90.88% actinin alpha 4 Putative Ortholog /// 1379737_a_at RAE230A // 90.88% ESTs, Highly similar to I55595 splicing factor - human [H.sapiens] Putative Ortholog /// 1381967_at RAE230A // 90.88% ESTs, Highly similar to I55595 splicing factor - human [H.sapiens] Putative Ortholog /// U19893_at RG-U34A // 90.88% actinin alpha 4 Putative Ortholog /// rc_AA894016_at RG-U34A // 90.88% ESTs, Highly similar to I55595 splicing factor - human [H.sapiens] Putative Ortholog /// Msa.19501.0_s_at Mu11KsubB // actinin alpha 4 Curated Ortholog /// 1423449_a_at MOE430A // actinin alpha 4 Curated Ortholog /// Msa.6492.0_s_at Mu11KsubB // actinin alpha 4 Curated Ortholog /// 96343_at MG-U74Av2 // actinin alpha 4 Curated Ortholog /// w64452_s_at Mu11KsubB // actinin alpha 4 Curated Ortholog /// Msa.4999.0_f_at Mu11KsubB // actinin alpha 4 Curated Ortholog /// Msa.27917.0_f_at Mu11KsubB // actinin alpha 4 Curated Ortholog /// Msa.22263.0_s_at Mu11KsubB // actinin alpha 4 Curated Ortholog" chr19q13.2 // 39611453-39611875 // + // 99 "Hs.182485 // 3 // BC005033 // actinin, alpha 4 // chr19 // 39529595-39612034 // +" 200602_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_000484.1 "gb:NM_000484.1 /DEF=Homo sapiens amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease) (APP), mRNA. /FEA=mRNA /GEN=APP /PROD=amyloid beta (A4) precursor protein (proteasenexin-II, Alzheimer disease) /DB_XREF=gi:4502166 /UG=Hs.177486 amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease) /FL=gb:NM_000484.1" g4502166 Hs.177486.0 --- "amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease)" APP Chr:21q21.3 Hs.177486 351 P05067 /// Q16014 /// Q16019 /// Q16020 /// Q8WZ99 --- --- ENSG00000142192 --- "NM_000484 // amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease)" 8219 // cell death // experimental evidence /// 6878 // copper homeostasis // predicted/computed /// 7165 // signal transduction // predicted/computed /// 6915 // apoptosis // experimental evidence 5783 // endoplasmic reticulum // experimental evidence /// 5576 // extracellular // experimental evidence /// 16020 // membrane // extended:Unknown; A4_EXTRA; 1.8e-130 /// 5794 // Golgi apparatus // experimental evidence /// 5887 // integral to plasma membrane // experimental evidence 4867 // serine protease inhibitor // experimental evidence Inhibitor or repressor // experimental evidence Cell stress // predicted/computed Soluble // experimental evidence /// Integral membrane // experimental evidence Cell death/Apoptosis // experimental evidence /// CNS-specific functions // not recorded Golgi // experimental evidence --- --- IPR001255 // Beta-amyloid peptide (beta-APP) /// IPR001868 // Amyloidogenic glycoprotein (Amyloid A4) /// IPR002223 // Pancreatic trypsin inhibitor (Kunitz) A4_EXTRA // Amyloid A4 extracellular domain;1.8e-130 /// Beta-APP // Beta-amyloid peptide (beta-APP);3.4e-26 /// Kunitz_BPTI // Kunitz/Bovine pancreatic trypsin inhibito;2.9e-24 IPB000135 // High mobility group proteins HMG1 and HMG2;4.1e-06 d1shp__ // g.8.1.1 // Trypsin inhibitor ;6e-10 /// d1mwpa_ // d.170.2.1 // N-terminal domain of the amyloid precursor protein ;4.84e-47 numtm:1;Nin-prob:0.00015;type:tm; --- "4502167 // amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease); Amyloid beta (A4) precursor protein; amyloid beta-peptide [Homo sapiens];0.0 /// 5921142 // amyloid precursor protein [Sus scrofa];0.0" "A4_MOUSE // Gene:APP Alzheimer's disease amyloid A4 protein homolog precursor (Amyloidogenic glycoprotein) (AG). length=770;0 /// Q8UUI7 // Gene-TRE:APPB PUTATIVE MEMBRANE PROTEIN (FRAGMENT). length=239;2e-81 /// Q9BT38 // SIMILAR TO AMYLOID BETA (A4) PRECURSOR PROTEIN (PROTEASE NEXIN-II, ALZHEIMER DISEASE). length=305;1e-173 /// A4_HUMAN // SW:P09000 SW:Q16011 Gene:APP Gene:A4 Gene:CVAP Gene:AD1 Alzheimer's disease amyloid A4 protein precursor (Protease nexin-II) (PN-II) (APPI) [Contains: Beta-amyloid protein (Beta-APP) (A-beta)]. length=770;0 /// Q9I9E7 // AMYLOID PROTEIN (FRAGMENT). length=612;0 /// Q13778 // AMYLOID PROTEIN (AD-AP) (FRAGMENT). length=97;5e-49 /// Q99K32 // HYPOTHETICAL 68.4 KDA PROTEIN (FRAGMENT). length=607;0 /// P97487 // TRE:P97942 Gene-TRE:APP HIPPOCAMPAL AMYLOID PROTEIN. length=695;0 /// Q16014 // BETA-AMYLOID PEPTIDE (FRAGMENT). length=82;7e-37 /// P78438 // Gene-TRE:APP AMYLOID PROTEIN (BETA-AMYLOID PROTEIN) (FRAGMENT). length=82;1e-39 /// Q9UC33 // BETA-AMYLOID PEPTIDE (FRAGMENT). length=33;3e-12 /// A4_RAT // Gene:APP Alzheimer's disease amyloid A4 protein homolog precursor (Amyloidogenic glycoprotein) (AG). length=770;0 /// Q8WZ99 // Gene-TRE:APP AMYLOID PROTEIN (FRAGMENT). length=35;1e-11 /// Q8UUI8 // Gene-TRE:APPA PUTATIVE MEBRANE PROTEIN (FRAGMENT). length=357;1e-148 /// Q16019 // Gene-TRE:BETA APP BETA-AMYLOID PEPTIDE (FRAGMENT). length=82;2e-37 /// Q16020 // Gene-TRE:BETA APP BETA-AMYLOID PEPTIDE (FRAGMENT). length=82;1e-36 /// Q9UQ58 // Gene-TRE:APP BETA-AMYLOID PROTEIN (FRAGMENT). length=75;2e-38 /// A4_MACMU // Gene:APP ALZHEIMER'S DISEASE AMYLOID A4 PROTEIN (FRAGMENT). length=76;9e-41" "rc_AA859931_g_at RG-U34A // 88.89% ESTs, Highly similar to hypothetical protein MGC2749 [Homo sapiens] [H.sapiens] Putative Ortholog /// 1389156_at RAE230A // 88.89% ESTs, Highly similar to hypothetical protein MGC2749 [Homo sapiens] [H.sapiens] Putative Ortholog /// rc_AA859931_at RG-U34A // 88.89% ESTs, Highly similar to hypothetical protein MGC2749 [Homo sapiens] [H.sapiens] Putative Ortholog /// rc_AA851372_at RG-U34B // 88.89% ESTs, Highly similar to hypothetical protein MGC2749 [Homo sapiens] [H.sapiens] Putative Ortholog /// Msa.27849.0_s_at Mu11KsubB // amyloid beta (A4) precursor protein Curated Ortholog /// 1420621_a_at MOE430A // amyloid beta (A4) precursor protein Curated Ortholog /// 1454953_at MOE430A // amyloid beta (A4) precursor protein Curated Ortholog /// 93063_at MG-U74Av2 // amyloid beta (A4) precursor protein Curated Ortholog /// 1427442_a_at MOE430A // amyloid beta (A4) precursor protein Curated Ortholog /// Msa.27234.0_s_at Mu11KsubB // amyloid beta (A4) precursor protein Curated Ortholog /// 115254_at MG-U74Bv2 // amyloid beta (A4) precursor protein Curated Ortholog /// 1438374_x_at MOE430A // amyloid beta (A4) precursor protein Curated Ortholog /// 1438373_at MOE430A // amyloid beta (A4) precursor protein Curated Ortholog /// 1434427_a_at MOE430A // amyloid beta (A4) precursor protein Curated Ortholog /// 168158_r_at MG-U74Cv2 // amyloid beta (A4) precursor protein Curated Ortholog /// x59379_s_at Mu11KsubB // amyloid beta (A4) precursor protein Curated Ortholog /// 141129_at MG-U74Cv2 // amyloid beta (A4) precursor protein Curated Ortholog /// 107290_at MG-U74Bv2 // amyloid beta (A4) precursor protein Curated Ortholog" chr21q21.3 // 23914803-23915110 // - // 93 "Hs.177486 // 2 // NM_000484 // amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease) // chr21 // 23914753-24204977 // -" 200603_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AL050038.1 "Consensus includes gb:AL050038.1 /DEF=Homo sapiens mRNA; cDNA DKFZp566J0124 (from clone DKFZp566J0124). /FEA=mRNA /DB_XREF=gi:4884279 /UG=Hs.183037 protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) /FL=gb:M18468.1 gb:M33336.1 gb:NM_002734.1" Hs.183037.0.A3 Hs.183037.0 --- "protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)" PRKAR1A Chr:17q23-q24 Hs.183037 5573 AAH36285 /// P10644 --- --- ENSG00000108946 --- "NM_002734 // protein kinase, cAMP-dependent, regulatory, type I, alpha" 7242 // intracellular signaling cascade // experimental evidence /// 6357 // regulation of transcription from Pol II promoter // experimental evidence --- "8603 // cAMP-dependent protein kinase, regulator // predicted/computed" Regulatory subunit // predicted/computed Pol II transcription // experimental evidence --- --- --- --- --- "IPR003117 // cAMP-dependent protein kinase regulator, type II PKA R subunit /// IPR002373 // cAMP-dependent protein kinase /// IPR000595 // Cyclic nucleotide-binding domain" cNMP_binding // Cyclic nucleotide-binding domain;1.7e-64 /// RIIa // Regulatory subunit of type II PKA R-subu;1.3e-15 "IPB001808 // Bacterial regulatory proteins, Crp family;0.0032" d1rgs_1 // b.82.3.2 // Regulatory subunit of Protein kinase A ;9.64e-36 --- --- "4506063 // protein kinase, cAMP-dependent, regulatory, type I, alpha; tissue-specific extinguisher 1 [Homo sapiens];0.0 /// 6981396 // protein kinase, cAMP dependent, regulatory, type 1 [Rattus norvegicus];0.0" "Q96P62 // Gene-TRE:PRKAR1A PROTEIN KINASE A TYPE 1A REGULATORY SUBUNIT (FRAGMENT). length=59;3e-26 /// KAP1_MOUSE // Gene:PRKAR1B CAMP-DEPENDENT PROTEIN KINASE TYPE I-BETA REGULATORY CHAIN. length=380;1e-179 /// Q9CS50 // Gene-TRE:PRKAR1A Gene-TRE:1300018C22RIK 1300018C22RIK PROTEIN (FRAGMENT). length=303;1e-168 /// Q9JHR5 // Gene-TRE:PRKAR1A CAMP-DEPENDENT PROTEIN KINASE REGULATORY SUBUNIT RIALPHA (EC 2.7.1.37) (FRAGMENT). length=124;6e-65 /// Q9DBC7 // Gene-TRE:PRKAR1A Gene-TRE:1300018C22RIK 1300018C22RIK PROTEIN (PROTEIN KINASE, CAMP DEPENDENT REGULATORY, TYPE 1, ALPHA) (RIKEN CDNA 1300018C22 GENE). length=381;0 /// Q921L9 // SIMILAR TO PROTEIN KINASE, CAMP DEPENDENT REGULATORY, TYPE I BETA. length=381;1e-179 /// KAP0_RAT // Gene:PRKAR1A CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY CHAIN. length=380;0 /// KAP0_HUMAN // Gene:PRKAR1A Gene:PRKAR1 Gene:PKR1 CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY CHAIN (TISSUE- SPECIFIC EXTINGUISHER-1) (TSE1). length=381;0 /// KAP1_RAT // Gene:PRKAR1B CAMP-DEPENDENT PROTEIN KINASE TYPE I-BETA REGULATORY CHAIN. length=380;1e-179 /// Q9JHR6 // Gene-TRE:PRKAR1A CAMP-DEPENDENT PROTEIN KINASE REGULATORY SUBUNIT RIALPHA (EC 2.7.1.37) (FRAGMENT). length=59;1e-23" "U75932_at RG-U34A // Protein kinase, cAMP dependent, regulatory, type 1 Curated Ortholog /// 1386905_at RAE230A // Protein kinase, cAMP dependent, regulatory, type 1 Curated Ortholog /// Msa.10867.0_f_at Mu11KsubB // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// 96852_at MG-U74Av2 // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// aa163449_s_at Mu11KsubA // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// 1447635_at MOE430B // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// 1452032_at MOE430A // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// Msa.31166.0_s_at Mu11KsubB // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// 1425550_a_at MOE430A // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog" chr17q24.2 // 69488685-69489108 // + // 100 "Hs.355779 // 1 // AY007115 // Homo sapiens clone TCCCTA00211 mRNA sequence // chr17 // 69488350-69489834 // + /// Hs.183037 // 2 // BC036285 // protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) // chr17 // 69468815-69489165 // +" 200604_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank M18468.1 "gb:M18468.1 /DEF=Human cAMP-dependent protein kinase regulatory subunit type I (PRKAR1A) mRNA, complete cds. /FEA=mRNA /GEN=PRKAR1A /PROD=cAMP-dependent protein kinase regulatory subunittype 1 /DB_XREF=gi:1526988 /UG=Hs.183037 protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) /FL=gb:M18468.1 gb:M33336.1 gb:NM_002734.1" g1526988 Hs.183037.0 "1500074398 (1 transcript, 1 gene cluster)" "protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)" PRKAR1A Chr:17q23-q24 Hs.183037 5573 AAH36285 /// P10644 --- --- ENSG00000108946 --- "NM_002734 // protein kinase, cAMP-dependent, regulatory, type I, alpha" 7242 // intracellular signaling cascade // experimental evidence /// 6357 // regulation of transcription from Pol II promoter // experimental evidence --- "8603 // cAMP-dependent protein kinase, regulator // predicted/computed" Regulatory subunit // predicted/computed Pol II transcription // experimental evidence --- --- --- --- --- "IPR003117 // cAMP-dependent protein kinase regulator, type II PKA R subunit /// IPR002373 // cAMP-dependent protein kinase /// IPR000595 // Cyclic nucleotide-binding domain" cNMP_binding // Cyclic nucleotide-binding domain;1.7e-64 /// RIIa // Regulatory subunit of type II PKA R-subu;1.3e-15 "IPB001808 // Bacterial regulatory proteins, Crp family;0.0032" d1rgs_1 // b.82.3.2 // Regulatory subunit of Protein kinase A ;9.64e-36 --- --- "4506063 // protein kinase, cAMP-dependent, regulatory, type I, alpha; tissue-specific extinguisher 1 [Homo sapiens];0.0 /// 6981396 // protein kinase, cAMP dependent, regulatory, type 1 [Rattus norvegicus];0.0" "KAP1_MOUSE // Gene:PRKAR1B CAMP-DEPENDENT PROTEIN KINASE TYPE I-BETA REGULATORY CHAIN. length=380;1e-180 /// Q9CS50 // Gene-TRE:PRKAR1A Gene-TRE:1300018C22RIK 1300018C22RIK PROTEIN (FRAGMENT). length=303;1e-169 /// Q96P62 // Gene-TRE:PRKAR1A PROTEIN KINASE A TYPE 1A REGULATORY SUBUNIT (FRAGMENT). length=59;9e-27 /// Q9DBC7 // Gene-TRE:PRKAR1A Gene-TRE:1300018C22RIK 1300018C22RIK PROTEIN (PROTEIN KINASE, CAMP DEPENDENT REGULATORY, TYPE 1, ALPHA) (RIKEN CDNA 1300018C22 GENE). length=381;0 /// Q9JHR6 // Gene-TRE:PRKAR1A CAMP-DEPENDENT PROTEIN KINASE REGULATORY SUBUNIT RIALPHA (EC 2.7.1.37) (FRAGMENT). length=59;4e-24 /// Q921L9 // SIMILAR TO PROTEIN KINASE, CAMP DEPENDENT REGULATORY, TYPE I BETA. length=381;1e-180 /// KAP0_RAT // Gene:PRKAR1A CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY CHAIN. length=380;0 /// KAP0_HUMAN // Gene:PRKAR1A Gene:PRKAR1 Gene:PKR1 CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY CHAIN (TISSUE- SPECIFIC EXTINGUISHER-1) (TSE1). length=381;0 /// Q9JHR5 // Gene-TRE:PRKAR1A CAMP-DEPENDENT PROTEIN KINASE REGULATORY SUBUNIT RIALPHA (EC 2.7.1.37) (FRAGMENT). length=124;2e-65 /// KAP1_RAT // Gene:PRKAR1B CAMP-DEPENDENT PROTEIN KINASE TYPE I-BETA REGULATORY CHAIN. length=380;1e-180" "U75932_at RG-U34A // Protein kinase, cAMP dependent, regulatory, type 1 Curated Ortholog /// 1386905_at RAE230A // Protein kinase, cAMP dependent, regulatory, type 1 Curated Ortholog /// Msa.10867.0_f_at Mu11KsubB // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// 96852_at MG-U74Av2 // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// aa163449_s_at Mu11KsubA // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// 1447635_at MOE430B // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// 1452032_at MOE430A // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// Msa.31166.0_s_at Mu11KsubB // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// 1425550_a_at MOE430A // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog" chr17q24.2 // 69485284-69487019 // + // 100 "Hs.183037 // 5 // NM_002734 // protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) // chr17 // 69468856-69488660 // +" 200605_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_002734.1 "gb:NM_002734.1 /DEF=Homo sapiens protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) (PRKAR1A), mRNA. /FEA=mRNA /GEN=PRKAR1A /PROD=protein kinase, cAMP-dependent, regulatory, typeI, alpha /DB_XREF=gi:4506062 /UG=Hs.183037 protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) /FL=gb:M18468.1 gb:M33336.1 gb:NM_002734.1" g4506062 Hs.183037.0 "1500074399 (1 transcript, 1 gene cluster)" "protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)" PRKAR1A Chr:17q23-q24 Hs.183037 5573 AAH36285 /// P10644 --- --- ENSG00000108946 --- "NM_002734 // protein kinase, cAMP-dependent, regulatory, type I, alpha" 7242 // intracellular signaling cascade // experimental evidence /// 6357 // regulation of transcription from Pol II promoter // experimental evidence --- "8603 // cAMP-dependent protein kinase, regulator // predicted/computed" Regulatory subunit // predicted/computed Pol II transcription // experimental evidence --- --- --- --- --- "IPR003117 // cAMP-dependent protein kinase regulator, type II PKA R subunit /// IPR002373 // cAMP-dependent protein kinase /// IPR000595 // Cyclic nucleotide-binding domain" cNMP_binding // Cyclic nucleotide-binding domain;1.7e-64 /// RIIa // Regulatory subunit of type II PKA R-subu;1.3e-15 "IPB001808 // Bacterial regulatory proteins, Crp family;0.0032" d1rgs_1 // b.82.3.2 // Regulatory subunit of Protein kinase A ;9.64e-36 --- --- "4506063 // protein kinase, cAMP-dependent, regulatory, type I, alpha; tissue-specific extinguisher 1 [Homo sapiens];0.0 /// 6981396 // protein kinase, cAMP dependent, regulatory, type 1 [Rattus norvegicus];0.0" "Q96P62 // Gene-TRE:PRKAR1A PROTEIN KINASE A TYPE 1A REGULATORY SUBUNIT (FRAGMENT). length=59;2e-26 /// KAP1_MOUSE // Gene:PRKAR1B CAMP-DEPENDENT PROTEIN KINASE TYPE I-BETA REGULATORY CHAIN. length=380;1e-179 /// Q9JHR6 // Gene-TRE:PRKAR1A CAMP-DEPENDENT PROTEIN KINASE REGULATORY SUBUNIT RIALPHA (EC 2.7.1.37) (FRAGMENT). length=59;9e-24 /// Q9CS50 // Gene-TRE:PRKAR1A Gene-TRE:1300018C22RIK 1300018C22RIK PROTEIN (FRAGMENT). length=303;1e-168 /// Q9DBC7 // Gene-TRE:PRKAR1A Gene-TRE:1300018C22RIK 1300018C22RIK PROTEIN (PROTEIN KINASE, CAMP DEPENDENT REGULATORY, TYPE 1, ALPHA) (RIKEN CDNA 1300018C22 GENE). length=381;0 /// Q9JHR5 // Gene-TRE:PRKAR1A CAMP-DEPENDENT PROTEIN KINASE REGULATORY SUBUNIT RIALPHA (EC 2.7.1.37) (FRAGMENT). length=124;5e-65 /// Q921L9 // SIMILAR TO PROTEIN KINASE, CAMP DEPENDENT REGULATORY, TYPE I BETA. length=381;1e-179 /// KAP0_RAT // Gene:PRKAR1A CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY CHAIN. length=380;0 /// KAP0_HUMAN // Gene:PRKAR1A Gene:PRKAR1 Gene:PKR1 CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY CHAIN (TISSUE- SPECIFIC EXTINGUISHER-1) (TSE1). length=381;0 /// KAP1_RAT // Gene:PRKAR1B CAMP-DEPENDENT PROTEIN KINASE TYPE I-BETA REGULATORY CHAIN. length=380;1e-180" "U75932_at RG-U34A // Protein kinase, cAMP dependent, regulatory, type 1 Curated Ortholog /// 1386905_at RAE230A // Protein kinase, cAMP dependent, regulatory, type 1 Curated Ortholog /// Msa.10867.0_f_at Mu11KsubB // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// 96852_at MG-U74Av2 // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// aa163449_s_at Mu11KsubA // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// 1447635_at MOE430B // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// 1452032_at MOE430A // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// Msa.31166.0_s_at Mu11KsubB // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog /// 1425550_a_at MOE430A // protein kinase, cAMP dependent regulatory, type I, alpha Curated Ortholog" chr17q24.2 // 69488140-69488595 // + // 91 "Hs.183037 // 3 // NM_002734 // protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) // chr17 // 69468856-69488660 // +" 200606_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004415.1 "gb:NM_004415.1 /DEF=Homo sapiens desmoplakin (DPI, DPII) (DSP), mRNA. /FEA=mRNA /GEN=DSP /PROD=desmoplakin (DPI, DPII) /DB_XREF=gi:4758199 /UG=Hs.74316 desmoplakin (DPI, DPII) /FL=gb:M77830.3 gb:NM_004415.1" g4758199 Hs.74316.0 --- "desmoplakin (DPI, DPII)" DSP Chr:6p24 Hs.349499 1832 P15924 --- --- ENSG00000096696 --- "NM_004415 // desmoplakin (DPI, DPII)" 7148 // cell shape and cell size control // predicted/computed /// 8544 // epidermal differentiation // predicted/computed 5882 // intermediate filament // not recorded /// 5913 // cell-cell adherens junction // not recorded 5200 // structural constituent of cytoskeleton // experimental evidence --- Cell structure // not recorded Intermediate-filament associated // not recorded --- Cytoskeletal // not recorded --- --- IPR001101 // Plectin repeat /// IPR002017 // Spectrin repeat Plectin // Plectin repeat;2.6e-154 IPB001218 // Coronavirus nucleocapsid protein;0.0089 --- --- P450:Q27480 // CYP29A1 Cyt P450: Animalia.CYP29A1.Cel;5e-20 "3702136 // dJ512B11.1 (Desmoplakin I (DPI)) [Homo sapiens];0.0 /// 4758200 // desmoplakin (DPI, DPII); Desmoplakin [Homo sapiens];0.0" Q14189 // Gene-TRE:DPI DESMOPLAKIN I. length=2871;0 /// Q9CV95 // Gene-TRE:2300002E22RIK 2300002E22RIK PROTEIN (FRAGMENT). length=444;0 /// DESP_HUMAN // SW:Q14189 SW:O75993 SW:Q9UHN4 Gene:DSP Desmoplakin (DP) (250/210 kDa paraneoplastic pemphigus antigen). length=2871;0 /// O75993 // Gene-TRE:DJ512B11.1 DJ512B11.1 (DESMOPLAKIN I (DPI)). length=2871;0 --- chr6p24.3 // 7571259-7571711 // + // 100 "Hs.433471 // 1 // AF139065 // Desmoplakin I [Homo sapiens], mRNA sequence // chr6 // 7571053-7571806 // + /// Hs.349499 // 2 // NM_004415 // desmoplakin (DPI, DPII) // chr6 // 7526868-7571803 // +" 200607_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank BG289967 Consensus includes gb:BG289967 /FEA=EST /DB_XREF=gi:13046289 /DB_XREF=est:602381386F1 /CLONE=IMAGE:4499085 /UG=Hs.81848 RAD21 (S. pombe) homolog /FL=gb:D38551.1 gb:NM_006265.1 Hs.81848.0 Hs.81848.0 "1500074400 (1 transcript, 1 gene cluster)" RAD21 homolog (S. pombe) RAD21 Chr:8q24 Hs.81848 5885 O60216 --- 606462 ENSG00000164754 --- NM_006265 // RAD21 homolog 6310 // DNA recombination // predicted/computed /// 6302 // double-strand break repair // predicted/computed /// 7131 // meiotic recombination // predicted/computed --- --- --- DNA repair // predicted/computed --- --- --- --- --- IPR003768 // Protein of unknown function DUF173 --- IPB003768 // DUF173;0.00056 --- --- --- 5453994 // RAD21 homolog; protein involved in DNA double-strand break repair; nuclear matrix protein 1 [Homo sapiens];0.0 /// 1620398 // HR21spA [Homo sapiens];0.0 Q9H4I0 // Gene-TRE:DJ545L17.2 DJ545L17.2 (NOVEL PROTEIN SIMILAR TO RAD21 (S. POMBE) HOMOLOG (KIAA0078)) (FRAGMENT). length=158;8e-62 /// Q9BYW7 // Gene-TRE:DJ545L17.2 DJ545L17.8 (NOVEL PROTEIN SIMILAR TO RAD21 (S. POMBE) HOMOLOG (KIAA0078)) (FRAGMENT). length=54;5e-15 /// Q9DBU4 // Gene-TRE:RAD21 RAD21 HOMOLOG (S. POMBE). length=635;0 /// RA21_MOUSE // SW:P70219 SW:Q91VB9 SW:Q9DBU4 Gene:RAD21 Gene:HR21 Double-strand-break repair protein rad21 homolog (Pokeweed agglutinin- binding protein 29) (PW29). length=635;0 /// Q91VB9 // Gene-TRE:RAD21 RAD21. length=635;0 /// RA21_HUMAN // SW:Q99568 SW:Q15001 Gene:RAD21 Gene:HR21 Gene:NXP1 Gene:KIAA0078 Double-strand-break repair protein rad21 homolog (hHR21) (Nuclear matrix protein 1) (NXP-1). length=631;0 "1387805_at RAE230A // 86.85% BCL2/adenovirus E1B 19 kDa-interacting protein 3, nuclear gene for mitochondrial product Putative Ortholog /// rc_AI013887_at RG-U34B // 86.85% BCL2/adenovirus E1B 19 kDa-interacting protein 3, nuclear gene for mitochondrial product Putative Ortholog /// 1455938_x_at MOE430A // RAD21 homolog (S. pombe) Curated Ortholog /// 94768_at MG-U74Av2 // RAD21 homolog (S. pombe) Curated Ortholog /// 1416162_at MOE430A // RAD21 homolog (S. pombe) Curated Ortholog /// d37790_s_at Mu11KsubA // RAD21 homolog (S. pombe) Curated Ortholog" chr8q24.11 // 117924135-117927814 // - // 100 Hs.81848 // 4 // NM_006265 // RAD21 homolog (S. pombe) // chr8 // 117919347-117948175 // - 200608_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_006265.1 "gb:NM_006265.1 /DEF=Homo sapiens RAD21 (S. pombe) homolog (RAD21), mRNA. /FEA=mRNA /GEN=RAD21 /PROD=RAD21 (S. pombe) homolog /DB_XREF=gi:5453993 /UG=Hs.81848 RAD21 (S. pombe) homolog /FL=gb:D38551.1 gb:NM_006265.1" g5453993 Hs.81848.0 "1500074401 (1 transcript, 1 gene cluster)" RAD21 homolog (S. pombe) RAD21 Chr:8q24 Hs.81848 5885 O60216 --- --- ENSG00000164754 --- NM_006265 // RAD21 homolog 6310 // DNA recombination // predicted/computed /// 6302 // double-strand break repair // predicted/computed /// 7131 // meiotic recombination // predicted/computed --- --- --- DNA repair // predicted/computed --- --- --- --- --- IPR003768 // Protein of unknown function DUF173 --- IPB003768 // DUF173;0.00056 --- --- --- 5453994 // RAD21 homolog; protein involved in DNA double-strand break repair; nuclear matrix protein 1 [Homo sapiens];0.0 /// 1620398 // HR21spA [Homo sapiens];0.0 Q9H4I0 // Gene-TRE:DJ545L17.2 DJ545L17.2 (NOVEL PROTEIN SIMILAR TO RAD21 (S. POMBE) HOMOLOG (KIAA0078)) (FRAGMENT). length=158;8e-62 /// Q9DBU4 // Gene-TRE:RAD21 RAD21 HOMOLOG (S. POMBE). length=635;0 /// RA21_MOUSE // SW:P70219 SW:Q91VB9 SW:Q9DBU4 Gene:RAD21 Gene:HR21 Double-strand-break repair protein rad21 homolog (Pokeweed agglutinin- binding protein 29) (PW29). length=635;0 /// Q9BYW7 // Gene-TRE:DJ545L17.2 DJ545L17.8 (NOVEL PROTEIN SIMILAR TO RAD21 (S. POMBE) HOMOLOG (KIAA0078)) (FRAGMENT). length=54;4e-15 /// Q91VB9 // Gene-TRE:RAD21 RAD21. length=635;0 /// RA21_HUMAN // SW:Q99568 SW:Q15001 Gene:RAD21 Gene:HR21 Gene:NXP1 Gene:KIAA0078 Double-strand-break repair protein rad21 homolog (hHR21) (Nuclear matrix protein 1) (NXP-1). length=631;0 "1387805_at RAE230A // 86.85% BCL2/adenovirus E1B 19 kDa-interacting protein 3, nuclear gene for mitochondrial product Putative Ortholog /// rc_AI013887_at RG-U34B // 86.85% BCL2/adenovirus E1B 19 kDa-interacting protein 3, nuclear gene for mitochondrial product Putative Ortholog /// 1455938_x_at MOE430A // RAD21 homolog (S. pombe) Curated Ortholog /// 94768_at MG-U74Av2 // RAD21 homolog (S. pombe) Curated Ortholog /// 1416162_at MOE430A // RAD21 homolog (S. pombe) Curated Ortholog /// d37790_s_at Mu11KsubA // RAD21 homolog (S. pombe) Curated Ortholog" chr8q24.11 // 117919407-117919924 // - // 99 Hs.81848 // 4 // NM_006265 // RAD21 homolog (S. pombe) // chr8 // 117919347-117948175 // - 200609_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_017491.1 "gb:NM_017491.1 /DEF=Homo sapiens WD repeat domain 1 (WDR1), transcript variant 1, mRNA. /FEA=mRNA /GEN=WDR1 /PROD=WD repeat-containing protein 1, isoform 1 /DB_XREF=gi:9257256 /UG=Hs.85100 WD repeat domain 1 /FL=gb:BC000201.1 gb:BC002489.1 gb:AF020056.1 gb:AB010427.2 gb:NM_017491.1" g9257256 Hs.85100.1 "1500074402 (2 transcripts, 1 gene cluster)" WD repeat domain 1 WDR1 Chr:4p16.1 Hs.85100 9948 O75083 /// Q8N6E5 /// Q9UG05 --- --- ENSG00000071127 --- NM_005112 // WD repeat-containing protein 1 isoform 2 /// NM_017491 // WD repeat-containing protein 1 isoform 1 7605 // hearing // predicted/computed --- 5515 // protein binding // predicted/computed --- --- --- --- --- --- --- IPR001680 // G-protein beta WD-40 repeat "WD40 // WD domain, G-beta repeat;1.5e-54 /// WD40 // WD domain, G-beta repeat;1.1e-66" PR00319 // Beta G-protein (transducin) signature;0.00053 d1k8kc_ // b.69.4.1 // Arp2/3 complex 41 kDa subunit ARPC1 ;2.77e-80 --- --- 9257257 // WD repeat-containing protein 1 isoform 1 [Homo sapiens];0.0 /// 4827056 // WD repeat-containing protein 1 isoform 2 [Homo sapiens];0.0 /// 12652891 // WD repeat domain 1 [Homo sapiens];0.0 Q9UQE0 // WDR1 PROTEIN. length=534;0 /// WDR1_HUMAN // SW:O75313 SW:Q9UQE0 SW:Q9UG78 Gene:WDR1 WD-repeat protein 1 (Actin interacting protein 1) (AIP1) (NORI-1). length=606;0 /// Q9DBM8 // Gene-TRE:WDR1 WD REPEAT DOMAIN 1. length=606;0 /// Q9UG78 // Gene-TRE:DKFZP586I2219 HYPOTHETICAL 59.8 KDA PROTEIN (FRAGMENT). length=549;0 /// Q9UG05 // Gene-TRE:DKFZP586P1922 HYPOTHETICAL 25.3 KDA PROTEIN (FRAGMENT). length=234;1e-134 /// Q9DC08 // Gene-TRE:WDR1 WD REPEAT DOMAIN 1. length=606;0 /// WDR1_MOUSE // Gene:WDR1 WD-repeat protein 1 (Actin interacting protein 1) (AIP1). length=606;0 w71236_s_at Mu11KsubB // WD repeat domain 1 Curated Ortholog /// 168436_at MG-U74Cv2 // WD repeat domain 1 Curated Ortholog /// 1423054_at MOE430A // WD repeat domain 1 Curated Ortholog /// 96075_at MG-U74Av2 // WD repeat domain 1 Curated Ortholog /// W91568_rc_s_at Mu11KsubB // WD repeat domain 1 Curated Ortholog /// 1437591_a_at MOE430A // WD repeat domain 1 Curated Ortholog /// 1450851_at MOE430A // WD repeat domain 1 Curated Ortholog chr4p16.1 // 10026621-10027055 // - // 100 Hs.85100 // 8 // NM_005112 // WD repeat domain 1 // chr4 // 10026349-10068871 // - /// Hs.85100 // 8 // NM_017491 // WD repeat domain 1 // chr4 // 10026349-10068871 // - 200610_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_005381.1 "gb:NM_005381.1 /DEF=Homo sapiens nucleolin (NCL), mRNA. /FEA=mRNA /GEN=NCL /PROD=nucleolin /DB_XREF=gi:4885510 /UG=Hs.79110 nucleolin /FL=gb:NM_005381.1" g4885510 Hs.79110.0 "1500074403 (3 transcripts, 1 gene cluster)" nucleolin NCL Chr:2q12-qter Hs.79110 4691 Q8NB06 /// Q9BQ02 --- --- ENSG00000115053 --- NM_005381 // nucleolin --- 5730 // nucleolus // predicted/computed 3723 // RNA binding // predicted/computed /// 3676 // nucleic acid binding // extended:Unknown; rrm; 0.0001 RNA-binding protein // predicted/computed RNA processing/modification // not recorded RNA-associated // not recorded --- Nuclear // not recorded /// Nuclear nucleolus // not recorded --- --- IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;2.1e-59" IPB001990 // Granins (chromogranin or secretogranin);0.0062 d1fj7a_ // d.58.7.1 // Nucleolin ;3.07e-24 --- --- 4885511 // nucleolin [Homo sapiens];0.0 /// 13644124 // similar to Nucleolin (Protein C23) [Homo sapiens];0.0 "Q9QZX1 // Gene-TRE:NRP NUCLEOLIN-RELATED PROTEIN NRP. length=715;0 /// Q99K50 // Gene-TRE:NCL NUCLEOLIN. length=707;0 /// Q9CT46 // Gene-TRE:NCL 10 DAYS EMBRYO CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:2600013M03, FULL INSERT SEQUENCE (FRAGMENT). length=444;0 /// NUCL_RAT // Gene:NCL Gene:NUC Nucleolin (Protein C23). length=712;0 /// Q9BQ02 // UNKNOWN (PROTEIN FOR MGC:3588) (SIMILAR TO NUCLEOLIN) (PROTEIN FOR MGC:1440). length=482;1e-166 /// NUCL_MOUSE // SW:Q61991 Gene:NCL Gene:NUC Nucleolin (Protein C23). length=706;0 /// NUCL_HUMAN // Gene:NCL Nucleolin (Protein C23). length=706;0" 1369442_at RAE230A // 89.05% nucleolin-related protein NRP Putative Ortholog /// 160521_at MG-U74Av2 // nucleolin Curated Ortholog /// 1415771_at MOE430A // nucleolin Curated Ortholog /// 1415772_at MOE430A // nucleolin Curated Ortholog /// 1415773_at MOE430A // nucleolin Curated Ortholog /// U01139_s_at Mu11KsubA // nucleolin Curated Ortholog /// X07699_s_at Mu11KsubB // nucleolin Curated Ortholog /// 100144_at MG-U74Av2 // nucleolin Curated Ortholog /// 1456528_x_at MOE430A // nucleolin Curated Ortholog /// 1426813_at MOE430A // nucleolin Curated Ortholog chr2q37.1 // 231051436-231052106 // - // 100 --- 200611_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank AB010427.2 "gb:AB010427.2 /DEF=Homo sapiens mRNA for NORI-1, complete cds. /FEA=mRNA /PROD=NORI-1 /DB_XREF=gi:5103672 /UG=Hs.85100 WD repeat domain 1 /FL=gb:BC000201.1 gb:BC002489.1 gb:AF020056.1 gb:AB010427.2 gb:NM_017491.1" g5103672 Hs.85100.1 "1500074404 (1 transcript, 1 gene cluster)" WD repeat domain 1 WDR1 Chr:4p16.1 Hs.85100 9948 O75083 /// Q8N6E5 /// Q9UG05 --- --- ENSG00000071127 --- NM_005112 // WD repeat-containing protein 1 isoform 2 /// NM_017491 // WD repeat-containing protein 1 isoform 1 7605 // hearing // predicted/computed --- 5515 // protein binding // predicted/computed --- --- --- --- --- --- --- IPR001680 // G-protein beta WD-40 repeat "WD40 // WD domain, G-beta repeat;1.5e-54 /// WD40 // WD domain, G-beta repeat;1.1e-66" PR00319 // Beta G-protein (transducin) signature;0.00053 d1k8kc_ // b.69.4.1 // Arp2/3 complex 41 kDa subunit ARPC1 ;2.77e-80 --- --- 9257257 // WD repeat-containing protein 1 isoform 1 [Homo sapiens];0.0 /// 4827056 // WD repeat-containing protein 1 isoform 2 [Homo sapiens];0.0 /// 12652891 // WD repeat domain 1 [Homo sapiens];0.0 Q9UQE0 // WDR1 PROTEIN. length=534;0 /// WDR1_HUMAN // SW:O75313 SW:Q9UQE0 SW:Q9UG78 Gene:WDR1 WD-repeat protein 1 (Actin interacting protein 1) (AIP1) (NORI-1). length=606;0 /// Q9DBM8 // Gene-TRE:WDR1 WD REPEAT DOMAIN 1. length=606;0 /// Q9UG78 // Gene-TRE:DKFZP586I2219 HYPOTHETICAL 59.8 KDA PROTEIN (FRAGMENT). length=549;0 /// Q9UG05 // Gene-TRE:DKFZP586P1922 HYPOTHETICAL 25.3 KDA PROTEIN (FRAGMENT). length=234;1e-134 /// Q9DC08 // Gene-TRE:WDR1 WD REPEAT DOMAIN 1. length=606;0 /// WDR1_MOUSE // Gene:WDR1 WD-repeat protein 1 (Actin interacting protein 1) (AIP1). length=606;0 w71236_s_at Mu11KsubB // WD repeat domain 1 Curated Ortholog /// 168436_at MG-U74Cv2 // WD repeat domain 1 Curated Ortholog /// 1423054_at MOE430A // WD repeat domain 1 Curated Ortholog /// 96075_at MG-U74Av2 // WD repeat domain 1 Curated Ortholog /// W91568_rc_s_at Mu11KsubB // WD repeat domain 1 Curated Ortholog /// 1437591_a_at MOE430A // WD repeat domain 1 Curated Ortholog /// 1450851_at MOE430A // WD repeat domain 1 Curated Ortholog chr4p16.1 // 10027223-10029435 // - // 99 Hs.85100 // 8 // NM_017491 // WD repeat domain 1 // chr4 // 10026349-10068871 // - 200612_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_001282.1 "gb:NM_001282.1 /DEF=Homo sapiens adaptor-related protein complex 2, beta 1 subunit (AP2B1), mRNA. /FEA=mRNA /GEN=AP2B1 /PROD=adaptor-related protein complex 2, beta 1subunit /DB_XREF=gi:4557468 /UG=Hs.74626 adaptor-related protein complex 2, beta 1 subunit /FL=gb:M34175.1 gb:NM_001282.1" g4557468 Hs.74626.0 "1500074405 (1 transcript, 1 gene cluster)" "adaptor-related protein complex 2, beta 1 subunit" AP2B1 Chr:17q11.2-q12 Hs.74626 163 P21851 /// Q96EL6 /// Q96J19 --- --- ENSG00000006125 --- "NM_001282 // adaptor-related protein complex 2, beta 1 subunit" 6899 // non-selective vesicle transport // predicted/computed 5906 // clathrin adaptor // predicted/computed /// 5803 // secretory vesicle // predicted/computed 5480 // vesicle transport // predicted/computed Vesicle coat protein // predicted/computed --- --- --- Secretory vesicles // predicted/computed --- --- "IPR002553 // Adaptin, N-terminal /// IPR001121 // Gamma-adaptin, C-terminal" Alpha_adaptinC2 // Adaptin C-terminal domain;2.2e-34 /// Adaptin_N // Adaptin N terminal region;5.9e-213 IPB002553 // Adaptin N terminal region;8.7e-06 "d1e42a1 // b.1.10.1 // Beta2-adaptin AP2, N-terminal subdomain ;1.03e-59 /// d1e42a2 // d.105.1.1 // Beta2-adaptin AP2, C-terminal subdomain ;2.93e-53" --- --- "4557469 // adaptor-related protein complex 2, beta 1 subunit; adaptin, beta 2 (beta); clathrin-associated/assembly/adaptor protein, large, beta 1 [Homo sapiens];0.0 /// 21313640 // adaptor-related protein complex 2, beta 1 subunit; RIKEN cDNA 1300012O03 gene [Mus musculus];0.0" "A1B1_RAT // Gene:AP1B1 Gene:ADTB1 Adapter-related protein complex 1 beta 1 subunit (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta large chain). length=949;0 /// Q96EL6 // UNKNOWN (PROTEIN FOR IMAGE:4558274) (FRAGMENT). length=556;0 /// A2B1_HUMAN // Gene:AP2B1 Gene:CLAPB1 ADAPTER-RELATED PROTEIN COMPLEX 2 BETA 1 SUBUNIT (BETA-ADAPTIN) (PLASMA MEMBRANE ADAPTOR HA2/AP2 ADAPTIN BETA SUBUNIT) (CLATHRIN ASSEMBLY PROTEIN COMPLEX 2 BETA LARGE CHAIN) (AP105B). length=937;0 /// Q9DBG3 // Gene-TRE:1300012O03RIK 1300012O03RIK PROTEIN. length=937;0 /// A1B1_HUMAN // SW:P78436 Gene:AP1B1 Gene:ADTB1 Gene:BAM22 Adapter-related protein complex 1 beta 1 subunit (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta large chain). length=949;0 /// Q9M649 // BETA-ADAPTIN-LIKE PROTEIN C (FRAGMENT). length=890;0 /// Q24253 // Gene-TRE:BAP Gene-TRE:BAD1 Gene-TRE:CG12532 BAP PROTEIN. length=921;0 /// Q922E2 // ADAPTOR PROTEIN COMPLEX AP-1, BETA 1 SUBUNIT. length=943;0 /// Q96J19 // SIMILAR TO ADAPTOR-RELATED PROTEIN COMPLEX 2, BETA 1 SUBUNIT. length=951;0 /// Q9N4F3 // Gene-TRE:Y71H2B.10 Y71H2B.10 PROTEIN. length=827;0 /// A1B1_MOUSE // SW:Q922E2 Gene:AP1B1 Gene:ADTB1 Adapter-related protein complex 1 beta 1 subunit (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta large chain). length=943;0" "M77246_at RG-U34A // 87.16% adaptor-related protein complex 2, beta 1 subunit Putative Ortholog /// M34176_s_at RG-U34A // 87.16% adaptor-related protein complex 2, beta 1 subunit Putative Ortholog /// rc_AA964379_s_at RG-U34A // 87.16% adaptor-related protein complex 2, beta 1 subunit Putative Ortholog /// 1367704_at RAE230A // 87.16% adaptor-related protein complex 2, beta 1 subunit Putative Ortholog /// 1370662_a_at RAE230A // 87.16% adaptor-related protein complex 2, beta 1 subunit Putative Ortholog /// 99515_at MG-U74Av2 // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog /// 1452292_at MOE430A // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog /// 1427077_a_at MOE430A // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog /// Msa.31122.0_s_at Mu11KsubB // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog /// 112778_at MG-U74Bv2 // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog /// Msa.33076.0_s_at Mu11KsubB // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog /// 112779_at MG-U74Bv2 // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog" chr17q12 // 36088642-36089147 // + // 100 "Hs.74626 // 2 // NM_001282 // adaptor-related protein complex 2, beta 1 subunit // chr17 // 35950103-36089239 // +" 200613_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004068.1 "gb:NM_004068.1 /DEF=Homo sapiens adaptor-related protein complex 2, mu 1 subunit (AP2M1), mRNA. /FEA=mRNA /GEN=AP2M1 /PROD=adaptor-related protein complex 2, mu 1 subunit /DB_XREF=gi:4757993 /UG=Hs.152936 adaptor-related protein complex 2, mu 1 subunit /FL=gb:U36188.1 gb:BC004996.1 gb:D63475.1 gb:NM_004068.1" g4757993 Hs.152936.0 --- "adaptor-related protein complex 2, mu 1 subunit" AP2M1 Chr:3q28 Hs.152936 1173 AAH04996 /// AAH14030 /// P20172 /// Q96CW1 --- --- ENSG00000161203 --- "NM_004068 // adaptor-related protein complex 2, mu 1 subunit" 6886 // intracellular protein transport // extended:inferred from electronic annotation; Adap_comp_sub; 3.4e-276 /// 6899 // non-selective vesicle transport // not recorded 5803 // secretory vesicle // not recorded /// 8245 // lysosomal membrane hydrogen-transporting ATPase // experimental evidence /// 5909 // coated vesicle // experimental evidence 5480 // vesicle transport // experimental evidence Vesicle coat protein // experimental evidence --- --- --- Secretory vesicles // not recorded --- --- "IPR001392 // Clathrin adaptor complex, medium chain" Adap_comp_sub // Adaptor complexes medium subunit family;3.4e-276 IPB001392 // Clathrin adaptor complexes medium chain;1.4e-98 d1i31a_ // b.2.7.1 // Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor ;8.28e-101 --- --- "7448828 // assembly protein 50 - human;0.0 /// 6753074 // adaptor-related protein complex AP-2, mu1; clathrin-associated AP-2 [Mus musculus];0.0" A2M1_HUMAN // SW:P53679 Gene:AP2M1 Gene:CLAPM1 Gene:KIAA0109 CLATHRIN COAT ASSEMBLY PROTEIN AP50 (CLATHRIN COAT ASSOCIATED PROTEIN AP50) (PLASMA MEMBRANE ADAPTOR AP-2 50 KDA PROTEIN) (HA2 50 KDA SUBUNIT) (CLATHRIN ASSEMBLY PROTEIN COMPLEX 2 MEDIUM CHAIN) (AP-2 MU 2 CHAIN). length=435;0 /// Q9VD03 // Gene-TRE:AP-50 Gene-TRE:CG7057 AP-50 PROTEIN. length=438;0 /// Q96CW1 // HYPOTHETICAL 49.4 KDA PROTEIN. length=433;0 /// AP50_CAEEL // SW:Q9TZC9 Gene:DPY-23 Gene:AP50 Gene:R160.1 Clathrin coat assembly protein AP50 (Clathrin coat associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (HA2 50 kDa subunit) (Clathrin assembly protein complex 2 medium chain) (Dumpy protein 23). length=441;0 /// O62530 // Gene-TRE:AP-50 Gene-TRE:AP50 Gene-TRE:CG7057 AP-50 PROTEIN. length=437;0 "Msa.15708.0_s_at Mu11KsubB // adaptor protein complex AP-2, mu1 Curated Ortholog /// Msa.20179.0_s_at Mu11KsubB // adaptor protein complex AP-2, mu1 Curated Ortholog /// Msa.1678.0_s_at Mu11KsubB // adaptor protein complex AP-2, mu1 Curated Ortholog /// 1450894_a_at MOE430A // adaptor protein complex AP-2, mu1 Curated Ortholog /// 93362_at MG-U74Av2 // adaptor protein complex AP-2, mu1 Curated Ortholog /// 162442_r_at MG-U74Av2 // adaptor protein complex AP-2, mu1 Curated Ortholog" chr3q27.1 // 184895990-184896545 // + // 99 "Hs.152936 // 7 // NM_004068 // adaptor-related protein complex 2, mu 1 subunit // chr3 // 184887350-184896576 // +" 200614_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004859.1 "gb:NM_004859.1 /DEF=Homo sapiens clathrin, heavy polypeptide (Hc) (CLTC), mRNA. /FEA=mRNA /GEN=CLTC /PROD=clathrin heavy chain /DB_XREF=gi:4758011 /UG=Hs.178710 clathrin, heavy polypeptide (Hc) /FL=gb:D21260.1 gb:NM_004859.1" g4758011 Hs.178710.0 --- "clathrin, heavy polypeptide (Hc)" CLTC Chr:17q11-qter Hs.178710 1213 Q00610 --- --- ENSG00000141367 --- NM_004859 // clathrin heavy chain --- --- --- --- --- --- --- --- --- --- "IPR000547 // 7-Fold repeat in clathrin and VPS proteins /// IPR001473 // Clathrin propeller repeat, N-terminal" Clathrin // Region in Clathrin and VPS;0 /// Clathrin_propel // Clathrin propeller repeat;3.3e-104 IPB000547 // 7-Fold repeat in clathrin and VPS proteins;2.4e-77 d1b89a_ // a.118.1.3 // Clathrin heavy chain proximal leg segment ;9.43e-150 /// d1c9la2 // b.69.6.1 // Clathrin heavy-chain terminal domain ;2.05e-149 --- --- --- "CLH_RAT // Gene:CLTC Clathrin heavy chain. length=1675;0 /// Q9C6U0 // Gene-TRE:T8G24.1 CLATHRIN HEAVY CHAIN, PUTATIVE. length=1516;0 /// CLH1_HUMAN // Gene:CLTC Gene:CLH17 Gene:KIAA0034 Clathrin heavy chain 1 (CLH-17). length=1675;0" "rc_AI235707_g_at RG-U34A // calnexin Curated Ortholog /// rc_AA998523_i_at RG-U34B // calnexin Curated Ortholog /// 1388442_at RAE230A // calnexin Curated Ortholog /// rc_AA946205_at RG-U34B // calnexin Curated Ortholog /// 1371686_at RAE230A // calnexin Curated Ortholog /// rc_AI010725_at RG-U34A // calnexin Curated Ortholog /// 1398842_at RAE230A // clathrin, heavy polypeptide (Hc) Curated Ortholog /// rc_AA893328_at RT-U34 // calnexin Curated Ortholog /// rc_AI010725_g_at RG-U34A // calnexin Curated Ortholog /// rc_AI010725_g_at RT-U34 // calnexin Curated Ortholog /// 1371687_at RAE230A // calnexin Curated Ortholog /// rc_AI010725_at RT-U34 // calnexin Curated Ortholog /// rc_AA893328_at RG-U34A // calnexin Curated Ortholog /// rc_AI235707_g_at RT-U34 // calnexin Curated Ortholog /// rc_AI235707_at RG-U34A // calnexin Curated Ortholog /// J03583_at RG-U34A // clathrin, heavy polypeptide (Hc) Curated Ortholog /// rc_AI235707_at RT-U34 // calnexin Curated Ortholog /// rc_AA998523_f_at RG-U34B // calnexin Curated Ortholog /// aa139495_f_at Mu11KsubA // clathrin, heavy polypeptide (Hc) Curated Ortholog /// 134316_at MG-U74Cv2 // clathrin, heavy polypeptide (Hc) Curated Ortholog /// 160252_at MG-U74Av2 // clathrin, heavy polypeptide (Hc) Curated Ortholog /// 1454626_at MOE430A // clathrin, heavy polypeptide (Hc) Curated Ortholog /// 171610_at MG-U74Cv2 // clathrin, heavy polypeptide (Hc) Curated Ortholog" chr17q23.2 // 60221239-60221532 // + // 100 "Hs.178710 // 4 // NM_004859 // clathrin, heavy polypeptide (Hc) // chr17 // 60146891-60221695 // +" 200615_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AL567295 "Consensus includes gb:AL567295 /FEA=EST /DB_XREF=gi:12920509 /DB_XREF=est:AL567295 /CLONE=CS0DF027YO06 (3 prime) /UG=Hs.74626 adaptor-related protein complex 2, beta 1 subunit /FL=gb:M34175.1 gb:NM_001282.1" Hs.74626.0.A1 Hs.74626.0 "1500074406 (2 transcripts, 1 gene cluster)" "adaptor-related protein complex 2, beta 1 subunit" AP2B1 Chr:17q11.2-q12 Hs.74626 163 P21851 /// Q96EL6 /// Q96J19 --- 601025 ENSG00000006125 --- "NM_001282 // adaptor-related protein complex 2, beta 1 subunit" 6899 // non-selective vesicle transport // predicted/computed 5906 // clathrin adaptor // predicted/computed /// 5803 // secretory vesicle // predicted/computed 5480 // vesicle transport // predicted/computed Vesicle coat protein // predicted/computed --- --- --- Secretory vesicles // predicted/computed --- --- "IPR002553 // Adaptin, N-terminal /// IPR001121 // Gamma-adaptin, C-terminal" Alpha_adaptinC2 // Adaptin C-terminal domain;2.2e-34 /// Adaptin_N // Adaptin N terminal region;5.9e-213 IPB002553 // Adaptin N terminal region;8.7e-06 "d1e42a1 // b.1.10.1 // Beta2-adaptin AP2, N-terminal subdomain ;1.03e-59 /// d1e42a2 // d.105.1.1 // Beta2-adaptin AP2, C-terminal subdomain ;2.93e-53" --- --- "4557469 // adaptor-related protein complex 2, beta 1 subunit; adaptin, beta 2 (beta); clathrin-associated/assembly/adaptor protein, large, beta 1 [Homo sapiens];0.0 /// 21313640 // adaptor-related protein complex 2, beta 1 subunit; RIKEN cDNA 1300012O03 gene [Mus musculus];0.0" "A1B1_RAT // Gene:AP1B1 Gene:ADTB1 Adapter-related protein complex 1 beta 1 subunit (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta large chain). length=949;0 /// A2B1_HUMAN // Gene:AP2B1 Gene:CLAPB1 ADAPTER-RELATED PROTEIN COMPLEX 2 BETA 1 SUBUNIT (BETA-ADAPTIN) (PLASMA MEMBRANE ADAPTOR HA2/AP2 ADAPTIN BETA SUBUNIT) (CLATHRIN ASSEMBLY PROTEIN COMPLEX 2 BETA LARGE CHAIN) (AP105B). length=937;0 /// Q9DBG3 // Gene-TRE:1300012O03RIK 1300012O03RIK PROTEIN. length=937;0 /// Q96EL6 // UNKNOWN (PROTEIN FOR IMAGE:4558274) (FRAGMENT). length=556;1e-158 /// A1B1_HUMAN // SW:P78436 Gene:AP1B1 Gene:ADTB1 Gene:BAM22 Adapter-related protein complex 1 beta 1 subunit (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta large chain). length=949;0 /// Q9M649 // BETA-ADAPTIN-LIKE PROTEIN C (FRAGMENT). length=890;0 /// Q24253 // Gene-TRE:BAP Gene-TRE:BAD1 Gene-TRE:CG12532 BAP PROTEIN. length=921;0 /// Q922E2 // ADAPTOR PROTEIN COMPLEX AP-1, BETA 1 SUBUNIT. length=943;0 /// Q96J19 // SIMILAR TO ADAPTOR-RELATED PROTEIN COMPLEX 2, BETA 1 SUBUNIT. length=951;0 /// Q9N4F3 // Gene-TRE:Y71H2B.10 Y71H2B.10 PROTEIN. length=827;0 /// A1B1_MOUSE // SW:Q922E2 Gene:AP1B1 Gene:ADTB1 Adapter-related protein complex 1 beta 1 subunit (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta large chain). length=943;0" "M77246_at RG-U34A // 87.16% adaptor-related protein complex 2, beta 1 subunit Putative Ortholog /// M34176_s_at RG-U34A // 87.16% adaptor-related protein complex 2, beta 1 subunit Putative Ortholog /// rc_AA964379_s_at RG-U34A // 87.16% adaptor-related protein complex 2, beta 1 subunit Putative Ortholog /// 1367704_at RAE230A // 87.16% adaptor-related protein complex 2, beta 1 subunit Putative Ortholog /// 1370662_a_at RAE230A // 87.16% adaptor-related protein complex 2, beta 1 subunit Putative Ortholog /// 99515_at MG-U74Av2 // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog /// 1452292_at MOE430A // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog /// 1427077_a_at MOE430A // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog /// Msa.31122.0_s_at Mu11KsubB // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog /// 112778_at MG-U74Bv2 // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog /// Msa.33076.0_s_at Mu11KsubB // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog /// 112779_at MG-U74Bv2 // adaptor-related protein complex 2, beta 1 subunit Curated Ortholog" chr17q12 // 36080086-36086823 // + // 100 "Hs.74626 // 4 // NM_001282 // adaptor-related protein complex 2, beta 1 subunit // chr17 // 35950103-36089239 // +" 200616_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank BC000371.1 "gb:BC000371.1 /DEF=Homo sapiens, KIAA0152 gene product, clone MGC:8341, mRNA, complete cds. /FEA=mRNA /PROD=KIAA0152 gene product /DB_XREF=gi:12653206 /UG=Hs.181418 KIAA0152 gene product /FL=gb:BC000371.1 gb:D63486.1 gb:NM_014730.1" g12653206 Hs.181418.0 "1500074407 (1 transcript, 1 gene cluster)" KIAA0152 gene product KIAA0152 Chr:12q24.31 Hs.181418 9761 Q14165 --- --- ENSG00000110917 --- NM_014730 // KIAA0152 gene product --- --- --- --- --- --- --- --- --- --- --- --- --- --- numtm:1;Nin-prob:0.25097;type:tm; --- 7661948 // KIAA0152 gene product [Homo sapiens];e-168 /// 23270915 // Similar to KIAA0152 gene product [Mus musculus];e-155 Y152_HUMAN // Gene:KIAA0152 Hypothetical protein KIAA0152. length=292;1e-169 --- chr12q24.31 // 120730381-120732104 // + // 93 /// chr12q24.31 // 120525568-120527291 // - // 93 Hs.181418 // 4 // NM_014730 // KIAA0152 gene product // chr12 // 120722720-120737410 // + /// Hs.181418 // 4 // NM_014730 // KIAA0152 gene product // chr12 // 120520262-120534954 // - 200617_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_014730.1 "gb:NM_014730.1 /DEF=Homo sapiens KIAA0152 gene product (KIAA0152), mRNA. /FEA=mRNA /GEN=KIAA0152 /PROD=KIAA0152 gene product /DB_XREF=gi:7661947 /UG=Hs.181418 KIAA0152 gene product /FL=gb:BC000371.1 gb:D63486.1 gb:NM_014730.1" g7661947 Hs.181418.0 --- KIAA0152 gene product KIAA0152 Chr:12q24.31 Hs.181418 9761 Q14165 --- --- ENSG00000110917 --- NM_014730 // KIAA0152 gene product --- --- --- --- --- --- --- --- --- --- --- --- --- --- numtm:1;Nin-prob:0.25097;type:tm; --- 7661948 // KIAA0152 gene product [Homo sapiens];e-168 /// 23270915 // Similar to KIAA0152 gene product [Mus musculus];e-155 Y152_HUMAN // Gene:KIAA0152 Hypothetical protein KIAA0152. length=292;1e-168 --- chr12q24.31 // 120736824-120737222 // + // 100 /// chr12q24.31 // 120520450-120520848 // - // 100 Hs.181418 // 2 // NM_014730 // KIAA0152 gene product // chr12 // 120722720-120737410 // + /// Hs.181418 // 2 // NM_014730 // KIAA0152 gene product // chr12 // 120520262-120534954 // - 200618_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_006148.1 "gb:NM_006148.1 /DEF=Homo sapiens LIM and SH3 protein 1 (LASP1), mRNA. /FEA=mRNA /GEN=LASP1 /PROD=LIM and SH3 protein 1 /DB_XREF=gi:5453709 /UG=Hs.75080 LIM and SH3 protein 1 /FL=gb:NM_006148.1" g5453709 Hs.75080.0 --- LIM and SH3 protein 1 LASP1 Chr:17q11-q21.3 Hs.334851 3927 Q14847 /// Q96IG0 --- --- ENSG00000002834 --- NM_006148 // LIM and SH3 protein 1 --- --- 5070 // SH3/SH2 adaptor protein // predicted/computed --- --- --- --- --- --- --- "IPR000900 // Nebulin /// IPR001781 // Zn-binding protein, LIM /// IPR001452 // SH3 domain" Nebulin // Nebulin repeat;6.7e-21 /// SH3 // SH3 domain;2.1e-15 /// LIM // LIM domain;2.7e-11 PR00510 // Nebulin signature;0.00076 "d1shfa_ // b.34.2.1 // Fyn proto-oncogene tyrosine kinase, SH3 domain ;1.3e-16" --- --- 5453710 // LIM and SH3 protein 1; Lasp-1 [Homo sapiens];e-156 /// 2135552 // Lasp-1 protein - human;e-155 Q9DC07 // Gene-TRE:1200007O21RIK 1200007O21RIK PROTEIN. length=270;2e-94 /// LAS1_HUMAN // SW:Q96ED2 Gene:LASP1 Gene:MLN50 LIM and SH3 domain protein 1 (LASP-1) (MLN 50). length=261;1e-156 /// LAS1_MOUSE // SW:Q62416 Gene:LASP1 Gene:MLN50 LIM AND SH3 DOMAIN PROTEIN 1 (LASP-1) (MLN 50). length=263;1e-150 /// Q99MZ8 // LASP-1. length=263;1e-151 /// Q96IG0 // LIM AND SH3 PROTEIN 1. length=323;1e-160 /// Q96ED2 // SIMILAR TO LIM AND SH3 PROTEIN 1. length=261;1e-155 1387844_at RAE230A // 90.52% LIM and SH3 protein 1 Putative Ortholog /// 1395883_at RAE230B // 90.52% ESTs Putative Ortholog /// 1439264_x_at MOE430A // LIM and SH3 protein 1 Curated Ortholog /// 1460173_at MOE430A // LIM and SH3 protein 1 Curated Ortholog /// 1438634_x_at MOE430A // LIM and SH3 protein 1 Curated Ortholog /// aa034530_s_at Mu11KsubA // LIM and SH3 protein 1 Curated Ortholog /// 1456309_x_at MOE430A // LIM and SH3 protein 1 Curated Ortholog /// u58882_s_at Mu11KsubA // LIM and SH3 protein 1 Curated Ortholog /// 1456578_x_at MOE430A // LIM and SH3 protein 1 Curated Ortholog /// 1455470_x_at MOE430A // LIM and SH3 protein 1 Curated Ortholog /// 1438633_x_at MOE430A // LIM and SH3 protein 1 Curated Ortholog /// 93793_at MG-U74Av2 // LIM and SH3 protein 1 Curated Ortholog /// 1448207_at MOE430A // LIM and SH3 protein 1 Curated Ortholog /// 1456469_x_at MOE430A // LIM and SH3 protein 1 Curated Ortholog /// 93930_at MG-U74Av2 // LIM and SH3 protein 1 Curated Ortholog chr17q12 // 39075227-39075796 // + // 91 Hs.334851 // 5 // NM_006148 // LIM and SH3 protein 1 // chr17 // 39024178-39075826 // + 200619_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_006842.1 "gb:NM_006842.1 /DEF=Homo sapiens splicing factor 3b, subunit 2, 145kD (SF3B2), mRNA. /FEA=mRNA /GEN=SF3B2 /PROD=splicing factor 3b, subunit 2, 145kD /DB_XREF=gi:5803154 /UG=Hs.75916 splicing factor 3b, subunit 2, 145kD /FL=gb:U41371.1 gb:NM_006842.1" g5803154 Hs.75916.0 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- "Q969K1 // UNKNOWN (PROTEIN FOR MGC:15879) (SIMILAR TO SPLICING FACTOR 3B, SUBUNIT 2, 145KD). length=636;0 /// Q9CS24 // Gene-TRE:2810441F20RIK 2810441F20RIK PROTEIN (FRAGMENT). length=301;1e-156 /// S145_HUMAN // Gene:SF3B2 Gene:SAP145 SPLICING FACTOR 3B PROTEIN, SUBUNIT 2 (SF3B150) (SPLICEOSOME ASSOCIATED PROTEIN 145) (SAP 145). length=872;0 /// Q96CM6 // SIMILAR TO SPLICING FACTOR 3B, SUBUNIT 2, 145KD (FRAGMENT). length=374;0 /// Q9BWD2 // SPLICING FACTOR 3B, SUBUNIT 2, 145KD (FRAGMENT). length=897;0" --- chr11q13.2 // 67512581-67517750 // + // 100 "Hs.75916 // 1 // BC009445 // Unknown (protein for MGC:15879) [Homo sapiens], mRNA sequence // chr11 // 67504117-67517817 // + /// Hs.406423 // 4 // BC000401 // splicing factor 3b, subunit 2, 145kDa // chr11 // 67501291-67517810 // +" 200620_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004872.1 "gb:NM_004872.1 /DEF=Homo sapiens chromosome 1 open reading frame 8 (C1ORF8), mRNA. /FEA=mRNA /GEN=C1ORF8 /PROD=chromosome 1 open reading frame 8 /DB_XREF=gi:4758571 /UG=Hs.11441 chromosome 1 open reading frame 8 /FL=gb:BC003106.1 gb:AF290615.1 gb:AF047439.1 gb:NM_004872.1" g4758571 Hs.11441.0 --- chromosome 1 open reading frame 8 C1orf8 Chr:1p36-p31 Hs.11441 9528 BAC11658 /// Q96KX7 /// Q9BXS4 --- --- ENSG00000116209 --- NM_004872 // chromosome 1 open reading frame 8 --- --- --- --- --- --- --- --- --- --- --- --- --- --- numtm:1;Nin-prob:0.23401;type:tm; --- 16741048 // chromosome 1 open reading frame 8 [Homo sapiens];0.0 /// 20070191 // chromosome 1 open reading frame 8 [Homo sapiens];0.0 Q9D1P9 // Gene-TRE:1110001M20RIK 1110001M20RIK PROTEIN. length=300;1e-167 /// Q99LY8 // UNKNOWN (PROTEIN FOR IMAGE:3486055) (FRAGMENT). length=82;2e-37 /// O75393 // HYPOTHETICAL 33.8 KDA PROTEIN (SIMILAR TO CHROMOSOME 1 OPEN READING FRAME 8). length=300;1e-175 aa543785_g_at Mu11KsubA // 85.2% RIKEN cDNA 1110001M20 gene Putative Ortholog /// aa543785_at Mu11KsubA // 85.2% RIKEN cDNA 1110001M20 gene Putative Ortholog /// AA611734_i_at Mu11KsubA // 85.2% RIKEN cDNA 1110001M20 gene Putative Ortholog /// 1450046_at MOE430A // open reading frame 18 Curated Ortholog /// 161667_r_at MG-U74Av2 // 85.2% RIKEN cDNA 1110001M20 gene Putative Ortholog /// 95477_at MG-U74Av2 // 85.2% RIKEN cDNA 1110001M20 gene Putative Ortholog /// AA611734_f_at Mu11KsubA // 85.2% RIKEN cDNA 1110001M20 gene Putative Ortholog chr1p32.3 // 53386045-53395751 // - // 100 Hs.11441 // 8 // NM_004872 // chromosome 1 open reading frame 8 // chr1 // 53385622-53407175 // - 200621_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004078.1 "gb:NM_004078.1 /DEF=Homo sapiens cysteine and glycine-rich protein 1 (CSRP1), mRNA. /FEA=mRNA /GEN=CSRP1 /PROD=cysteine and glycine-rich protein 1 /DB_XREF=gi:4758085 /UG=Hs.108080 cysteine and glycine-rich protein 1 /FL=gb:M33146.1 gb:NM_004078.1" g4758085 Hs.108080.0 --- cysteine and glycine-rich protein 1 CSRP1 Chr:1q32 Hs.108080 1465 P21291 /// Q9BTA4 --- --- ENSG00000159176 --- NM_004078 // cysteine and glycine-rich protein 1 --- --- 8270 // zinc binding // predicted/computed --- --- --- --- --- --- --- "IPR001781 // Zn-binding protein, LIM" LIM // LIM domain;9.1e-35 IPB001781 // LIM domain;4e-09 --- --- --- 4758086 // cysteine and glycine-rich protein 1; cysteine-rich protein; LIM-domain protein [Homo sapiens];e-118 /// 6681069 // cysteine rich protein 1; cysteine rich protein [Mus musculus];e-117 CYSR_RAT // Gene:CSRP1 Gene:CSRP CYSTEINE-RICH PROTEIN 1 (CRP1) (CRP). length=192;1e-117 /// P97314 // Gene-TRE:CSRP2 DOUBLE LIM PROTEIN-1 (CYSTEINE-RICH PROTEIN 2) (SIMILAR TO CYSTEINE-RICH PROTEIN 2). length=193;6e-97 /// Q9CZG5 // Gene-TRE:CSRP2 CYSTEINE-RICH PROTEIN 2. length=193;1e-96 /// CSR2_HUMAN // SW:Q93030 Gene:CSRP2 Gene:SMLIM Smooth muscle cell LIM protein (Cysteine-rich protein 2) (CRP2). length=192;1e-95 /// CYSR_HUMAN // Gene:CSRP1 Gene:CSRP Gene:CYRP CYSTEINE-RICH PROTEIN 1 (CRP1) (CRP). length=192;1e-117 /// Q9D1M8 // Gene-TRE:CSRP2 CYSTEINE-RICH PROTEIN 2. length=193;2e-96 /// Q9BTA4 // SIMILAR TO CYSTEINE AND GLYCINE-RICH PROTEIN 1 (FRAGMENT). length=168;1e-101 /// P97315 // Gene-TRE:CSRP Gene-TRE:CRP1 CYSTEIN RICH PROTEIN-1 (SIMILAR TO CYSTEINE RICH PROTEIN). length=193;1e-118 /// CSR2_RAT // Gene:CSRP2 Gene:SMLIM Smooth muscle cell LIM protein (Cysteine-rich protein 2) (CRP2). length=192;2e-96 "M28671_at RG-U34A // ESTs, Highly similar to GCB_RAT IG GAMMA-2B CHAIN C REGION [R.norvegicus] Curated Ortholog /// 1388272_at RAE230A // ESTs, Highly similar to GCB_RAT IG GAMMA-2B CHAIN C REGION [R.norvegicus] Curated Ortholog /// 1370057_at RAE230A // cysteine rich protein 1 Curated Ortholog /// rc_AI234146_at RG-U34A // cysteine rich protein 1 Curated Ortholog /// rc_AI234100_f_at RG-U34C // cysteine rich protein 1 Curated Ortholog" chr1q32.1 // 196889573-196890103 // - // 100 Hs.108080 // 6 // NM_004078 // cysteine and glycine-rich protein 1 // chr1 // 196889530-196913121 // - 200622_x_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AV685208 "Consensus includes gb:AV685208 /FEA=EST /DB_XREF=gi:10287071 /DB_XREF=est:AV685208 /CLONE=GKCCXA06 /UG=Hs.141011 calmodulin 3 (phosphorylase kinase, delta) /FL=gb:BC005137.1 gb:J04046.1 gb:NM_005184.1" Hs.141011.0.S1 Hs.141011.0 "1500074408 (30 transcripts, 23 gene clusters)" "calmodulin 3 (phosphorylase kinase, delta)" CALM3 Chr:19q13.2-q13.3 Hs.334330 808 AAH05137 /// P02593 /// Q9BRL5 --- 114183 ENSG00000160014 --- "NM_005184 // calmodulin 3 (phosphorylase kinase, delta)" --- --- 5509 // calcium ion binding // predicted/computed Small molecule-binding protein // not recorded --- --- --- --- G13_Signaling_Pathway /// G_Protein_Signaling /// Glycogen_Metabolism --- IPR002048 // Calcium-binding EF-hand /// IPR001125 // Recoverin efhand // EF hand;4e-39 IPB002048 // EF-hand family;6.1e-06 d1cll__ // a.39.1.5 // Calmodulin ;8.2e-48 --- --- "4502549 // calmodulin 2 (phosphorylase kinase, delta); phosphorylase kinase delta [Homo sapiens];2e-78 /// 4885109 // calmodulin 3 (phosphorylase kinase, delta); Calmodulin-3 [Homo sapiens];4e-82" "Q41984 // CALMODULIN 1 (FRAGMENT). length=41;2e-12 /// Q9V339 // Gene-TRE:CG11165 CG11165 PROTEIN. length=148;3e-41 /// Q96HK3 // CALMODULIN 2 (PHOSPHORYLASE KINASE, DELTA). length=149;4e-78 /// CALM_HUMAN // SW:P99014 SW:P70667 SW:Q61379 SW:Q61380 Gene:CALM1 Gene:CAM1 Gene:CALM Gene:CAM Gene:CALM2 Gene:CAM2 Gene:CAMB) AND Gene:CALM3 Gene:CAM3 Gene:CAMC Calmodulin. length=148;1e-78 /// O16305 // Gene-TRE:T21H3.3 Gene-TRE:CMD-1 T21H3.3 PROTEIN. length=149;4e-77 /// CAL2_ARATH // Gene:CAM2 Gene:CAL1 Gene:AT2G41110 Gene:T3K9.12 Gene:CAM3 Gene:CAM5 Gene:TCH1 Calmodulin-2/3/5. length=148;4e-71 /// CALM_HUMAN // SW:P99014 SW:P70667 SW:Q61379 SW:Q61380 Gene:CALM1 Gene:CAM1 Gene:CALM Gene:CAM Gene:CALM2 Gene:CAM2 Gene:CAMB) AND Gene:CALM3 Gene:CAM3 Gene:CAMC Calmodulin. length=148;6e-78 /// Q9BQN9 // Gene-TRE:TNNC2 DJ447F3.5.2 (FAST TROPONIN C2 (ISOFORM 2)). length=145;5e-36 /// CALL_DROME // SW:Q9VBL9 Gene:AND Gene:CAMR97A Gene:CG17769 CALMODULIN RELATED PROTEIN 97A (ANDROCAM PROTEIN). length=148;2e-52 /// Q96HY3 // CALMODULIN 2 (PHOSPHORYLASE KINASE, DELTA). length=113;1e-57 /// CALM_HUMAN // SW:P99014 SW:P70667 SW:Q61379 SW:Q61380 Gene:CALM1 Gene:CAM1 Gene:CALM Gene:CAM Gene:CALM2 Gene:CAM2 Gene:CAMB) AND Gene:CALM3 Gene:CAM3 Gene:CAMC Calmodulin. length=148;3e-78 /// CALM_YEAST // Gene:CMD1 Gene:YBR109C Gene:YBR0904 Calmodulin (CaM). length=147;4e-47 /// CALM_DROME // SW:Q9V3T4 Gene:CAM Gene:CAL Gene:CG8472 Calmodulin. length=148;1e-76 /// CAL6_ARATH // Gene:CAM6 Calmodulin-6. length=148;5e-71 /// CAL1_ARATH // Gene:CAM1 Calmodulin-1 (Fragment). length=136;5e-65 /// Q9D6P8 // Gene-TRE:2310068O22RIK 2310068O22RIK PROTEIN. length=149;2e-70 /// Q41981 // CALMODULIN 1 (FRAGMENT). length=106;1e-46 /// Q9VBL9 // Gene-TRE:CG17769 CG17769 PROTEIN. length=148;2e-52 /// Q91VQ9 // UNKNOWN (PROTEIN FOR IMAGE:3153823) (FRAGMENT). length=97;2e-48 /// CALL_HUMAN // Gene:CALML3 CALMODULIN-RELATED PROTEIN NB-1 (CALMODULIN-LIKE PROTEIN) (CLP). length=148;1e-67 /// Q99K52 // Gene-TRE:2310068O22RIK RIKEN CDNA 2310068O22 GENE. length=149;6e-70 /// Q13942 // Gene-TRE:CAMIII CALMODULIN. length=152;1e-79 /// CAL4_ARATH // Gene:CAM4 Calmodulin-4. length=148;2e-70 /// CLSP_HUMAN // Gene:CLSP CALMODULIN-LIKE SKIN PROTEIN. length=146;1e-34 /// Q9D6G4 // Gene-TRE:CALM1 Gene-TRE:CALM ADULT MALE HIPPOCAMPUS CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:2900055D23, FULL INSERT SEQUENCE. length=149;2e-78 /// Q9V3T4 // Gene-TRE:CAM Gene-TRE:CAM A CAM PROTEIN (CALMODULIN A). length=149;3e-77 /// Q9FJ05 // Gene-TRE:T27F4.1 Gene-TRE:F28G11.13 CALMODULIN-LIKE PROTEIN (CALMODULIN-4) (HYPOTHETICAL 16.9 KDA PROTEIN) (PUTATIVE CALMODULIN PROTEIN) (AT5G37780/K22F20_20). length=149;1e-71" X14265_at RN-U34 // 89.84% calmodulin 3 Putative Ortholog /// rc_AA944426_at RG-U34B // 89.84% calmodulin 3 Putative Ortholog /// 1370873_at RAE230A // 89.84% calmodulin 3 Putative Ortholog /// X14265_at RG-U34A // 89.84% calmodulin 3 Putative Ortholog /// 1368101_at RAE230A // 89.84% calmodulin 3 Putative Ortholog /// Msa.3544.0_s_at Mu11KsubB // calmodulin 3 Curated Ortholog /// Msa.1497.0_f_at Mu11KsubB // calmodulin 3 Curated Ortholog /// 1450864_at MOE430A // calmodulin 3 Curated Ortholog /// 1438826_x_at MOE430A // calmodulin 3 Curated Ortholog /// M19380_f_at Mu11KsubA // calmodulin 3 Curated Ortholog /// 92631_f_at MG-U74Av2 // calmodulin 3 Curated Ortholog /// 92632_at MG-U74Av2 // calmodulin 3 Curated Ortholog /// 1438825_at MOE430A // calmodulin 3 Curated Ortholog /// 1426710_at MOE430A // calmodulin 3 Curated Ortholog chr19q13.32 // 47502333-47503401 // + // 100 --- 200623_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_005184.1 "gb:NM_005184.1 /DEF=Homo sapiens calmodulin 3 (phosphorylase kinase, delta) (CALM3), mRNA. /FEA=mRNA /GEN=CALM3 /PROD=calmodulin 3 (phosphorylase kinase, delta) /DB_XREF=gi:4885108 /UG=Hs.141011 calmodulin 3 (phosphorylase kinase, delta) /FL=gb:BC005137.1 gb:J04046.1 gb:NM_005184.1" g4885108 Hs.141011.0 "1500074409 (2 transcripts, 1 gene cluster)" "calmodulin 3 (phosphorylase kinase, delta)" CALM3 Chr:19q13.2-q13.3 Hs.334330 808 AAH05137 /// P02593 /// Q9BRL5 --- --- ENSG00000160014 --- "NM_005184 // calmodulin 3 (phosphorylase kinase, delta)" --- --- 5509 // calcium ion binding // predicted/computed Small molecule-binding protein // not recorded --- --- --- --- G13_Signaling_Pathway /// G_Protein_Signaling /// Glycogen_Metabolism --- IPR002048 // Calcium-binding EF-hand /// IPR001125 // Recoverin efhand // EF hand;4e-39 IPB002048 // EF-hand family;6.1e-06 d1cll__ // a.39.1.5 // Calmodulin ;8.2e-48 --- --- "4502549 // calmodulin 2 (phosphorylase kinase, delta); phosphorylase kinase delta [Homo sapiens];2e-78 /// 4885109 // calmodulin 3 (phosphorylase kinase, delta); Calmodulin-3 [Homo sapiens];4e-82" "Q9BRL5 // SIMILAR TO CALMODULIN 2 (PHOSPHORYLASE KINASE, DELTA). length=147;2e-61 /// Q9VBL9 // Gene-TRE:CG17769 CG17769 PROTEIN. length=148;1e-52 /// Q41984 // CALMODULIN 1 (FRAGMENT). length=41;2e-12 /// Q9V339 // Gene-TRE:CG11165 CG11165 PROTEIN. length=148;3e-41 /// Q96HK3 // CALMODULIN 2 (PHOSPHORYLASE KINASE, DELTA). length=149;4e-78 /// CALM_HUMAN // SW:P99014 SW:P70667 SW:Q61379 SW:Q61380 Gene:CALM1 Gene:CAM1 Gene:CALM Gene:CAM Gene:CALM2 Gene:CAM2 Gene:CAMB) AND Gene:CALM3 Gene:CAM3 Gene:CAMC Calmodulin. length=148;1e-78 /// Q13942 // Gene-TRE:CAMIII CALMODULIN. length=152;4e-82 /// CALM_HUMAN // SW:P99014 SW:P70667 SW:Q61379 SW:Q61380 Gene:CALM1 Gene:CAM1 Gene:CALM Gene:CAM Gene:CALM2 Gene:CAM2 Gene:CAMB) AND Gene:CALM3 Gene:CAM3 Gene:CAMC Calmodulin. length=148;6e-78 /// Q96HY3 // CALMODULIN 2 (PHOSPHORYLASE KINASE, DELTA). length=113;1e-57 /// CALM_HUMAN // SW:P99014 SW:P70667 SW:Q61379 SW:Q61380 Gene:CALM1 Gene:CAM1 Gene:CALM Gene:CAM Gene:CALM2 Gene:CAM2 Gene:CAMB) AND Gene:CALM3 Gene:CAM3 Gene:CAMC Calmodulin. length=148;3e-78 /// CALM_YEAST // Gene:CMD1 Gene:YBR109C Gene:YBR0904 Calmodulin (CaM). length=147;4e-47 /// CALM_DROME // SW:Q9V3T4 Gene:CAM Gene:CAL Gene:CG8472 Calmodulin. length=148;1e-76 /// O16305 // Gene-TRE:T21H3.3 Gene-TRE:CMD-1 T21H3.3 PROTEIN. length=149;3e-77 /// CAL1_ARATH // Gene:CAM1 Calmodulin-1 (Fragment). length=136;5e-65 /// Q9D6P8 // Gene-TRE:2310068O22RIK 2310068O22RIK PROTEIN. length=149;2e-70 /// CAL2_ARATH // Gene:CAM2 Gene:CAL1 Gene:AT2G41110 Gene:T3K9.12 Gene:CAM3 Gene:CAM5 Gene:TCH1 Calmodulin-2/3/5. length=148;3e-71 /// Q41981 // CALMODULIN 1 (FRAGMENT). length=106;1e-46 /// Q91VQ9 // UNKNOWN (PROTEIN FOR IMAGE:3153823) (FRAGMENT). length=97;2e-48 /// CALL_HUMAN // Gene:CALML3 CALMODULIN-RELATED PROTEIN NB-1 (CALMODULIN-LIKE PROTEIN) (CLP). length=148;1e-67 /// Q9BQN9 // Gene-TRE:TNNC2 DJ447F3.5.2 (FAST TROPONIN C2 (ISOFORM 2)). length=145;4e-36 /// CALL_DROME // SW:Q9VBL9 Gene:AND Gene:CAMR97A Gene:CG17769 CALMODULIN RELATED PROTEIN 97A (ANDROCAM PROTEIN). length=148;1e-52 /// Q99K52 // Gene-TRE:2310068O22RIK RIKEN CDNA 2310068O22 GENE. length=149;6e-70 /// CAL4_ARATH // Gene:CAM4 Calmodulin-4. length=148;2e-70 /// CLSP_HUMAN // Gene:CLSP CALMODULIN-LIKE SKIN PROTEIN. length=146;1e-34 /// CAL6_ARATH // Gene:CAM6 Calmodulin-6. length=148;4e-71 /// Q9D6G4 // Gene-TRE:CALM1 Gene-TRE:CALM ADULT MALE HIPPOCAMPUS CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:2900055D23, FULL INSERT SEQUENCE. length=149;2e-78 /// Q9V3T4 // Gene-TRE:CAM Gene-TRE:CAM A CAM PROTEIN (CALMODULIN A). length=149;3e-77 /// Q9FJ05 // Gene-TRE:T27F4.1 Gene-TRE:F28G11.13 CALMODULIN-LIKE PROTEIN (CALMODULIN-4) (HYPOTHETICAL 16.9 KDA PROTEIN) (PUTATIVE CALMODULIN PROTEIN) (AT5G37780/K22F20_20). length=149;1e-71" X14265_at RN-U34 // 89.84% calmodulin 3 Putative Ortholog /// rc_AA944426_at RG-U34B // 89.84% calmodulin 3 Putative Ortholog /// 1370873_at RAE230A // 89.84% calmodulin 3 Putative Ortholog /// X14265_at RG-U34A // 89.84% calmodulin 3 Putative Ortholog /// 1368101_at RAE230A // 89.84% calmodulin 3 Putative Ortholog /// Msa.3544.0_s_at Mu11KsubB // calmodulin 3 Curated Ortholog /// Msa.1497.0_f_at Mu11KsubB // calmodulin 3 Curated Ortholog /// 1450864_at MOE430A // calmodulin 3 Curated Ortholog /// 1438826_x_at MOE430A // calmodulin 3 Curated Ortholog /// M19380_f_at Mu11KsubA // calmodulin 3 Curated Ortholog /// 92631_f_at MG-U74Av2 // calmodulin 3 Curated Ortholog /// 92632_at MG-U74Av2 // calmodulin 3 Curated Ortholog /// 1438825_at MOE430A // calmodulin 3 Curated Ortholog /// 1426710_at MOE430A // calmodulin 3 Curated Ortholog chr19q13.32 // 47504481-47504819 // + // 100 "Hs.334330 // 5 // NM_005184 // calmodulin 3 (phosphorylase kinase, delta) // chr19 // 47495451-47504922 // + /// Hs.356019 // 1 // BC015589 // ribosomal protein S5 // chr19 // 47504202-47504933 // +" 200624_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AA577695 Consensus includes gb:AA577695 /FEA=EST /DB_XREF=gi:2355879 /DB_XREF=est:nn22h02.s1 /CLONE=IMAGE:1084659 /UG=Hs.78825 matrin 3 /FL=gb:NM_018834.1 gb:AB018266.1 Hs.78825.0.S1 Hs.78825.0 "1500074410 (2 transcripts, 1 gene cluster)" matrin 3 MATR3 Chr:5q31.2 Hs.78825 9782 AAH15031 /// P43243 /// Q9H4N1 --- 604706 ENSG00000015479 --- NM_018834 // matrin 3 7148 // cell shape and cell size control // predicted/computed 5637 // nuclear inner membrane // predicted/computed 3676 // nucleic acid binding // extended:Unknown; rrm; 0.24 /// 3676 // nucleic acid binding // extended:Unknown; rrm; 0.2 /// 5198 // structural molecule // predicted/computed --- Cell structure // not recorded --- --- Nuclear // experimental evidence /// Nuclear matrix // experimental evidence --- --- "IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) /// IPR000690 // Zn-finger, C2H2 martin type /// IPR003604 // Zn-finger, U1-like /// IPR000822 // Zn-finger, C2H2 type" "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;3.6e-07" --- --- --- --- 23619914 // similar to Matrin 3 [Mus musculus];0.0 /// 21626466 // matrin 3 [Homo sapiens];0.0 Q9R0U5 // Gene-TRE:MATR3 MATRIN3. length=306;1e-169 /// O35833 // MATRIN 3. length=845;0 /// Q9UQ27 // Gene-TRE:KIAA0723 KIAA0723 PROTEIN. length=847;0 /// MAT3_RAT // SW:O35833 Gene:MATR3 MATRIN 3. length=845;0 /// Q9UHW0 // MATRIN 3. length=848;0 /// Q9H4N1 // CLONE CDABP0107 MRNA SEQUENCE. length=407;0 /// MAT3_HUMAN // SW:Q9UQ27 SW:Q9UHW0 Gene:MATR3 Gene:KIAA0723 Matrin 3. length=847;0 M63485_at RG-U34A // 91.65% matrin 3 Putative Ortholog /// 1368151_at RAE230A // 91.65% matrin 3 Putative Ortholog /// 1376762_at RAE230A // 91.65% ESTs Putative Ortholog /// rc_AI104405_at RG-U34C // 91.65% ESTs Putative Ortholog /// aa255049_s_at Mu11KsubA // matrin 3 Curated Ortholog /// 1438368_a_at MOE430A // matrin 3 Curated Ortholog /// 96013_r_at MG-U74Av2 // matrin 3 Curated Ortholog /// 1450874_at MOE430A // matrin 3 Curated Ortholog /// 96012_f_at MG-U74Av2 // matrin 3 Curated Ortholog /// 96011_at MG-U74Av2 // matrin 3 Curated Ortholog /// 1434888_a_at MOE430A // matrin 3 Curated Ortholog /// 163622_at MG-U74Bv2 // matrin 3 Curated Ortholog chr1p21.1 // 105415486-105415967 // - // 95 /// chr3q26.33 // 181707761-181708244 // + // 96 /// chr5q31.2 // 139336910-139340430 // + // 95 --- 200625_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_006367.2 "gb:NM_006367.2 /DEF=Homo sapiens adenylyl cyclase-associated protein (CAP), mRNA. /FEA=mRNA /GEN=CAP /PROD=adenylyl cyclase-associated protein /DB_XREF=gi:10938021 /UG=Hs.104125 adenylyl cyclase-associated protein /FL=gb:NM_006367.2 gb:L12168.1 gb:M98474.1" g10938021 Hs.104125.0 "1500074411 (2 transcripts, 1 gene cluster)" adenylyl cyclase-associated protein CAP Chr:1p34.1 Hs.104125 10487 Q01518 --- --- ENSG00000131236 --- NM_006367 // adenylyl cyclase-associated protein 7190 // adenylate cyclase activation // experimental evidence /// 7163 // establishment and/or maintenance of cell polarity // predicted/computed /// 7165 // signal transduction // predicted/computed --- --- Regulatory subunit // predicted/computed Cell polarity // predicted/computed --- --- --- --- --- IPR001837 // CAP protein CAP // CAP protein;0 PR00049 // Wilm's tumour protein signature;7.7e-05 d1kq5a_ // b.80.5.1 // C-terminal domain of adenylylcyclase associated protein ;4.51e-68 --- --- 5453595 // adenylyl cyclase-associated protein [Homo sapiens];0.0 /// 539940 // adenylyl cyclase-associated protein (CAP) homolog MCH1 - rat;0.0 CAP2_RAT // Gene:CAP2 ADENYLYL CYCLASE-ASSOCIATED PROTEIN 2 (CAP). length=477;1e-170 /// Q9D6L0 // Gene-TRE:2810452G09RIK 2810452G09RIK PROTEIN. length=476;1e-167 /// Q9CYT6 // Gene-TRE:2810452G09RIK 2810452G09RIK PROTEIN. length=476;1e-168 /// CAP1_MOUSE // Gene:CAP1 Gene:CAP ADENYLYL CYCLASE-ASSOCIATED PROTEIN 1 (CAP 1). length=474;0 /// CAP2_HUMAN // Gene:CAP2 Adenylyl cyclase-associated protein 2 (CAP 2). length=477;1e-170 /// CAP1_RAT // Gene:CAP1 Gene:CAP Gene:MCH1 ADENYLYL CYCLASE-ASSOCIATED PROTEIN 1 (CAP 1). length=474;0 /// Q9BYW9 // Gene-TRE:CAP2 DJ273P12.2 (ADENYLYL CYCLASE-ASSOCIATED PROTEIN 2) (FRAGMENT). length=209;6e-72 /// CAP1_HUMAN // Gene:CAP1 Gene:CAP Adenylyl cyclase-associated protein 1 (CAP 1). length=475;0 "1368808_at RAE230A // 90.31% cyclase-associated protein homologue Putative Ortholog /// rc_AA996997_f_at RG-U34B // 90.31% cyclase-associated protein homologue Putative Ortholog /// L11930_at RG-U34A // 90.31% cyclase-associated protein homologue Putative Ortholog /// rc_AA859562_at RG-U34A // 90.31% ESTs Putative Ortholog /// rc_AA850040_at RG-U34B // 90.31% cyclase-associated protein homologue Putative Ortholog /// 1372638_at RAE230A // 90.31% ESTs Putative Ortholog /// 1368809_at RAE230A // 90.31% cyclase-associated protein homologue Putative Ortholog /// Msa.76.0_s_at Mu11KsubB // adenylyl cyclase-associated CAP protein homolog 1 (S. cerevisiae, S. pombe) Curated Ortholog /// 93721_at MG-U74Av2 // adenylyl cyclase-associated CAP protein homolog 1 (S. cerevisiae, S. pombe) Curated Ortholog /// 1417461_at MOE430A // adenylyl cyclase-associated CAP protein homolog 1 (S. cerevisiae, S. pombe) Curated Ortholog /// 1417462_at MOE430A // adenylyl cyclase-associated CAP protein homolog 1 (S. cerevisiae, S. pombe) Curated Ortholog" chr1p34.2 // 39541522-39541840 // + // 99 "Hs.381773 // 1 // BC015615 // Similar to peroxisomal biogenesis factor 6 [Homo sapiens], mRNA sequence // chr1 // 39538982-39541895 // + /// Hs.104125 // 2 // NM_006367 // adenylyl cyclase-associated protein // chr1 // 39510006-39541899 // +" 200626_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_018834.1 "gb:NM_018834.1 /DEF=Homo sapiens matrin 3 (MATR3), mRNA. /FEA=mRNA /GEN=MATR3 /PROD=matrin 3 /DB_XREF=gi:10047081 /UG=Hs.78825 matrin 3 /FL=gb:NM_018834.1 gb:AB018266.1" g10047081 Hs.78825.0 "1500074412 (2 transcripts, 1 gene cluster)" matrin 3 MATR3 Chr:5q31.2 Hs.78825 9782 AAH15031 /// P43243 /// Q9H4N1 --- --- ENSG00000015479 --- NM_018834 // matrin 3 7148 // cell shape and cell size control // predicted/computed 5637 // nuclear inner membrane // predicted/computed 3676 // nucleic acid binding // extended:Unknown; rrm; 0.24 /// 3676 // nucleic acid binding // extended:Unknown; rrm; 0.2 /// 5198 // structural molecule // predicted/computed --- Cell structure // not recorded --- --- Nuclear // experimental evidence /// Nuclear matrix // experimental evidence --- --- "IPR000504 // RNA-binding region RNP-1 (RNA recognition motif) /// IPR000690 // Zn-finger, C2H2 martin type /// IPR003604 // Zn-finger, U1-like /// IPR000822 // Zn-finger, C2H2 type" "rrm // RNA recognition motif. (a.k.a. RRM, RBD, or;3.6e-07" --- --- --- --- 23619914 // similar to Matrin 3 [Mus musculus];0.0 /// 21626466 // matrin 3 [Homo sapiens];0.0 O35833 // MATRIN 3. length=845;0 /// Q9UQ27 // Gene-TRE:KIAA0723 KIAA0723 PROTEIN. length=847;0 /// MAT3_RAT // SW:O35833 Gene:MATR3 MATRIN 3. length=845;0 /// Q9UHW0 // MATRIN 3. length=848;0 /// Q9H4N1 // CLONE CDABP0107 MRNA SEQUENCE. length=407;0 /// MAT3_HUMAN // SW:Q9UQ27 SW:Q9UHW0 Gene:MATR3 Gene:KIAA0723 Matrin 3. length=847;0 M63485_at RG-U34A // 91.65% matrin 3 Putative Ortholog /// 1368151_at RAE230A // 91.65% matrin 3 Putative Ortholog /// 1376762_at RAE230A // 91.65% ESTs Putative Ortholog /// rc_AI104405_at RG-U34C // 91.65% ESTs Putative Ortholog /// aa255049_s_at Mu11KsubA // matrin 3 Curated Ortholog /// 1438368_a_at MOE430A // matrin 3 Curated Ortholog /// 96013_r_at MG-U74Av2 // matrin 3 Curated Ortholog /// 1450874_at MOE430A // matrin 3 Curated Ortholog /// 96012_f_at MG-U74Av2 // matrin 3 Curated Ortholog /// 96011_at MG-U74Av2 // matrin 3 Curated Ortholog /// 1434888_a_at MOE430A // matrin 3 Curated Ortholog /// 163622_at MG-U74Bv2 // matrin 3 Curated Ortholog chr5q31.2 // 139340583-139340881 // + // 99 Hs.78825 // 8 // NM_018834 // matrin 3 // chr5 // 139317985-139341186 // + 200627_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank BC003005.1 "gb:BC003005.1 /DEF=Homo sapiens, unactive progesterone receptor, 23 kD, clone MGC:4004, mRNA, complete cds. /FEA=mRNA /PROD=unactive progesterone receptor, 23 kD /DB_XREF=gi:12804292 /UG=Hs.278270 unactive progesterone receptor, 23 kD /FL=gb:BC003005.1 gb:L24804.1 gb:NM_006601.1" g12804292 Hs.278270.0 --- "unactive progesterone receptor, 23 kD" TEBP Chr:12q13.13 Hs.278270 10728 Q15185 /// Q96LT0 --- --- ENSG00000132498 /// ENSG00000170165 --- "NM_006601 // unactive progesterone receptor, 23 kD" 7165 // signal transduction // predicted/computed --- 5515 // protein binding // experimental evidence --- --- --- --- --- --- --- --- --- --- d1ejfa_ // b.15.1.2 // Co-chaperone p23 ;6.16e-39 --- --- "9790017 // telomerase binding protein, p23; telomerase binding protein p23 [Mus musculus];1e-93 /// 23308579 // unactive progesterone receptor, 23 kD; likely ortholog of mouse telomerase binding protein, p23 [Homo sapiens];9e-95" "Q9D7V0 // Gene-TRE:TEBP Gene-TRE:5730442A20RIK 5730442A20RIK PROTEIN. length=160;1e-93 /// TEBP_MOUSE // SW:Q9WV83 Gene:TEBP Gene:SID3177 Telomerase-binding protein p23 (Hsp90 co-chaperone) (Progesterone receptor complex p23). length=160;4e-94 /// TEBP_HUMAN // SW:Q8WU70 Gene:TEBP Gene:P23 Telomerase-binding protein p23 (Hsp90 co-chaperone) (Progesterone receptor complex p23). length=160;4e-95 /// Q9CRH1 // Gene-TRE:TEBP Gene-TRE:5730442A20RIK 5730442A20RIK PROTEIN (FRAGMENT). length=241;7e-92 /// Q8WU70 // SIMILAR TO UNACTIVE PROGESTERONE RECEPTOR, 23 KDA (FRAGMENT). length=46;7e-21" "1391500_at RAE230B // 75.78% ESTs Putative Ortholog /// rc_AI169592_at RG-U34C // 75.78% ESTs Putative Ortholog /// 1460221_at MOE430A // telomerase binding protein, p23 Curated Ortholog /// 1417998_at MOE430A // telomerase binding protein, p23 Curated Ortholog /// 94259_at MG-U74Av2 // telomerase binding protein, p23 Curated Ortholog" chr12q13.3 // 57282131-57282643 // - // 100 "Hs.278270 // 5 // NM_006601 // unactive progesterone receptor, 23 kD // chr12 // 57282065-57306573 // -" 200628_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank M61715.1 "gb:M61715.1 /DEF=Human tryptophanyl-tRNA synthetase (WRS) mRNA, complete cds. /FEA=mRNA /GEN=WARS /PROD=transfer RNA-Trp synthetase /DB_XREF=gi:340367 /UG=Hs.82030 tryptophanyl-tRNA synthetase /FL=gb:M77804.1 gb:M61715.1 gb:NM_004184.2" g340367 Hs.82030.0 "1500074413 (1 transcript, 1 gene cluster)" tryptophanyl-tRNA synthetase WARS Chr:14q32.31 Hs.374466 7453 P23381 EC:6.1.1.2 --- ENSG00000140105 --- NM_004184 // tryptophanyl-tRNA synthetase 6412 // protein biosynthesis // predicted/computed /// 8285 // negative regulation of cell proliferation // predicted/computed /// 6436 // tryptophanyl-tRNA aminoacylation // predicted/computed 5737 // cytoplasm // predicted/computed /// 5625 // soluble fraction // predicted/computed 4812 // tRNA ligase // extended:inferred from sequence similarity; WHEP-TRS; 3.8e-28 /// 4830 // tryptophan-tRNA ligase // extended:Unknown; 6.1.1.2; 4.34e-150 /// 4830 // tryptophan-tRNA ligase // extended:Unknown; 6.1.1.2; 1.5e-173 /// 4830 // tryptophan-tRNA ligase // extended:Unknown; 6.1.1.2; 1.2e-173 RNA-binding protein // predicted/computed /// tRNA synthetase // experimental evidence /// Ligase // experimental evidence RNA processing/modification // experimental evidence /// Protein synthesis // experimental evidence Soluble // predicted/computed Control of Cell Proliferation // predicted/computed Cytoplasmic // predicted/computed tRNA_Synthetases MAP00380 // Tryptophan metabolism /// MAP00970 // Aminoacyl-tRNA biosynthesis "IPR002305 // Aminoacyl-tRNA synthetase, class Ib /// IPR000738 // WHEP-TRS domain /// IPR001412 // Aminoacyl-tRNA synthetase, class I /// IPR002306 // Tryptophanyl-tRNA synthetase, class Ib" WHEP-TRS // WHEP-TRS domain;3.8e-28 /// tRNA-synt_1b // tRNA synthetases class I (W and Y);1.8e-60 IPB000738 // WHEP-TRS domain;2.2e-18 d1i6la_ // c.26.1.1 // Tryptophanyl-tRNA synthetase (TrpRS) ;1.27e-67 /// d1d2da_ // a.16.1.3 // Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element ;2.59e-11 --- EC:6.1.1.2 // SYW_HUMAN TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) (IFP53) (HWRS).;4.34e-150 4759316 // tryptophanyl-tRNA synthetase; interferon-induced protein 53 [Homo sapiens];0.0 /// 14754335 // similar to Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TRPRS) (IFP53) (hWRS) [Homo sapiens];0.0 "Q9D8R9 // Gene-TRE:WARS TRYPTOPHANYL-TRNA SYNTHETASE. length=329;0 /// SYW_HUMAN // SW:P78535 SW:Q9UDL3 Gene:WARS TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) (IFP53) (HWRS). length=471;0 /// Q9DC65 // Gene-TRE:WARS ADULT MALE LUNG CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:1200002C07, FULL INSERT SEQUENCE. length=475;0" 98606_s_at MG-U74Av2 // tryptophanyl-tRNA synthetase Curated Ortholog /// 1434813_x_at MOE430A // tryptophanyl-tRNA synthetase Curated Ortholog /// 98605_at MG-U74Av2 // tryptophanyl-tRNA synthetase Curated Ortholog /// 161337_f_at MG-U74Av2 // tryptophanyl-tRNA synthetase Curated Ortholog /// 169301_r_at MG-U74Cv2 // tryptophanyl-tRNA synthetase Curated Ortholog /// 1415694_at MOE430B // tryptophanyl-tRNA synthetase Curated Ortholog /// Msa.23820.0_s_at Mu11KsubB // tryptophanyl-tRNA synthetase Curated Ortholog /// 169756_r_at MG-U74Cv2 // tryptophanyl-tRNA synthetase Curated Ortholog /// Msa.2538.0_s_at Mu11KsubB // tryptophanyl-tRNA synthetase Curated Ortholog /// 1425106_a_at MOE430A // tryptophanyl-tRNA synthetase Curated Ortholog /// 1437832_x_at MOE430A // tryptophanyl-tRNA synthetase Curated Ortholog chr14q32.2 // 94616564-94619121 // - // 99 "Hs.82030 // 1 // BC017489 // adaptor-related protein complex 1, mu 1 subunit // chr14 // 94615782-94657459 // - /// Hs.374466 // 5 // NM_004184 // tryptophanyl-tRNA synthetase // chr14 // 94615783-94657384 // -" 200629_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_004184.2 "gb:NM_004184.2 /DEF=Homo sapiens tryptophanyl-tRNA synthetase (WARS), mRNA. /FEA=mRNA /GEN=WARS /PROD=tryptophanyl-tRNA synthetase /DB_XREF=gi:7710155 /UG=Hs.82030 tryptophanyl-tRNA synthetase /FL=gb:M77804.1 gb:M61715.1 gb:NM_004184.2" g7710155 Hs.82030.0 --- tryptophanyl-tRNA synthetase WARS Chr:14q32.31 Hs.374466 7453 P23381 EC:6.1.1.2 --- ENSG00000140105 --- NM_004184 // tryptophanyl-tRNA synthetase 8285 // negative regulation of cell proliferation // predicted/computed /// 6412 // protein biosynthesis // predicted/computed /// 6436 // tryptophanyl-tRNA aminoacylation // predicted/computed 5737 // cytoplasm // predicted/computed /// 5625 // soluble fraction // predicted/computed 4812 // tRNA ligase // extended:inferred from sequence similarity; WHEP-TRS; 3.8e-28 /// 4830 // tryptophan-tRNA ligase // extended:Unknown; 6.1.1.2; 4.34e-150 /// 4830 // tryptophan-tRNA ligase // extended:Unknown; 6.1.1.2; 1.5e-173 /// 4830 // tryptophan-tRNA ligase // extended:Unknown; 6.1.1.2; 1.2e-173 RNA-binding protein // predicted/computed /// tRNA synthetase // experimental evidence /// Ligase // experimental evidence RNA processing/modification // experimental evidence /// Protein synthesis // experimental evidence Soluble // predicted/computed Control of Cell Proliferation // predicted/computed Cytoplasmic // predicted/computed tRNA_Synthetases MAP00380 // Tryptophan metabolism /// MAP00970 // Aminoacyl-tRNA biosynthesis "IPR002305 // Aminoacyl-tRNA synthetase, class Ib /// IPR000738 // WHEP-TRS domain /// IPR001412 // Aminoacyl-tRNA synthetase, class I /// IPR002306 // Tryptophanyl-tRNA synthetase, class Ib" WHEP-TRS // WHEP-TRS domain;3.8e-28 /// tRNA-synt_1b // tRNA synthetases class I (W and Y);1.8e-60 IPB000738 // WHEP-TRS domain;2.2e-18 d1i6la_ // c.26.1.1 // Tryptophanyl-tRNA synthetase (TrpRS) ;1.27e-67 /// d1d2da_ // a.16.1.3 // Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element ;2.59e-11 --- EC:6.1.1.2 // SYW_HUMAN TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) (IFP53) (HWRS).;4.34e-150 4759316 // tryptophanyl-tRNA synthetase; interferon-induced protein 53 [Homo sapiens];0.0 /// 14754335 // similar to Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TRPRS) (IFP53) (hWRS) [Homo sapiens];0.0 "Q9D8R9 // Gene-TRE:WARS TRYPTOPHANYL-TRNA SYNTHETASE. length=329;0 /// SYW_HUMAN // SW:P78535 SW:Q9UDL3 Gene:WARS TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN--TRNA LIGASE) (TRPRS) (IFP53) (HWRS). length=471;0 /// Q9DC65 // Gene-TRE:WARS ADULT MALE LUNG CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:1200002C07, FULL INSERT SEQUENCE. length=475;0" 98606_s_at MG-U74Av2 // tryptophanyl-tRNA synthetase Curated Ortholog /// 1434813_x_at MOE430A // tryptophanyl-tRNA synthetase Curated Ortholog /// 98605_at MG-U74Av2 // tryptophanyl-tRNA synthetase Curated Ortholog /// 161337_f_at MG-U74Av2 // tryptophanyl-tRNA synthetase Curated Ortholog /// 169301_r_at MG-U74Cv2 // tryptophanyl-tRNA synthetase Curated Ortholog /// 1415694_at MOE430B // tryptophanyl-tRNA synthetase Curated Ortholog /// Msa.23820.0_s_at Mu11KsubB // tryptophanyl-tRNA synthetase Curated Ortholog /// 169756_r_at MG-U74Cv2 // tryptophanyl-tRNA synthetase Curated Ortholog /// Msa.2538.0_s_at Mu11KsubB // tryptophanyl-tRNA synthetase Curated Ortholog /// 1425106_a_at MOE430A // tryptophanyl-tRNA synthetase Curated Ortholog /// 1437832_x_at MOE430A // tryptophanyl-tRNA synthetase Curated Ortholog chr14q32.2 // 94615838-94616232 // - // 100 "Hs.82030 // 2 // BC017489 // adaptor-related protein complex 1, mu 1 subunit // chr14 // 94615782-94657459 // - /// Hs.374466 // 2 // NM_004184 // tryptophanyl-tRNA synthetase // chr14 // 94615783-94657384 // -" 200630_x_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AV702810 Consensus includes gb:AV702810 /FEA=EST /DB_XREF=gi:10719140 /DB_XREF=est:AV702810 /CLONE=ADBDGH01 /UG=Hs.145279 SET translocation (myeloid leukemia-associated) /FL=gb:U51924.1 gb:M93651.1 gb:NM_003011.1 Hs.145279.0.A2 Hs.145279.0 "1500074414 (20 transcripts, 16 gene clusters)" SET translocation (myeloid leukemia-associated) SET Chr:9q34 Hs.145279 6418 AAH32749 /// Q01105 /// Q15541 --- 600960 ENSG00000119335 --- NM_003011 // SET translocation (myeloid leukemia-associated) 6334 // nucleosome assembly // predicted/computed /// 7048 // oncogenesis // experimental evidence /// 6260 // DNA replication // experimental evidence 5634 // nucleus // not recorded 3677 // DNA binding // extended:inferred from electronic annotation; NAP; 1.9e-94 /// 3687 // DNA replication factor // experimental evidence /// 4864 // protein phosphatase inhibitor // experimental evidence Inhibitor or repressor // experimental evidence /// DNA polymerase or subunit // experimental evidence DNA synthesis // experimental evidence DNA-associated (direct or indirect) // experimental evidence --- Nuclear // not recorded --- --- IPR002164 // Nucleosome assembly protein (NAP) NAP // Nucleosome assembly protein (NAP);1.9e-94 IPB000135 // High mobility group proteins HMG1 and HMG2;5.9e-08 --- --- --- "4506891 // SET translocation (myeloid leukemia-associated); SET gene; SET, translocation [Homo sapiens];e-161 /// 1711383 // SET protein (HLA-DR associated protein II) (PHAPII) (Phosphatase 2A inhibitor I2PP2A);e-160" Q9Z181 // Gene-TRE:SET SET (FRAGMENT). length=210;1e-115 /// FUC3_RAT // FUCTININ 3 (FUCOSYLTRANSFERASE INHIBITOR 3) (FRAGMENT). length=39;4e-15 /// SET_HUMAN // Gene:SET SET protein (HLA-DR associated protein II) (PHAPII) (Phosphatase 2A inhibitor I2PP2A). length=277;1e-162 /// Q9CY82 // Gene-TRE:SET Gene-TRE:5730420M11RIK 5730420M11RIK PROTEIN. length=277;1e-159 rc_AI171370_at RG-U34C // 92.13% ESTs Putative Ortholog /// 1372262_at RAE230A // 92.13% ESTs Putative Ortholog /// aa606818_s_at Mu11KsubA // SET translocation Curated Ortholog /// 98550_at MG-U74Av2 // SET translocation Curated Ortholog /// 1426854_a_at MOE430A // SET translocation Curated Ortholog /// 1421819_a_at MOE430A // SET translocation Curated Ortholog /// aa512369_s_at Mu11KsubA // SET translocation Curated Ortholog /// Msa.31117.0_s_at Mu11KsubB // SET translocation Curated Ortholog /// 94456_at MG-U74Av2 // SET translocation Curated Ortholog /// 161182_r_at MG-U74Av2 // SET translocation Curated Ortholog /// Msa.34562.0_f_at Mu11KsubB // SET translocation Curated Ortholog /// 1426853_at MOE430A // SET translocation Curated Ortholog /// Msa.35892.0_s_at Mu11KsubB // SET translocation Curated Ortholog chr9q34.11 // 123103479-123103948 // + // 95 Hs.145279 // 4 // NM_003011 // SET translocation (myeloid leukemia-associated) // chr9 // 123098389-123105196 // + 200631_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_003011.1 "gb:NM_003011.1 /DEF=Homo sapiens SET translocation (myeloid leukemia-associated) (SET), mRNA. /FEA=mRNA /GEN=SET /PROD=SET translocation (myeloid leukemia-associated) /DB_XREF=gi:4506890 /UG=Hs.145279 SET translocation (myeloid leukemia-associated) /FL=gb:U51924.1 gb:M93651.1 gb:NM_003011.1" g4506890 Hs.145279.0 "1500074415 (1 transcript, 1 gene cluster)" SET translocation (myeloid leukemia-associated) SET Chr:9q34 Hs.145279 6418 AAH32749 /// Q01105 /// Q15541 --- --- ENSG00000119335 --- NM_003011 // SET translocation (myeloid leukemia-associated) 6334 // nucleosome assembly // predicted/computed /// 7048 // oncogenesis // experimental evidence /// 6260 // DNA replication // experimental evidence 5634 // nucleus // not recorded 3677 // DNA binding // extended:inferred from electronic annotation; NAP; 1.9e-94 /// 3687 // DNA replication factor // experimental evidence /// 4864 // protein phosphatase inhibitor // experimental evidence Inhibitor or repressor // experimental evidence /// DNA polymerase or subunit // experimental evidence DNA synthesis // experimental evidence DNA-associated (direct or indirect) // experimental evidence --- Nuclear // not recorded --- --- IPR002164 // Nucleosome assembly protein (NAP) NAP // Nucleosome assembly protein (NAP);1.9e-94 IPB000135 // High mobility group proteins HMG1 and HMG2;5.9e-08 --- --- --- "4506891 // SET translocation (myeloid leukemia-associated); SET gene; SET, translocation [Homo sapiens];e-161 /// 1711383 // SET protein (HLA-DR associated protein II) (PHAPII) (Phosphatase 2A inhibitor I2PP2A);e-160" Q9CY82 // Gene-TRE:SET Gene-TRE:5730420M11RIK 5730420M11RIK PROTEIN. length=277;1e-158 /// FUC3_RAT // FUCTININ 3 (FUCOSYLTRANSFERASE INHIBITOR 3) (FRAGMENT). length=39;4e-15 /// Q9Z181 // Gene-TRE:SET SET (FRAGMENT). length=210;1e-114 /// SET_HUMAN // Gene:SET SET protein (HLA-DR associated protein II) (PHAPII) (Phosphatase 2A inhibitor I2PP2A). length=277;1e-161 rc_AI171370_at RG-U34C // 92.13% ESTs Putative Ortholog /// 1372262_at RAE230A // 92.13% ESTs Putative Ortholog /// aa606818_s_at Mu11KsubA // SET translocation Curated Ortholog /// 98550_at MG-U74Av2 // SET translocation Curated Ortholog /// 1426854_a_at MOE430A // SET translocation Curated Ortholog /// 1421819_a_at MOE430A // SET translocation Curated Ortholog /// aa512369_s_at Mu11KsubA // SET translocation Curated Ortholog /// Msa.31117.0_s_at Mu11KsubB // SET translocation Curated Ortholog /// 94456_at MG-U74Av2 // SET translocation Curated Ortholog /// 161182_r_at MG-U74Av2 // SET translocation Curated Ortholog /// Msa.34562.0_f_at Mu11KsubB // SET translocation Curated Ortholog /// 1426853_at MOE430A // SET translocation Curated Ortholog /// Msa.35892.0_s_at Mu11KsubB // SET translocation Curated Ortholog chr9q34.11 // 123104706-123105177 // + // 99 Hs.145279 // 2 // NM_003011 // SET translocation (myeloid leukemia-associated) // chr9 // 123098389-123105196 // + 200632_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_006096.1 "gb:NM_006096.1 /DEF=Homo sapiens N-myc downstream regulated (NDRG1), mRNA. /FEA=mRNA /GEN=NDRG1 /PROD=N-myc downstream regulated /DB_XREF=gi:5174656 /UG=Hs.75789 N-myc downstream regulated /FL=gb:BC003175.1 gb:D87953.1 gb:AF004162.1 gb:NM_006096.1" g5174656 Hs.75789.0 "1500074416 (3 transcripts, 1 gene cluster)" N-myc downstream regulated gene 1 NDRG1 Chr:8q24 Hs.75789 10397 Q8N959 /// Q92597 /// Q9BRH7 --- --- ENSG00000104419 --- NM_006096 // N-myc downstream regulated gene 1 9412 // response to heavy metal // experimental evidence /// 30154 // cell differentiation // extended:Unknown; Ndr; 1.1e-188 --- 8181 // tumor suppressor // predicted/computed --- --- --- --- Cytoplasmic // experimental evidence /// Basolateral plasma membrane // experimental evidence --- --- "IPR006162 // Phosphopantetheine attachment site /// IPR004142 // Ndr family /// IPR000379 // Esterase/lipase/thioesterase, active site" Ndr // Ndr family;1.1e-188 --- d1qo7a_ // c.69.1.11 // Bacterial epoxide hydrolase ;1.06e-10 --- EC:3.3.2.3 // HYES_HUMAN SOLUBLE EPOXIDE HYDROLASE (SEH) (EC 3.3.2.3) (EPOXIDE HYDRATASE) (CYTOSOLIC EPOXIDE HYDROLASE) (CEH).;4.07e-18 /// EC:3.8.1.5 // YM96_MYCTU PUTATIVE HALOALKANE DEHALOGENASE (EC 3.8.1.5).;8.31e-17 /// EC:1.13.12.5 // LUCI_RENRE RENILLA-LUCIFERIN 2-MONOOXYGENASE (EC 1.13.12.5) (RENILLA-TYPE LUCIFERASE).;2.11e-17 /// EC:3.1.1.24 // ELH2_ACICA 3-OXOADIPATE ENOL-LACTONASE II (EC 3.1.1.24) (ENOL-LACTONE HYDROLASE II) (BETA-KETOADIPATE ENOL-LACTONE HYDROLASE II).;6.49e-30 5174657 // N-myc downstream regulated gene 1; N-myc downstream regulated; differentiation-related gene 1 (nickel-specific induction protein) [Homo sapiens];0.0 /// 14748664 // similar to NDRG1 protein (N-myc downstream regulated gene 1 protein) (Differentiation-related gene 1 protein) (DRG1) (Reducing agents and tunicamycin-responsive protein) (RTP) (Nickel-specific induction protein Cap43) (Rit42) [Homo sapiens];0.0 Q9BQH5 // Gene-TRE:DKFZP761J1923 HYPOTHETICAL 40.8 KDA PROTEIN. length=371;1e-110 /// NDR1_HUMAN // SW:O15207 SW:Q9UK29 SW:Q9NYR6 Gene:NDRG1 Gene:RTP Gene:DRG1 Gene:CAP43 NDRG1 protein (N-myc downstream regulated gene 1 protein) (Differentiation-related gene 1 protein) (DRG1) (Reducing agents and tunicamycin-responsive protein) (RTP) (Nickel-specific induction protein Cap43) (Rit42). length=394;0 /// Q9GZM1 // Gene-TRE:SMAP-8 Gene-TRE:NDRG4 SMAP-8 (NDRG4-H) (NDRG4-B). length=371;1e-124 /// NDR2_HUMAN // SW:Q9ULH2 SW:Q9BQH5 SW:Q96PN0 SW:Q96JU0 SW:Q96FT0 SW:Q96FD3 Gene:NDRG2 Gene:SYLD Gene:KIAA1248 NDRG2 protein (Syld709613 protein). length=371;1e-110 /// Q8VBU2 // Gene-TRE:NDRG2 NDRG1 RELATED PROTEIN NDRG2B1 (NDRG1 RELATED PROTEIN NDRG2A1). length=371;1e-109 /// Q8VBW2 // Gene-TRE:NDRG2 NDRG1 RELATED PROTEIN NDRG2B2 (NDRG1 RELATED PROTEIN NDRG2A2). length=357;1e-109 /// Q8VI00 // ANTIDEPRESSANT-RELATED PROTEIN ADRG123 SPLICE VARIANT. length=357;1e-109 /// NDR2_MOUSE // Gene:NDRG2 Gene:NDR2 NDRG2 protein (Ndr2 protein). length=371;1e-108 /// NDR1_MOUSE // SW:P97862 Gene:NDRG1 Gene:NDR1 Gene:NDRL Gene:TDD5 NDRG1 protein (N-myc downstream regulated gene 1 protein) (Protein Ndr1). length=394;0 /// Q8VI01 // ANTIDEPRESSANT-RELATED PROTEIN ADRG123. length=371;1e-109 /// Q9BRH7 // SIMILAR TO N-MYC DOWNSTREAM REGULATED. length=109;1e-56 "1376925_at RAE230A // 88.15% ESTs, Highly similar to palmdelphin [Mus musculus] [M.musculus] Putative Ortholog /// 1382864_at RAE230A // 88.15% ESTs, Highly similar to palmdelphin [Mus musculus] [M.musculus] Putative Ortholog /// rc_AI231808_at RG-U34C // 88.15% ESTs, Highly similar to palmdelphin [Mus musculus] [M.musculus] Putative Ortholog /// 1376924_a_at RAE230A // 88.15% ESTs, Highly similar to palmdelphin [Mus musculus] [M.musculus] Putative Ortholog /// 96596_at MG-U74Av2 // N-myc downstream regulated 1 Curated Ortholog /// 1450977_s_at MOE430A // N-myc downstream regulated 1 Curated Ortholog /// 1431019_at MOE430B // RIKEN cDNA 2310058O11 gene Curated Ortholog /// 1450976_at MOE430A // N-myc downstream regulated 1 Curated Ortholog /// 160464_s_at MG-U74Av2 // N-myc downstream regulated 1 Curated Ortholog /// 1423413_at MOE430A // N-myc downstream regulated 1 Curated Ortholog /// 1456174_x_at MOE430A // N-myc downstream regulated 1 Curated Ortholog /// 1420760_s_at MOE430A // N-myc downstream regulated 1 Curated Ortholog" chr8q24.22 // 134337027-134337540 // - // 98 "Hs.381559 // 1 // AK026383 // Homo sapiens cDNA: FLJ22730 fis, clone HSI15793, highly similar to AF004162 Homo sapiens nickel-specific induction protein (Cap43) mRNA, mRNA sequence // chr8 // 134336971-134347722 // - /// Hs.75789 // 8 // NM_006096 // N-myc downstream regulated gene 1 // chr8 // 134336971-134397022 // -" 200633_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_018955.1 "gb:NM_018955.1 /DEF=Homo sapiens ubiquitin B (UBB), mRNA. /FEA=mRNA /GEN=UBB /PROD=ubiquitin B /DB_XREF=gi:11024713 /UG=Hs.183842 ubiquitin B /FL=gb:NM_018955.1 gb:BC000379.1" g11024713 Hs.183842.0 --- ubiquitin B UBB Chr:17p12-p11.2 Hs.356190 7314 Q9BWD6 --- --- ENSG00000170315 --- NM_018955 // ubiquitin B precursor 6464 // protein modification // experimental evidence --- 5551 // ubiquitin // experimental evidence Protein conjugation factor // not recorded --- --- --- --- --- --- IPR000626 // Ubiquitin domain ubiquitin // Ubiquitin family;7.4e-132 PR01475 // Parkin signature;1.2e-05 d1ubi__ // d.15.1.1 // Ubiquitin ;7.5e-33 --- --- 2707837 // polyubiquitin [Ovis aries];e-125 /// 11024714 // ubiquitin B precursor; polyubiquitin B [Homo sapiens];e-125 "Q9CXY4 // Gene-TRE:UBB UBIQUITIN B. length=305;1e-124 /// UBIQ_SOYBN // Ubiquitin. length=76;3e-35 /// Q9W418 // Gene-TRE:CG18282 CG18282 PROTEIN (FRAGMENT). length=231;1e-121 /// Q24576 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 UBIQUITIN (FRAGMENT). length=75;2e-34 /// Q24575 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 UBIQUITIN (FRAGMENT). length=76;9e-36 /// O64955 // Gene-TRE:SEN3 POLYUBIQUITIN (FRAGMENT). length=137;3e-68 /// Q8VCH1 // UBIQUITIN B. length=305;1e-125 /// Q9D1R5 // Gene-TRE:UBB 18 DAYS EMBRYO CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:1100001L13, FULL INSERT SEQUENCE. length=229;1e-125 /// Q24577 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 UBIQUITIN (FRAGMENT). length=76;2e-36 /// Q03919 // Gene-TRE:RUB1 Gene-TRE:YDR139C HYPOTHETICAL 8.7 KDA PROTEIN. length=77;3e-17 /// UBIQ_DROME // SW:Q9VQX7 SW:Q9VKW6 Gene:RPL40 Gene:CG2960 Gene:RPS27A Gene:UBI-F80 Gene:UBI-F Gene:CG5271) AND Gene:UBI-P63E Gene:UBI-M Gene:CG11624 Ubiquitin. length=76;5e-37 /// Q99348 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 POLYTENE PROTEIN 3 (FRAGMENT). length=75;1e-19 /// Q63446 // Gene-TRE:UBB POLYUBIQUITIN (UBIQUITIN B). length=305;1e-126 /// Q9BWD6 // UBIQUITIN B (HYPOTHETICAL 25.8 KDA PROTEIN) (UNKNOWN) (PROTEIN FOR MGC:16688). length=229;1e-126 /// Q63446 // Gene-TRE:UBB POLYUBIQUITIN (UBIQUITIN B). length=305;1e-125 /// Q9LYW1 // Gene-TRE:F15A17_270 POLYUBIQUITIN (UBQ3). length=306;1e-120 /// Q99349 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 POLYTENE PROTEIN 4 (FRAGMENT). length=76;2e-15 /// Q41965 // UBIQUITIN (FRAGMENT). length=68;1e-24 /// Q9ZRW9 // Gene-TRE:UBQ1 Gene-TRE:T32N4.13 Gene-TRE:AT4G05050 Gene-TRE:PPA0031 POLYUBIQUITIN (AT4G05050 PROTEIN) (PUTATIVE POLYUBIQUITIN) (AT4G05050/T32N4_13). length=229;1e-120 /// UBIQ_HUMAN // SW:P02249 SW:P02250 SW:Q29120 SW:Q91887 SW:Q91888 Gene:UBA52 Gene:UBCEP2 Gene:UBB Gene:UBC Gene:UBA80 Gene:UBCEP1 Gene:RPS27A Ubiquitin. length=76;2e-37 /// Q27927 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 UBIQUITIN (FRAGMENT). length=76;2e-36 /// Q41972 // UBIQUITIN (FRAGMENT). length=90;5e-35 /// Q63654 // Gene-TRE:UBC POLYUBIQUITIN (FRAGMENT). length=100;5e-51 /// Q96C32 // HYPOTHETICAL 34.3 KDA PROTEIN. length=305;1e-125 /// UBIQ_HUMAN // SW:P02249 SW:P02250 SW:Q29120 SW:Q91887 SW:Q91888 Gene:UBA52 Gene:UBCEP2 Gene:UBB Gene:UBC Gene:UBA80 Gene:UBCEP1 Gene:RPS27A Ubiquitin. length=76;9e-37 /// Q94B30 // UNKNOWN PROTEIN. length=229;1e-119 /// Q9UFQ0 // Gene-TRE:DKFZP434K0435 HYPOTHETICAL 26.9 KDA PROTEIN (FRAGMENT). length=239;1e-125 /// UBIQ_HUMAN // SW:P02249 SW:P02250 SW:Q29120 SW:Q91887 SW:Q91888 Gene:UBA52 Gene:UBCEP2 Gene:UBB Gene:UBC Gene:UBA80 Gene:UBCEP1 Gene:RPS27A Ubiquitin. length=76;5e-37 /// Q922B0 // UNKNOWN (PROTEIN FOR MGC:11492). length=202;1e-93 /// Q62317 // TRE:Q64223 Gene-TRE:UBC UBIQUITIN C (TI-225) (UBIQUITIN C) (POLYUBIQUITIN). length=126;7e-50 /// Q9S7H2 // Gene-TRE:SUBI-3 Gene-TRE:T5J8.21 Gene-TRE:SUBI-2 Gene-TRE:AT4G02890 UBIQUITIN (POLYUBIQUITIN). length=305;1e-120 /// Q93725 // Gene-TRE:F45H11.2 F45H11.2 PROTEIN. length=77;1e-21 /// Q99347 // Gene-TRE:UBI-P63E Gene-TRE:CG11624 POLYTENE PROTEIN 2 (FRAGMENT). length=76;2e-15 /// Q9CZM0 // Gene-TRE:UBB UBIQUITIN B. length=305;1e-125 /// O49976 // Gene-TRE:UBQ11 UBIQUITIN (FRAGMENT). length=304;1e-120 /// Q9SHE7 // T19E23.13. length=156;4e-64 /// UBIQ_CAEEL // Gene:UBQ-1 Gene:UBIA Gene:F25B5.4 Gene:UBQ-2 Gene:UBIB UBIQUITIN. length=76;4e-36 /// UBIQ_YEAST // Gene:UBI1 Gene:RPL40A Gene:YIL148W Gene:UBI2 Gene:RPL40B Gene:YKR094C) AND Gene:UBI3 Gene:RPS31 Gene:YLR167W Gene:L9470.14 Gene:UBI4 Gene:SCD2 Gene:YLL039C Ubiquitin. length=76;7e-36 /// Q42214 // UBIQUITIN (FRAGMENT). length=104;7e-47 /// O65381 // Gene-TRE:F12F1.15 F12F1.15 PROTEIN. length=78;8e-20" 101255_at MG-U74Av2 // ubiquitin B Curated Ortholog /// 1435643_x_at MOE430A // ubiquitin B Curated Ortholog /// X51703_s_at Mu11KsubB // ubiquitin B Curated Ortholog /// 1453723_x_at MOE430A // ubiquitin B Curated Ortholog /// 170343_at MG-U74Cv2 // ubiquitin B Curated Ortholog /// 1434822_at MOE430B // 91.52% RIKEN cDNA 1110063K05 gene Putative Ortholog /// 1449436_s_at MOE430A // ubiquitin B Curated Ortholog /// 113913_at MG-U74Bv2 // 91.52% RIKEN cDNA 1110063K05 gene Putative Ortholog chr17p11.2 // 17396206-17396655 // + // 99 Hs.356190 // 6 // NM_018955 // ubiquitin B // chr17 // 17395032-17396720 // + 200634_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_005022.1 "gb:NM_005022.1 /DEF=Homo sapiens profilin 1 (PFN1), mRNA. /FEA=mRNA /GEN=PFN1 /PROD=profilin 1 /DB_XREF=gi:4826897 /UG=Hs.75721 profilin 1 /FL=gb:BC002475.1 gb:J03191.1 gb:NM_005022.1" g4826897 Hs.75721.0 --- profilin 1 PFN1 Chr:17p13.3 Hs.75721 5216 P07737 --- --- ENSG00000108518 --- NM_005022 // profilin 1 --- --- 3779 // actin binding // extended:inferred from electronic annotation; profilin; 2.1e-60 /// 3785 // actin monomer binding // not recorded Regulatory subunit // not recorded Cell structure // predicted/computed --- --- --- G13_Signaling_Pathway --- IPR002097 // Profilin/allergen /// IPR005454 // Mammalian profilin profilin // Profilin;2.1e-60 IPB002097 // Profilin;4.8e-32 d1fil__ // d.110.1.1 // Profilin (actin-binding protein) ;1.38e-59 --- --- "1943532 // Chain A, Profilin Binds Proline-Rich Ligands In Two Distinct Amide Backbone Orientations;9e-77 /// 4826898 // profilin 1 [Homo sapiens];2e-77" Q9ES50 // PROFILIN II. length=140;2e-47 /// Q9HBK2 // Gene-TRE:PFN2 PROFILIN IIA (PROFILIN 2). length=140;4e-47 /// Q8WVF9 // SIMILAR TO PROFILIN II. length=140;2e-46 /// Q9ES47 // PROFILIN II. length=55;2e-13 /// PRO1_MOUSE // Gene:PFN1 Profilin I. length=139;3e-74 /// PRO2_RAT // SW:Q9JHU7 Gene:PFN2 Profilin IIa. length=139;5e-48 /// PRO2_MOUSE // SW:Q9ES50 SW:Q9ES49 Gene:PFN2 Profilin II. length=139;7e-47 /// PRO1_HUMAN // Gene:PFN1 Profilin I. length=139;4e-77 /// PRO2_HUMAN // SW:Q9HBK2 SW:Q8WVF9 Gene:PFN2 Profilin II. length=139;2e-46 /// PRO1_MOUSE // Gene:PFN1 Profilin I. length=139;9e-74 rc_AA817887_at RG-U34A // 90.76% profilin Putative Ortholog /// 1367605_at RAE230A // 90.76% profilin Putative Ortholog /// rc_AI235687_f_at RG-U34C // 90.76% profilin Putative Ortholog /// 96070_at MG-U74Av2 // profilin 1 Curated Ortholog /// Msa.2613.0_f_at Mu11KsubB // profilin 1 Curated Ortholog /// X14425_f_at Mu11KsubB // profilin 1 Curated Ortholog /// 1449018_at MOE430A // profilin 1 Curated Ortholog chr17p13.2 // 5187003-5189514 // - // 100 Hs.75721 // 6 // NM_005022 // profilin 1 // chr17 // 5186881-5189760 // - 200635_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AI762627 "Consensus includes gb:AU145351 /FEA=EST /DB_XREF=gi:11006872 /DB_XREF=est:AU145351 /CLONE=HEMBA1004591 /UG=Hs.75216 protein tyrosine phosphatase, receptor type, F /FL=gb:NM_002840.1" Hs.75216.0.S1 Hs.75216.0 "1500074417 (1 transcript, 1 gene cluster)" "protein tyrosine phosphatase, receptor type, F" PTPRF Chr:1p34 Hs.75216 5792 P10586 EC:3.1.3.48 --- ENSG00000142949 --- "NM_002840 // protein tyrosine phosphatase, receptor type, F isoform 1 precursor /// NM_130440 // protein tyrosine phosphatase, receptor type, F isoform 2 precursor" 7185 // transmembrane receptor protein tyrosine phosphatase signaling pathway // experimental evidence /// 7155 // cell adhesion // predicted/computed 5887 // integral to plasma membrane // predicted/computed 5001 // transmembrane receptor protein tyrosine phosphatase // experimental evidence /// 4725 // protein tyrosine phosphatase // predicted/computed --- --- Integral membrane // predicted/computed --- --- --- --- "IPR001005 // Myb DNA-binding domain /// IPR000387 // Tyrosine specific protein phosphatase and dual specificity protein phosphatase /// IPR000242 // Tyrosine specific protein phosphatase /// IPR003961 // Fibronectin, type III /// IPR003962 // Fibronectin, type III repeat /// IPR003598 // Immunoglobulin C-2 type /// IPR003006 // Immunoglobulin/major histocompatibility complex" ig // Immunoglobulin domain;1.3e-21 /// Y_phosphatase // Protein-tyrosine phosphatase;2.2e-256 /// fn3 // Fibronectin type III domain;4e-132 /// fn3 // Fibronectin type III domain;3.8e-130 IPB000387 // Tyrosine specific protein phosphatase and dual specificity protein phosphatase family;4.7e-06 d1epfa1 // b.1.1.4 // Neural cell adhesion molecule (NCAM) ;7.61e-19 /// d1epfa1 // b.1.1.4 // Neural cell adhesion molecule (NCAM) ;7.6e-19 /// d1lara1 // c.45.1.2 // RPTP Lar ;5.16e-113 numtm:1;Nin-prob:0.00370;type:tm; --- "18860896 // protein tyrosine phosphatase, receptor type, F, isoform 2 precursor; protein tyrosine phosphatase, receptor type, F polypeptide; receptor-linked protein-tyrosine phosphatase LAR; Leukocyte antigen-related tyrosine phosphatase; LCA-homolog [Homo sapiens];0.0 /// 4506311 // protein tyrosine phosphatase, receptor type, F, isoform 1 precursor; protein tyrosine phosphatase, receptor type, F polypeptide; receptor-linked protein-tyrosine phosphatase LAR; Leukocyte antigen-related tyrosine phosphatase; LCA-homolog [Homo sapiens];0.0" "Q9EQ17 // Gene-TRE:PTPRF TYROSINE PHOSPHATASE LAR. length=1898;0 /// Q64696 // Gene-TRE:PTPRF Gene-TRE:LAR PROTEIN-TYROSINE PHOSPHATASE, RECEPTOR-TYPE, F POLYPEPTIDE (EC 3.1.3.48) (LAR PROTEIN) (LEUKOCYTE ANTIGEN RELATED) (FRAGMENT). length=582;0 /// PTPF_HUMAN // Gene:PTPRF Gene:LAR LAR protein precursor (Leukocyte antigen related) (EC 3.1.3.48). length=1897;0 /// Q64487 // TRE:Q64486 TRE:Q64488 TRE:Q64495 Gene-TRE:PTPRD PROTEIN-TYROSINE PHOSPHATASE, RECEPTOR-TYPE, D PRECURSOR (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE DELTA) (R-PTP-DELTA). length=1894;0 /// Q9UM81 // Gene-TRE:PTPSIGMA PTPSIGMA-(BRAIN) PRECURSOR. length=1502;0 /// Q90YJ4 // Gene-TRE:RPTPSIGMA RECEPTOR PROTEIN-TYROSINE PHOSPHATASE SIGMA (FRAGMENT). length=857;0 /// Q64699 // TRE:Q64503 Gene-TRE:PTPRS PROTEIN-TYROSINE PHOSPHATASE, RECEPTOR-TYPE, S PRECURSOR (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE SIGMA) (RPTP-SIGMA) (PROTEIN TYROSINE PHOSPHATASE PTPT9) (PTPASE NU-3). length=1904;0 /// Q64604 // TRE:Q63294 TRE:Q63295 TRE:Q63296 Gene-TRE:LAR PROTEIN-TYROSINE PHOSPHATASE, RECEPTOR-TYPE, F POLYPEPTIDE PRECURSOR (EC 3.1.3.48) (LAR PROTEIN) (LEUKOCYTE ANTIGEN RELATED) (LEUKOCYTE COMMON ANTIGEN-RELATED PHOSPHATASE) (PROTEIN-TYROSINE-PHOSPHATASE) (PHOSPHOTYROSINE PHOSPHATASE) (PTPASE). length=1898;0 /// Q90YJ5 // Gene-TRE:LAR RECEPTOR PROTEIN-TYROSINE PHOSPHATASE LAR (FRAGMENT). length=508;0 /// Q62917 // LAR RECEPTOR-LINKED TYROSINE PHOSPHATASE. length=460;0 /// Q62604 // Gene-TRE:CPTP1 HYPOTHETICAL 45.6 KDA PROTEIN (FRAGMENT). length=398;0 /// O75870 // PTPSIGMA (FRAGMENT). length=1399;0 /// Q64605 // TRE:Q64675 TRE:Q07808 TRE:Q64621 Gene-TRE:LAR-PTP2 LEUKOCYTE COMMON ANTIGEN-RELATED PHOSPHATASE PTP2 PRECURSOR (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE LAR-PTP2) (PHOSPHOTYROSINE PHOSPHATASE LAR-PTP2) (PTPASE LAR-PTP2) (PTP NE-3) (PTP-P1) (CPTP1) (PTP-SIGMA). length=1863;0" "1371086_at RAE230A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// M60103_at RG-U34A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// 1368036_at RAE230A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// X83546_at RG-U34A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// 1387081_at RAE230A // 84.33% reticulocalbin 2 Putative Ortholog /// 1368035_a_at RAE230A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// U15734_at RG-U34A // 84.33% reticulocalbin 2 Putative Ortholog /// Msa.16718.0_s_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// 1420841_at MOE430A // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// Msa.43192.0_g_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// Msa.43192.0_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// Msa.11743.0_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// Msa.23615.0_s_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog" chr1p34.2 // 43088483-43088921 // + // 100 "Hs.75216 // 1 // BC029466 // protein tyrosine phosphatase, receptor type, F // chr1 // 43086653-43088998 // +" 200636_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_002840.1 "gb:NM_002840.1 /DEF=Homo sapiens protein tyrosine phosphatase, receptor type, F (PTPRF), mRNA. /FEA=mRNA /GEN=PTPRF /PROD=protein tyrosine phosphatase, receptor type, fpolypeptide /DB_XREF=gi:4506310 /UG=Hs.75216 protein tyrosine phosphatase, receptor type, F /FL=gb:NM_002840.1" g4506310 Hs.75216.0 "1500074418 (1 transcript, 1 gene cluster)" "protein tyrosine phosphatase, receptor type, F" PTPRF Chr:1p34 Hs.75216 5792 P10586 EC:3.1.3.48 --- ENSG00000142949 --- "NM_002840 // protein tyrosine phosphatase, receptor type, F isoform 1 precursor /// NM_130440 // protein tyrosine phosphatase, receptor type, F isoform 2 precursor" 7185 // transmembrane receptor protein tyrosine phosphatase signaling pathway // experimental evidence /// 7155 // cell adhesion // predicted/computed 5887 // integral to plasma membrane // predicted/computed 5001 // transmembrane receptor protein tyrosine phosphatase // experimental evidence /// 4725 // protein tyrosine phosphatase // predicted/computed --- --- Integral membrane // predicted/computed --- --- --- --- "IPR001005 // Myb DNA-binding domain /// IPR000387 // Tyrosine specific protein phosphatase and dual specificity protein phosphatase /// IPR000242 // Tyrosine specific protein phosphatase /// IPR003961 // Fibronectin, type III /// IPR003962 // Fibronectin, type III repeat /// IPR003598 // Immunoglobulin C-2 type /// IPR003006 // Immunoglobulin/major histocompatibility complex" ig // Immunoglobulin domain;1.3e-21 /// Y_phosphatase // Protein-tyrosine phosphatase;2.2e-256 /// fn3 // Fibronectin type III domain;4e-132 /// fn3 // Fibronectin type III domain;3.8e-130 IPB000387 // Tyrosine specific protein phosphatase and dual specificity protein phosphatase family;4.7e-06 d1epfa1 // b.1.1.4 // Neural cell adhesion molecule (NCAM) ;7.61e-19 /// d1epfa1 // b.1.1.4 // Neural cell adhesion molecule (NCAM) ;7.6e-19 /// d1lara1 // c.45.1.2 // RPTP Lar ;5.16e-113 numtm:1;Nin-prob:0.00370;type:tm; --- "18860896 // protein tyrosine phosphatase, receptor type, F, isoform 2 precursor; protein tyrosine phosphatase, receptor type, F polypeptide; receptor-linked protein-tyrosine phosphatase LAR; Leukocyte antigen-related tyrosine phosphatase; LCA-homolog [Homo sapiens];0.0 /// 4506311 // protein tyrosine phosphatase, receptor type, F, isoform 1 precursor; protein tyrosine phosphatase, receptor type, F polypeptide; receptor-linked protein-tyrosine phosphatase LAR; Leukocyte antigen-related tyrosine phosphatase; LCA-homolog [Homo sapiens];0.0" "Q13332 // TRE:Q15718 TRE:Q16341 Gene-TRE:PTPRS PROTEIN-TYROSINE PHOSPHATASE, RECEPTOR-TYPE, S PRECURSOR (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE SIGMA) (R-PTP-SIGMA) (PTPRS). length=1948;0 /// Q9EQ17 // Gene-TRE:PTPRF TYROSINE PHOSPHATASE LAR. length=1898;0 /// Q64696 // Gene-TRE:PTPRF Gene-TRE:LAR PROTEIN-TYROSINE PHOSPHATASE, RECEPTOR-TYPE, F POLYPEPTIDE (EC 3.1.3.48) (LAR PROTEIN) (LEUKOCYTE ANTIGEN RELATED) (FRAGMENT). length=582;0 /// PTPF_HUMAN // Gene:PTPRF Gene:LAR LAR protein precursor (Leukocyte antigen related) (EC 3.1.3.48). length=1897;0 /// Q64487 // TRE:Q64486 TRE:Q64488 TRE:Q64495 Gene-TRE:PTPRD PROTEIN-TYROSINE PHOSPHATASE, RECEPTOR-TYPE, D PRECURSOR (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE DELTA) (R-PTP-DELTA). length=1894;0 /// Q9UM81 // Gene-TRE:PTPSIGMA PTPSIGMA-(BRAIN) PRECURSOR. length=1502;0 /// Q90YJ4 // Gene-TRE:RPTPSIGMA RECEPTOR PROTEIN-TYROSINE PHOSPHATASE SIGMA (FRAGMENT). length=857;0 /// Q64699 // TRE:Q64503 Gene-TRE:PTPRS PROTEIN-TYROSINE PHOSPHATASE, RECEPTOR-TYPE, S PRECURSOR (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE SIGMA) (RPTP-SIGMA) (PROTEIN TYROSINE PHOSPHATASE PTPT9) (PTPASE NU-3). length=1904;0 /// Q64604 // TRE:Q63294 TRE:Q63295 TRE:Q63296 Gene-TRE:LAR PROTEIN-TYROSINE PHOSPHATASE, RECEPTOR-TYPE, F POLYPEPTIDE PRECURSOR (EC 3.1.3.48) (LAR PROTEIN) (LEUKOCYTE ANTIGEN RELATED) (LEUKOCYTE COMMON ANTIGEN-RELATED PHOSPHATASE) (PROTEIN-TYROSINE-PHOSPHATASE) (PHOSPHOTYROSINE PHOSPHATASE) (PTPASE). length=1898;0 /// Q90YJ5 // Gene-TRE:LAR RECEPTOR PROTEIN-TYROSINE PHOSPHATASE LAR (FRAGMENT). length=508;0 /// Q62917 // LAR RECEPTOR-LINKED TYROSINE PHOSPHATASE. length=460;0 /// Q62604 // Gene-TRE:CPTP1 HYPOTHETICAL 45.6 KDA PROTEIN (FRAGMENT). length=398;0 /// O75870 // PTPSIGMA (FRAGMENT). length=1399;0 /// Q64605 // TRE:Q64675 TRE:Q07808 TRE:Q64621 Gene-TRE:LAR-PTP2 LEUKOCYTE COMMON ANTIGEN-RELATED PHOSPHATASE PTP2 PRECURSOR (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE LAR-PTP2) (PHOSPHOTYROSINE PHOSPHATASE LAR-PTP2) (PTPASE LAR-PTP2) (PTP NE-3) (PTP-P1) (CPTP1) (PTP-SIGMA). length=1863;0" "1371086_at RAE230A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// M60103_at RG-U34A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// 1368036_at RAE230A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// X83546_at RG-U34A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// 1387081_at RAE230A // 84.33% reticulocalbin 2 Putative Ortholog /// 1368035_a_at RAE230A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// U15734_at RG-U34A // 84.33% reticulocalbin 2 Putative Ortholog /// Msa.16718.0_s_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// 1420841_at MOE430A // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// Msa.43192.0_g_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// Msa.43192.0_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// Msa.11743.0_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// Msa.23615.0_s_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog" chr1p34.2 // 43089326-43089704 // + // 100 "Hs.75216 // 3 // NM_002840 // protein tyrosine phosphatase, receptor type, F // chr1 // 42996982-43089773 // + /// Hs.75216 // 3 // NM_130440 // protein tyrosine phosphatase, receptor type, F // chr1 // 42996982-43089773 // +" 200637_s_at HG-U133A Homo sapiens 1-Mar-03 Consensus GenBank AI762627 "Consensus includes gb:AI762627 /FEA=EST /DB_XREF=gi:5178294 /DB_XREF=est:wi56g01.x1 /CLONE=IMAGE:2394288 /UG=Hs.75216 protein tyrosine phosphatase, receptor type, F /FL=gb:NM_002840.1" Hs.75216.0.S1 Hs.75216.0 "1500074419 (1 transcript, 1 gene cluster)" "protein tyrosine phosphatase, receptor type, F" PTPRF Chr:1p34 Hs.75216 5792 P10586 EC:3.1.3.48 179590 ENSG00000142949 --- "NM_002840 // protein tyrosine phosphatase, receptor type, F isoform 1 precursor /// NM_130440 // protein tyrosine phosphatase, receptor type, F isoform 2 precursor" 7185 // transmembrane receptor protein tyrosine phosphatase signaling pathway // experimental evidence /// 7155 // cell adhesion // predicted/computed 5887 // integral to plasma membrane // predicted/computed 5001 // transmembrane receptor protein tyrosine phosphatase // experimental evidence /// 4725 // protein tyrosine phosphatase // predicted/computed --- --- Integral membrane // predicted/computed --- --- --- --- "IPR001005 // Myb DNA-binding domain /// IPR000387 // Tyrosine specific protein phosphatase and dual specificity protein phosphatase /// IPR000242 // Tyrosine specific protein phosphatase /// IPR003961 // Fibronectin, type III /// IPR003962 // Fibronectin, type III repeat /// IPR003598 // Immunoglobulin C-2 type /// IPR003006 // Immunoglobulin/major histocompatibility complex" ig // Immunoglobulin domain;1.3e-21 /// Y_phosphatase // Protein-tyrosine phosphatase;2.2e-256 /// fn3 // Fibronectin type III domain;4e-132 /// fn3 // Fibronectin type III domain;3.8e-130 IPB000387 // Tyrosine specific protein phosphatase and dual specificity protein phosphatase family;4.7e-06 d1epfa1 // b.1.1.4 // Neural cell adhesion molecule (NCAM) ;7.61e-19 /// d1epfa1 // b.1.1.4 // Neural cell adhesion molecule (NCAM) ;7.6e-19 /// d1lara1 // c.45.1.2 // RPTP Lar ;5.16e-113 numtm:1;Nin-prob:0.00370;type:tm; --- "18860896 // protein tyrosine phosphatase, receptor type, F, isoform 2 precursor; protein tyrosine phosphatase, receptor type, F polypeptide; receptor-linked protein-tyrosine phosphatase LAR; Leukocyte antigen-related tyrosine phosphatase; LCA-homolog [Homo sapiens];0.0 /// 4506311 // protein tyrosine phosphatase, receptor type, F, isoform 1 precursor; protein tyrosine phosphatase, receptor type, F polypeptide; receptor-linked protein-tyrosine phosphatase LAR; Leukocyte antigen-related tyrosine phosphatase; LCA-homolog [Homo sapiens];0.0" "Q9EQ17 // Gene-TRE:PTPRF TYROSINE PHOSPHATASE LAR. length=1898;0 /// Q64696 // Gene-TRE:PTPRF Gene-TRE:LAR PROTEIN-TYROSINE PHOSPHATASE, RECEPTOR-TYPE, F POLYPEPTIDE (EC 3.1.3.48) (LAR PROTEIN) (LEUKOCYTE ANTIGEN RELATED) (FRAGMENT). length=582;0 /// PTPF_HUMAN // Gene:PTPRF Gene:LAR LAR protein precursor (Leukocyte antigen related) (EC 3.1.3.48). length=1897;0 /// Q64487 // TRE:Q64486 TRE:Q64488 TRE:Q64495 Gene-TRE:PTPRD PROTEIN-TYROSINE PHOSPHATASE, RECEPTOR-TYPE, D PRECURSOR (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE DELTA) (R-PTP-DELTA). length=1894;0 /// Q9UM81 // Gene-TRE:PTPSIGMA PTPSIGMA-(BRAIN) PRECURSOR. length=1502;0 /// Q90YJ4 // Gene-TRE:RPTPSIGMA RECEPTOR PROTEIN-TYROSINE PHOSPHATASE SIGMA (FRAGMENT). length=857;0 /// Q64699 // TRE:Q64503 Gene-TRE:PTPRS PROTEIN-TYROSINE PHOSPHATASE, RECEPTOR-TYPE, S PRECURSOR (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE SIGMA) (RPTP-SIGMA) (PROTEIN TYROSINE PHOSPHATASE PTPT9) (PTPASE NU-3). length=1904;0 /// Q64604 // TRE:Q63294 TRE:Q63295 TRE:Q63296 Gene-TRE:LAR PROTEIN-TYROSINE PHOSPHATASE, RECEPTOR-TYPE, F POLYPEPTIDE PRECURSOR (EC 3.1.3.48) (LAR PROTEIN) (LEUKOCYTE ANTIGEN RELATED) (LEUKOCYTE COMMON ANTIGEN-RELATED PHOSPHATASE) (PROTEIN-TYROSINE-PHOSPHATASE) (PHOSPHOTYROSINE PHOSPHATASE) (PTPASE). length=1898;0 /// Q90YJ5 // Gene-TRE:LAR RECEPTOR PROTEIN-TYROSINE PHOSPHATASE LAR (FRAGMENT). length=508;0 /// Q62917 // LAR RECEPTOR-LINKED TYROSINE PHOSPHATASE. length=460;0 /// Q62604 // Gene-TRE:CPTP1 HYPOTHETICAL 45.6 KDA PROTEIN (FRAGMENT). length=398;0 /// O75870 // PTPSIGMA (FRAGMENT). length=1399;0 /// Q64605 // TRE:Q64675 TRE:Q07808 TRE:Q64621 Gene-TRE:LAR-PTP2 LEUKOCYTE COMMON ANTIGEN-RELATED PHOSPHATASE PTP2 PRECURSOR (EC 3.1.3.48) (PROTEIN-TYROSINE PHOSPHATASE LAR-PTP2) (PHOSPHOTYROSINE PHOSPHATASE LAR-PTP2) (PTPASE LAR-PTP2) (PTP NE-3) (PTP-P1) (CPTP1) (PTP-SIGMA). length=1863;0" "1371086_at RAE230A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// M60103_at RG-U34A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// 1368036_at RAE230A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// X83546_at RG-U34A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// 1387081_at RAE230A // 84.33% reticulocalbin 2 Putative Ortholog /// 1368035_a_at RAE230A // 84.33% protein tyrosine phosphatase, receptor type, F Putative Ortholog /// U15734_at RG-U34A // 84.33% reticulocalbin 2 Putative Ortholog /// Msa.16718.0_s_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// 1420841_at MOE430A // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// Msa.43192.0_g_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// Msa.43192.0_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// Msa.11743.0_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog /// Msa.23615.0_s_at Mu11KsubB // protein tyrosine phosphatase, receptor type, F Curated Ortholog" chr1p34.2 // 43087066-43088413 // + // 99 "Hs.75216 // 4 // NM_002840 // protein tyrosine phosphatase, receptor type, F // chr1 // 42996982-43089773 // + /// Hs.75216 // 4 // NM_130440 // protein tyrosine phosphatase, receptor type, F // chr1 // 42996982-43089773 // +" 200638_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar GenBank BC003623.1 "gb:BC003623.1 /DEF=Homo sapiens, tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide, clone MGC:2153, mRNA, complete cds. /FEA=mRNA /PROD=tyrosine 3-monooxygenasetryptophan5-monooxygenase activation protein, zeta polypeptide /DB_XREF=gi:13177678 /UG=Hs.75103 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide /FL=gb:BC003623.1 gb:M86400.1 gb:NM_003406.1 gb:U28964.1" g13177678 Hs.75103.0 "1500074420 (1 transcript, 1 gene cluster)" "tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide" YWHAZ Chr:8q23.1 Hs.75103 7534 AAD14300 /// P29312 EC:3.1.1.4 --- --- --- "NM_003406 // tyrosine 3/tryptophan 5 -monooxygenase activation protein, zeta polypeptide /// NM_145690 // tyrosine 3/tryptophan 5 -monooxygenase activation protein, zeta polypeptide" --- --- 5515 // protein binding // experimental evidence /// 19904 // protein domain specific binding // extended:Unknown; 14-3-3; 2.3e-150 Regulatory subunit // not recorded --- --- --- --- --- MAP00561 // Glycerolipid metabolism /// MAP00580 // Phospholipid degradation /// MAP00590 // Prostaglandin and leukotriene metabolism IPR000308 // 14-3-3 protein 14-3-3 // 14-3-3 protein;2.3e-150 IPB000308 // 14-3-3 proteins;9.2e-153 d1qjba_ // a.118.7.1 // zeta isoform ;3.78e-114 --- --- "4507953 // tyrosine 3/tryptophan 5 -monooxygenase activation protein, zeta polypeptide; protein kinase C inhibitor protein-1; phospholipase A2 [Homo sapiens];e-134 /// 6756041 // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide; DNA segment, Chr 14, Abbott 1 expressed [Mus musculus];e-134" "Q9UP48 // 14.3.3 PROTEIN (FRAGMENT). length=173;3e-74 /// 143F_MOUSE // SW:P70198 Gene:YWHAH 14-3-3 protein eta (Protein kinase C inhibitor protein-1) (KCIP-1). length=245;1e-97 /// 143G_HUMAN // SW:Q9UN99 SW:Q9UDP2 SW:O70457 Gene:YWHAG 14-3-3 protein gamma (Protein kinase C inhibitor protein-1) (KCIP-1). length=246;3e-98 /// 143Z_DROME // SW:O01665 SW:Q9V5G6 Gene:14-3-3-ZETA Gene:14-3-3EZ Gene:LEO Gene:14-3-3 Gene:THAP Gene:CG17870 14-3-3-like protein (Leonardo protein) (14-3-3 zeta). length=248;1e-111 /// Q9I7C7 // Gene-TRE:14-3-3-ZETA Gene-TRE:CG17870 14-3-3-ZETA PROTEIN. length=261;1e-109 /// Q9UDP2 // MATCH TO 14-3-3GAMMA (FRAGMENT). length=218;9e-85 /// 143Z_MOUSE // SW:P70197 SW:P97286 Gene:YWHAZ 14-3-3 PROTEIN ZETA/DELTA (PROTEIN KINASE C INHIBITOR PROTEIN-1) (KCIP-1) (MITOCHONDRIAL IMPORT STIMULATION FACTOR S1 SUBUNIT). length=245;1e-135 /// 143F_HUMAN // Gene:YWHAH Gene:YWHA1 14-3-3 protein eta (Protein AS1). length=245;6e-98 /// 143G_HUMAN // SW:Q9UN99 SW:Q9UDP2 SW:O70457 Gene:YWHAG 14-3-3 protein gamma (Protein kinase C inhibitor protein-1) (KCIP-1). length=246;2e-97 /// 143B_ARATH // Gene:GRF11 Gene:AT1G34760 Gene:F21H2.3 14-3-3-like protein GF14 omicron (General regulatory factor 11). length=241;9e-78 /// O70457 // Gene-TRE:YWHAG 14-3-3 PROTEIN GAMMA. length=247;3e-97 /// O70455 // Gene-TRE:YWHAB 14-3-3 PROTEIN BETA. length=246;1e-116 /// 143T_MOUSE // Gene:YWHAQ 14-3-3 PROTEIN TAU (14-3-3 PROTEIN THETA). length=245;1e-111 /// 143T_MOUSE // Gene:YWHAQ 14-3-3 PROTEIN TAU (14-3-3 PROTEIN THETA). length=245;1e-110 /// 143B_HUMAN // Gene:YWHAB 14-3-3 protein beta/alpha (Protein kinase C inhibitor protein-1) (KCIP-1) (Protein 1054). length=245;1e-118 /// 143Z_HUMAN // SW:P29213 Gene:YWHAZ 14-3-3 protein zeta/delta (Protein kinase C inhibitor protein-1) (KCIP-1) (Factor activating exoenzyme S) (FAS). length=245;1e-135 /// Q42083 // GF14 PROTEIN (FRAGMENT). length=79;2e-15 /// 143T_HUMAN // Gene:YWHAQ 14-3-3 protein tau (14-3-3 protein theta) (14-3-3 protein T-cell) (HS1 protein). length=245;1e-111 /// Q99L51 // SIMILAR TO TYROSINE 3-MONOOXYGENASE/TRYPTOPHAN 5-MONOOXYGENASE ACTIVATION PROTEIN, THETA POLYPEPTIDE (FRAGMENT). length=197;3e-85 /// 143G_HUMAN // SW:Q9UN99 SW:Q9UDP2 SW:O70457 Gene:YWHAG 14-3-3 protein gamma (Protein kinase C inhibitor protein-1) (KCIP-1). length=246;9e-98 /// Q9H4N8 // CLONE CDABP0046 MRNA SEQUENCE. length=176;5e-68 /// 143F_MOUSE // SW:P70198 Gene:YWHAH 14-3-3 protein eta (Protein kinase C inhibitor protein-1) (KCIP-1). length=245;4e-98 /// 143B_MOUSE // SW:O70455 Gene:YWHAB 14-3-3 protein beta/alpha (Protein kinase C inhibitor protein-1) (KCIP-1). length=245;1e-117 /// 143B_RAT // Gene:YWHAB 14-3-3 protein beta/alpha (Protein kinase C inhibitor protein-1) (KCIP-1) (Prepronerve growth factor RNH-1). length=245;1e-117" "J04532_at RN-U34 // protein kinase C, zeta Curated Ortholog /// rc_AI180424_at RG-U34A // 91.12% Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Putative Ortholog /// 1370197_a_at RAE230A // protein kinase C, zeta Curated Ortholog /// 1372249_at RAE230A // 91.12% Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Putative Ortholog /// rc_AA926328_g_at RG-U34B // 91.12% Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Putative Ortholog /// rc_AA926328_at RG-U34B // 91.12% Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Putative Ortholog /// rc_AI176209_at RG-U34C // 91.12% Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Putative Ortholog /// J04532_at RG-U34A // protein kinase C, zeta Curated Ortholog /// 1387774_at RAE230A // 91.12% Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Putative Ortholog /// Msa.14909.0_f_at Mu11KsubB // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// 1439005_x_at MOE430A // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// 1436981_a_at MOE430A // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// 1416102_at MOE430A // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// 1448218_s_at MOE430A // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// Msa.41232.0_f_at Mu11KsubB // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// d78647_s_at Mu11KsubA // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// 97544_at MG-U74Av2 // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// 1448219_a_at MOE430A // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog" --- --- 200639_s_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_003406.1 "gb:NM_003406.1 /DEF=Homo sapiens tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide (YWHAZ), mRNA. /FEA=mRNA /GEN=YWHAZ /PROD=tyrosine 3-monooxygenasetryptophan5-monooxygenase activation protein, zeta polypeptide /DB_XREF=gi:4507952 /UG=Hs.75103 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide /FL=gb:BC003623.1 gb:M86400.1 gb:NM_003406.1 gb:U28964.1" g4507952 Hs.75103.0 "1500074421 (2 transcripts, 1 gene cluster)" "tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide" YWHAZ Chr:8q23.1 Hs.75103 7534 AAD14300 /// P29312 EC:3.1.1.4 --- --- --- "NM_003406 // tyrosine 3/tryptophan 5 -monooxygenase activation protein, zeta polypeptide /// NM_145690 // tyrosine 3/tryptophan 5 -monooxygenase activation protein, zeta polypeptide" --- --- 5515 // protein binding // experimental evidence /// 19904 // protein domain specific binding // extended:Unknown; 14-3-3; 2.3e-150 Regulatory subunit // not recorded --- --- --- --- --- MAP00561 // Glycerolipid metabolism /// MAP00580 // Phospholipid degradation /// MAP00590 // Prostaglandin and leukotriene metabolism IPR000308 // 14-3-3 protein 14-3-3 // 14-3-3 protein;2.3e-150 IPB000308 // 14-3-3 proteins;9.2e-153 d1qjba_ // a.118.7.1 // zeta isoform ;3.78e-114 --- --- "4507953 // tyrosine 3/tryptophan 5 -monooxygenase activation protein, zeta polypeptide; protein kinase C inhibitor protein-1; phospholipase A2 [Homo sapiens];e-134 /// 6756041 // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide; DNA segment, Chr 14, Abbott 1 expressed [Mus musculus];e-134" "143B_RAT // Gene:YWHAB 14-3-3 protein beta/alpha (Protein kinase C inhibitor protein-1) (KCIP-1) (Prepronerve growth factor RNH-1). length=245;1e-116 /// Q9UDP2 // MATCH TO 14-3-3GAMMA (FRAGMENT). length=218;2e-84 /// 143G_HUMAN // SW:Q9UN99 SW:Q9UDP2 SW:O70457 Gene:YWHAG 14-3-3 protein gamma (Protein kinase C inhibitor protein-1) (KCIP-1). length=246;3e-97 /// 143Z_DROME // SW:O01665 SW:Q9V5G6 Gene:14-3-3-ZETA Gene:14-3-3EZ Gene:LEO Gene:14-3-3 Gene:THAP Gene:CG17870 14-3-3-like protein (Leonardo protein) (14-3-3 zeta). length=248;1e-111 /// Q9I7C7 // Gene-TRE:14-3-3-ZETA Gene-TRE:CG17870 14-3-3-ZETA PROTEIN. length=261;1e-108 /// 143G_HUMAN // SW:Q9UN99 SW:Q9UDP2 SW:O70457 Gene:YWHAG 14-3-3 protein gamma (Protein kinase C inhibitor protein-1) (KCIP-1). length=246;5e-98 /// 143F_HUMAN // Gene:YWHAH Gene:YWHA1 14-3-3 protein eta (Protein AS1). length=245;9e-98 /// 143Z_MOUSE // SW:P70197 SW:P97286 Gene:YWHAZ 14-3-3 PROTEIN ZETA/DELTA (PROTEIN KINASE C INHIBITOR PROTEIN-1) (KCIP-1) (MITOCHONDRIAL IMPORT STIMULATION FACTOR S1 SUBUNIT). length=245;1e-135 /// O70455 // Gene-TRE:YWHAB 14-3-3 PROTEIN BETA. length=246;1e-116 /// 143T_MOUSE // Gene:YWHAQ 14-3-3 PROTEIN TAU (14-3-3 PROTEIN THETA). length=245;1e-111 /// 143T_MOUSE // Gene:YWHAQ 14-3-3 PROTEIN TAU (14-3-3 PROTEIN THETA). length=245;1e-110 /// 143B_ARATH // Gene:GRF11 Gene:AT1G34760 Gene:F21H2.3 14-3-3-like protein GF14 omicron (General regulatory factor 11). length=241;1e-77 /// 143B_HUMAN // Gene:YWHAB 14-3-3 protein beta/alpha (Protein kinase C inhibitor protein-1) (KCIP-1) (Protein 1054). length=245;1e-117 /// 143Z_HUMAN // SW:P29213 Gene:YWHAZ 14-3-3 protein zeta/delta (Protein kinase C inhibitor protein-1) (KCIP-1) (Factor activating exoenzyme S) (FAS). length=245;1e-135 /// Q9UP48 // 14.3.3 PROTEIN (FRAGMENT). length=173;4e-74 /// 143F_MOUSE // SW:P70198 Gene:YWHAH 14-3-3 protein eta (Protein kinase C inhibitor protein-1) (KCIP-1). length=245;2e-97 /// Q9H4N8 // CLONE CDABP0046 MRNA SEQUENCE. length=176;8e-68 /// 143T_HUMAN // Gene:YWHAQ 14-3-3 protein tau (14-3-3 protein theta) (14-3-3 protein T-cell) (HS1 protein). length=245;1e-110 /// 143F_MOUSE // SW:P70198 Gene:YWHAH 14-3-3 protein eta (Protein kinase C inhibitor protein-1) (KCIP-1). length=245;7e-98 /// O70457 // Gene-TRE:YWHAG 14-3-3 PROTEIN GAMMA. length=247;5e-97 /// 143G_HUMAN // SW:Q9UN99 SW:Q9UDP2 SW:O70457 Gene:YWHAG 14-3-3 protein gamma (Protein kinase C inhibitor protein-1) (KCIP-1). length=246;1e-97 /// Q99L51 // SIMILAR TO TYROSINE 3-MONOOXYGENASE/TRYPTOPHAN 5-MONOOXYGENASE ACTIVATION PROTEIN, THETA POLYPEPTIDE (FRAGMENT). length=197;5e-85 /// 143B_MOUSE // SW:O70455 Gene:YWHAB 14-3-3 protein beta/alpha (Protein kinase C inhibitor protein-1) (KCIP-1). length=245;1e-117" "J04532_at RN-U34 // protein kinase C, zeta Curated Ortholog /// rc_AI180424_at RG-U34A // 91.12% Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Putative Ortholog /// 1370197_a_at RAE230A // protein kinase C, zeta Curated Ortholog /// 1372249_at RAE230A // 91.12% Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Putative Ortholog /// rc_AA926328_g_at RG-U34B // 91.12% Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Putative Ortholog /// rc_AA926328_at RG-U34B // 91.12% Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Putative Ortholog /// rc_AI176209_at RG-U34C // 91.12% Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Putative Ortholog /// J04532_at RG-U34A // protein kinase C, zeta Curated Ortholog /// 1387774_at RAE230A // 91.12% Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Putative Ortholog /// Msa.14909.0_f_at Mu11KsubB // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// 1439005_x_at MOE430A // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// 1436981_a_at MOE430A // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// 1416102_at MOE430A // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// 1448218_s_at MOE430A // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// Msa.41232.0_f_at Mu11KsubB // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// d78647_s_at Mu11KsubA // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// 97544_at MG-U74Av2 // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog /// 1448219_a_at MOE430A // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Curated Ortholog" chr8q22.3 // 101999320-101999460 // - // 100 "Hs.75103 // 4 // NM_145690 // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide // chr8 // 101999140-102032498 // - /// Hs.75103 // 4 // NM_003406 // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide // chr8 // 101999140-102033796 // -" 200640_at HG-U133A Homo sapiens 1-Mar-03 Exemplar RefSeq NM_003406.1 "gb:NM_003406.1 /DEF=Homo sapiens tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide (YWHAZ), mRNA. /FEA=mRNA /GEN=YWHAZ /PROD=tyrosine 3-monooxygenasetryptophan5-monooxygenase activation protein, zeta polypeptide /DB_XREF=gi:4507952 /UG=Hs.75103 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide /FL=gb:BC003623.1 gb:M86400.1 gb:NM_003406.1 gb:U28964.1" g4507952 Hs.75103.0 --- "tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide" YWHAZ Chr:8q23.1 Hs.75103 7534 AAD14300 /// P29312 EC:3.1.1.4 --- --- --- "NM_003406 // tyrosine 3/tryptophan 5 -monooxygenase activation protein, zeta polypeptide /// NM_145690 // tyrosine 3/tryptophan 5 -monooxygenase activation protein, zeta polypeptide" --- --- 5515 // protein binding // experimental evidence /// 19904 // protein domain specific binding // extended:Unknown; 14-3-3; 2.3e-150 Regulatory subunit // not recorded --- --- --- --- --- MAP00561 // Glycerolipid metabolism /// MAP00580 // Phospholipid degradation /// MAP00590 // Prostaglandin and leukotriene metabolism IPR000308 // 14-3-3 protein 14-3-3 // 14-3-3 protein;2.3e-150 IPB000308 // 14-3-3 proteins;9.2e-153 d1qjb